Metagenome Family F090733

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090733
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	59 residues
Representative Sequence	PRLLPYTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Number of Associated Samples	97
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	15.69 %
% of genes near scaffold ends (potentially truncated)	73.15 %
% of genes from short scaffolds (< 2000 bps)	82.41 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.259 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.518 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.82% β-sheet: 16.87% Coil/Unstructured: 78.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00582	Usp	8.33
PF04542	Sigma70_r2	6.48
PF00106	adh_short	4.63
PF00753	Lactamase_B	3.70
PF03551	PadR	1.85
PF00583	Acetyltransf_1	1.85
PF00903	Glyoxalase	1.85
PF13377	Peripla_BP_3	1.85
PF13561	adh_short_C2	0.93
PF01145	Band_7	0.93
PF01243	Putative_PNPOx	0.93
PF01453	B_lectin	0.93
PF00665	rve	0.93
PF11339	DUF3141	0.93
PF00872	Transposase_mut	0.93
PF01149	Fapy_DNA_glyco	0.93
PF00005	ABC_tran	0.93
PF08279	HTH_11	0.93
PF01381	HTH_3	0.93
PF01695	IstB_IS21	0.93
PF00296	Bac_luciferase	0.93
PF13520	AA_permease_2	0.93
PF00202	Aminotran_3	0.93
PF01391	Collagen	0.93
PF02329	HDC	0.93
PF03466	LysR_substrate	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	6.48
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	6.48
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	6.48
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	6.48
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.85
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.85
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.93
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.93
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
All Organisms	root	All Organisms	40.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
cellular organisms	root	All Organisms → cellular organisms	40.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.26 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.63 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.78 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	5.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.63 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.78 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	5.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.63 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.85 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	5.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.63 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.85 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.93 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.93 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	0.93 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.26 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	5.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.63 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.85 %
Microlunatus elymi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	0.93 %
Agrobacterium rhizogenes	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	0.93 %
Streptosporangium canum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	0.93 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573002\|GZIGXIF01BI172	Not Available	510	Open in IMG/M
3300004092\|Ga0062389_100334905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1601	Open in IMG/M
3300005330\|Ga0070690_101699107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	513	Open in IMG/M
3300005332\|Ga0066388_101117616	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300005434\|Ga0070709_10042266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2814	Open in IMG/M
3300005435\|Ga0070714_100435684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1243	Open in IMG/M
3300005436\|Ga0070713_102457857	Not Available	503	Open in IMG/M
3300005439\|Ga0070711_101969915	Not Available	514	Open in IMG/M
3300005440\|Ga0070705_100283067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1180	Open in IMG/M
3300005618\|Ga0068864_101031309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	817	Open in IMG/M
3300005921\|Ga0070766_11224381	Not Available	520	Open in IMG/M
3300006028\|Ga0070717_10564159	Not Available	1031	Open in IMG/M
3300006174\|Ga0075014_100864745	Not Available	539	Open in IMG/M
3300006237\|Ga0097621_100648156	Not Available	969	Open in IMG/M
3300006804\|Ga0079221_11335533	Not Available	566	Open in IMG/M
3300006806\|Ga0079220_11480659	Not Available	581	Open in IMG/M
3300009545\|Ga0105237_11187403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	770	Open in IMG/M
3300009824\|Ga0116219_10749809	Not Available	533	Open in IMG/M
3300010046\|Ga0126384_10552532	Not Available	1001	Open in IMG/M
3300010358\|Ga0126370_10978406	Not Available	770	Open in IMG/M
3300010361\|Ga0126378_10061789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3546	Open in IMG/M
3300010366\|Ga0126379_10254610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1732	Open in IMG/M
3300010366\|Ga0126379_12627733	Not Available	601	Open in IMG/M
3300010376\|Ga0126381_100233951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	2479	Open in IMG/M
3300010396\|Ga0134126_12531871	Not Available	558	Open in IMG/M
3300010398\|Ga0126383_11321165	Not Available	811	Open in IMG/M
3300012971\|Ga0126369_11247137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	833	Open in IMG/M
3300012971\|Ga0126369_13195694	Not Available	536	Open in IMG/M
3300013105\|Ga0157369_10751442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1003	Open in IMG/M
3300013296\|Ga0157374_10534599	Not Available	1179	Open in IMG/M
3300016404\|Ga0182037_11975168	Not Available	523	Open in IMG/M
3300016445\|Ga0182038_11222579	Not Available	670	Open in IMG/M
3300017946\|Ga0187879_10246955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	995	Open in IMG/M
3300018060\|Ga0187765_11184879	Not Available	535	Open in IMG/M
3300020579\|Ga0210407_11153531	Not Available	585	Open in IMG/M
3300025898\|Ga0207692_10133589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1404	Open in IMG/M
3300025906\|Ga0207699_10162850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1486	Open in IMG/M
3300025906\|Ga0207699_11311699	Not Available	536	Open in IMG/M
3300025915\|Ga0207693_10515180	Not Available	933	Open in IMG/M
3300025928\|Ga0207700_10015330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5051	Open in IMG/M
3300025929\|Ga0207664_10567526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1019	Open in IMG/M
3300026023\|Ga0207677_10285324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1357	Open in IMG/M
3300027846\|Ga0209180_10782599	Not Available	512	Open in IMG/M
3300027855\|Ga0209693_10560679	Not Available	542	Open in IMG/M
3300028906\|Ga0308309_10439494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1123	Open in IMG/M
3300031543\|Ga0318516_10004732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6088	Open in IMG/M
3300031544\|Ga0318534_10344705	Not Available	858	Open in IMG/M
3300031572\|Ga0318515_10711916	Not Available	531	Open in IMG/M
3300031572\|Ga0318515_10778888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300031668\|Ga0318542_10541554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300031680\|Ga0318574_10551666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300031680\|Ga0318574_10778387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	561	Open in IMG/M
3300031681\|Ga0318572_10841772	Not Available	545	Open in IMG/M
3300031682\|Ga0318560_10008209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4385	Open in IMG/M
3300031713\|Ga0318496_10110440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1482	Open in IMG/M
3300031713\|Ga0318496_10193104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1118	Open in IMG/M
3300031720\|Ga0307469_10370676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1210	Open in IMG/M
3300031736\|Ga0318501_10686745	Not Available	564	Open in IMG/M
3300031744\|Ga0306918_11305603	Not Available	558	Open in IMG/M
3300031748\|Ga0318492_10004832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5136	Open in IMG/M
3300031751\|Ga0318494_10944368	Not Available	506	Open in IMG/M
3300031764\|Ga0318535_10412273	Not Available	602	Open in IMG/M
3300031770\|Ga0318521_10520313	Not Available	716	Open in IMG/M
3300031771\|Ga0318546_10376252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	990	Open in IMG/M
3300031771\|Ga0318546_11110208	Not Available	556	Open in IMG/M
3300031777\|Ga0318543_10103091	Not Available	1227	Open in IMG/M
3300031781\|Ga0318547_10870034	Not Available	562	Open in IMG/M
3300031782\|Ga0318552_10599159	Not Available	562	Open in IMG/M
3300031782\|Ga0318552_10725063	Not Available	507	Open in IMG/M
3300031792\|Ga0318529_10227309	Not Available	867	Open in IMG/M
3300031793\|Ga0318548_10384440	Not Available	688	Open in IMG/M
3300031795\|Ga0318557_10240344	Not Available	829	Open in IMG/M
3300031833\|Ga0310917_10502277	Not Available	825	Open in IMG/M
3300031835\|Ga0318517_10003390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4973	Open in IMG/M
3300031845\|Ga0318511_10246427	Not Available	801	Open in IMG/M
3300031859\|Ga0318527_10135078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1029	Open in IMG/M
3300031879\|Ga0306919_10947659	Not Available	659	Open in IMG/M
3300031890\|Ga0306925_11776078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300031890\|Ga0306925_12007759	Not Available	545	Open in IMG/M
3300031912\|Ga0306921_10603729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1269	Open in IMG/M
3300031941\|Ga0310912_10947924	Not Available	661	Open in IMG/M
3300031959\|Ga0318530_10250197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	730	Open in IMG/M
3300032010\|Ga0318569_10349132	Not Available	689	Open in IMG/M
3300032025\|Ga0318507_10357689	Not Available	636	Open in IMG/M
3300032041\|Ga0318549_10516785	Not Available	537	Open in IMG/M
3300032043\|Ga0318556_10196474	Not Available	1049	Open in IMG/M
3300032043\|Ga0318556_10714518	Not Available	521	Open in IMG/M
3300032054\|Ga0318570_10547322	Not Available	528	Open in IMG/M
3300032054\|Ga0318570_10562811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	520	Open in IMG/M
3300032055\|Ga0318575_10547014	Not Available	587	Open in IMG/M
3300032065\|Ga0318513_10269548	Not Available	826	Open in IMG/M
3300032066\|Ga0318514_10415040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300032067\|Ga0318524_10005207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	5164	Open in IMG/M
3300032076\|Ga0306924_12486223	Not Available	520	Open in IMG/M
3300032174\|Ga0307470_11120393	Not Available	634	Open in IMG/M
3300032770\|Ga0335085_10050286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5639	Open in IMG/M
3300032782\|Ga0335082_10182402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	2007	Open in IMG/M
3300032783\|Ga0335079_10020353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7608	Open in IMG/M
3300032955\|Ga0335076_10026069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5872	Open in IMG/M
3300033289\|Ga0310914_10297140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1456	Open in IMG/M
3300034818\|Ga0373950_0076736	Not Available	692	Open in IMG/M
3300034820\|Ga0373959_0187226	Not Available	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.59%
Host-Associated	Host-Associated	7.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.81%
Plants	Host-Associated → Plants	7.41%
Aquatic	Environmental → Aquatic	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Freshwater	Environmental → Aquatic → Freshwater	1.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Sediment	Environmental → Aquatic → Sediment	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.59%
Loam	Environmental → Terrestrial → Soil → Loam	15.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.85%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE1_04394460	2189573002	Grass Soil	MIVAPLPPRTVQLCIHCRQNPAGFWVSHTSGQTVWRPWCLSCCQGLDQSRCHVIPFDGHGGAGRYQ
Ga0062389_1003349053	3300004092	Bog Forest Soil	HTIQLCIHCRQNPAGFWVSHASDQTVRSPWCLSCCQDLDPACHHIRPFDLLYLR*
Ga0070690_1016991071	3300005330	Switchgrass Rhizosphere	TTPRLVPHTIQLCIQCRHNPAGFWVSYASGQTVRRPWCLSCCQNLDRAGYHVQPFPS*
Ga0066388_1011176161	3300005332	Tropical Forest Soil	LPHTIQLCIHCRQNPAGFWVSRNGSQTVRCPWCLSCCQDLHPCCYHVNPFDT*
Ga0070709_100422662	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MARRRTVIALRLRPHTIQLCVCCHQNPAGFWVSRTGDQTVRRPWCLSCCQELDPGRYHMISFDGHGYRAGRSR*
Ga0070714_1004356841	3300005435	Agricultural Soil	MSAPRRLPHTIQQCIHCRHNPAGFWVSRNSSQTVRRPWCLSCCQNLDPGRYHVQPFDS*
Ga0070713_1024578572	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LCIHCRRNPAGFWVSRNGSQTVRRPWCLSCCQDLDPDANRIKPFDD*
Ga0070711_1019699151	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPRLLPRTIQLCIHCRHNPAGFWVSRSSSQTVRRPWCLSCCQNLDPGRYRVRPFGG*
Ga0070705_1002830671	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	RRTMTAPRRLPRTIQLCIHCRNNPAGFWVSRSSGQTVRRPWCLSCCQNLDRAGYHVQPFPS*
Ga0068864_1010313091	3300005618	Switchgrass Rhizosphere	RRRTMTAPRRLPRTIQLCIHCRNNPAGFWVSRSSGQTVRRPWCLSCCQNLDRAGYHVQPFPS*
Ga0070766_112243811	3300005921	Soil	MPGLLPHTIQLCIHCRHNPAGFWVSHNGDQTVRRPWCLSCCQDLDSACHHVTPFNS*
Ga0070717_105641592	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RPLPHTIQLCIHCRRNPAGFWVSRNGSQTVRRPWCLSCCQDLDPDGNRIKPFDD*
Ga0075014_1008647452	3300006174	Watersheds	TPRPLPHTLQLCIHCQHNPAGCVSRASGQTVRRPWCLSCCQNLDPDSYHTTPFDS*
Ga0097621_1006481561	3300006237	Miscanthus Rhizosphere	RTRTTPRLVPHTIQLCIQCRHNPAGFWVSYASGQTVRRPWCLSCCQDLDPRCHHIKPFDS
Ga0079221_113355332	3300006804	Agricultural Soil	PRLLPHTIQLCIHCKENPAGFWVSRDSDQTVRRPWCLSCCQDLDPACHHIKPFDLQYLP*
Ga0079220_114806592	3300006806	Agricultural Soil	MPQRHTKAAPRLRPHTVQLCLCCRQNPAGFWVSRTSDQTVRRPYCLSCCQWLDHSRYDVIPFDNHSDTGRMR*
Ga0105237_111874032	3300009545	Corn Rhizosphere	TIQLCIHCRNNPAGFWVSRSSGQTVRRPWCLSCCQNLDRAGYHVQPFPS*
Ga0116219_107498091	3300009824	Peatlands Soil	HTIQLCIHCRHNPAGFWFSHNRDQMVRRPWCLSCCQDLDPESHHIRPFDLQYLR*
Ga0126384_105525321	3300010046	Tropical Forest Soil	IAPRLRPRTIQLCICCHQNPAGFWVSRTSDQTVRRPWCLSCCQWLEPGRYHVIPFDGHDGAGRFQ*
Ga0126373_110981852	3300010048	Tropical Forest Soil	MSRRRTATSLGWLPHTVQRCIHCHQNPAGFWVSYSSGQTVRRPWCLSCCRAVDLDRCDVIPFDG*
Ga0074044_108454501	3300010343	Bog Forest Soil	LPHTIQLCIHCRQNPAGFWVSHNSGKTVRRPWCLSCCQALDQDRYDVIPFDG*
Ga0126370_109784061	3300010358	Tropical Forest Soil	MTASRWLPRTIQLCIHCRHNPAGFWVSRDSGQTARRPWCLSCCQNLDPGRCHVQPFGS*
Ga0126378_100617891	3300010361	Tropical Forest Soil	MTRRRAITTPRLLPRTIQLCIHCRQNPAGFWVSRNGGQTVRRPWCLSCCQDLDPGCHHVQPFDS*
Ga0126379_102546104	3300010366	Tropical Forest Soil	APRTIQLCIHCPQNPAGFWGSRTSDQTVRRPCCLACCQWLDPGRYQVIPFDGHGDTGRLR
Ga0126379_126277332	3300010366	Tropical Forest Soil	TIQLCIHCRHNPAGFWVSRDSSQTVRRPWCLSCCQSLDPGCYHVRPFES*
Ga0126381_1002339511	3300010376	Tropical Forest Soil	MPRLLPRTIQLCIHCRHNPAGFWVSRIDSRIARRPWCLSCCQDLDPGCYHINPFDS*
Ga0134126_125318711	3300010396	Terrestrial Soil	IQLCVHCQHDPAGFWVSRDGDRTVCRPWCLSCCQDLDPACHHIKPFDLQYLR*
Ga0126383_113211651	3300010398	Tropical Forest Soil	MTIAPRLRPRTMQLCIHCRHRPAGFWASRTTGQTARRPWRLSCCQGLDQGRYHTIPFDGHTGAGR*
Ga0126369_112471371	3300012971	Tropical Forest Soil	MIAPRLRPRTVQLCIHCRHNPAGFWVSRTSNQTVRRPWCLSCGQGLDPGRYHVIPFDSH
Ga0126369_131956941	3300012971	Tropical Forest Soil	MSRLLPHTIQLCIHCRHNPAGFWVSRIGSRTSRRPWCLSCCQGLDPGCYHVNPFDS*
Ga0157369_107514421	3300013105	Corn Rhizosphere	QAGQLSSRRRTMSAPRRLPHTIQQCIHRRHNPAGFWVSRSSGQTVRRPWCLSCCQNLDRAGYHVQPFPS*
Ga0157374_105345991	3300013296	Miscanthus Rhizosphere	TRRRTITTARLLPHTIQVCIHCRQNPAGFWVSPTSGQTVRRPWCLSCCQDLDPGWYHIKPFDS*
Ga0182037_119751682	3300016404	Soil	VQLCIHCRHNPAGFWVSHMGDQTARRPWCLSCCGGLDQSRYHVIPFDGHDSARRFQ
Ga0182038_112225791	3300016445	Soil	TVQLCIHCRHNPAGFWVSHMGDQTARRPWCLSCCGGLDQSRYHVIPFDGHDSARRFQ
Ga0187879_102469552	3300017946	Peatland	WLLPHTIQLCIHCRHNPAGFWVSRQGDQTVRRPWCLSCCQDLDPACHHIRPFDLQYLR
Ga0187783_100943113	3300017970	Tropical Peatland	MAKLNTVASRRTMTAARLLPHTVQLCIHCRQNPAGFWVSQTGGQTVRRPWCLSCGQGLDRDRCDVIPFDS
Ga0187765_111848792	3300018060	Tropical Peatland	QRRMMIPPRTIQLCIHCRQRPAGSRASHTTGQTARRPWRLSCCQGLDQSRYHTIPSGGHTGAGR
Ga0210407_111535312	3300020579	Soil	RWRTVPVARLLPHTIQLCIHCRQNPAGFWVSRDSDQTVRRPWCLSCCQDLDPACHHIRPFDLQYLR
Ga0207692_101335891	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	RTVIALRLRPHTIQLCVCCHQNPAGFWVSRTGDQTVRRPWCLSCCQELDPGRYHMISFDGHGYRAGRSR
Ga0207699_101628501	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	SPASPQPAPSTTMARRRTVIALRLRPHTIQLCVCCHQNPAGFWVSRTGDQTVRRPWCLSCCQELDPGRYHMISFDGHGYRAGRSR
Ga0207699_113116991	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LLPHTIQVCIHCRQNPAGFWVSPTSGQTVRRPWCLSCCQDLDPGRYLAKPFDS
Ga0207693_105151802	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTARPRLPRTIQLCIHCRHNPAGFWVSRNSSQTVRRPWCLSCCQNLDPGRYHAQPFGS
Ga0207700_100153301	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LCIHCRRNPAGFWVSRNGSQTVRRPWCLSCCQDLDPDANRIKPFDD
Ga0207664_105675261	3300025929	Agricultural Soil	RRTMSAPRRLPHTIQQCIHCRHNPAGFWVSRNSSQTVRRPWCLSCCQNLDPGRYHVQPFD
Ga0207677_102853242	3300026023	Miscanthus Rhizosphere	MTAPRRLPRTIQLCIHCRNNPAGFWVSRSSGQTVRRPWCLSCCQNLDRAGYHVQPFPS
Ga0209180_107825991	3300027846	Vadose Zone Soil	GQPATMAKASRQRPMIAPRLLPRTVQLCIDCRQSPAGLWVSHKSSKTVRRPWCLSCCDGLDRNRSDMIAFDS
Ga0209693_105606792	3300027855	Soil	RRRTITMPRLLPHTIQLCIHCRRNPAGFWVSHNGDQTMRRPWCLSCCQDLNPACHHVIPFDS
Ga0308309_104394943	3300028906	Soil	RRRTIPAPRLLPHTIQLCTHCRHNPAGFWVSRNGGQAVRRPWCLSCCQDLDSACHHVTPFDN
Ga0318516_100047322	3300031543	Soil	MAMPRLLPYTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318534_103447052	3300031544	Soil	NSRRRTIPVPHLLHTIQLCIHCRHNPAGFWVSGTGGQTVRRPWCLSCCQDLDPACHHIRPFDLEYLR
Ga0318515_107119162	3300031572	Soil	IQLCIHCRHNPAGFWVSGTGGQTVRRPWCLSCCQDLDPACHHIRPFDLEYLR
Ga0318515_107788882	3300031572	Soil	NTRRRTMAAPRLLPYTIQLCIHCRQNPAGFWVSRTSDQTVRRPWCLSCCQDLDPACHRIRPFDLQYLR
Ga0318542_105415542	3300031668	Soil	TIMSRLLPHTIQLCVHCRHNPAGFWVSRNDSRTARRPWCLSCCQDLDPGCYHVNPFDS
Ga0318574_105516662	3300031680	Soil	NSRRHAITTPGLLPHTIQLCVHCRHNPAGFWISHDSDQTVRRPWCLCCCQDLDPACHHIKPFDP
Ga0318574_107783872	3300031680	Soil	PRLLPHTIQLCIHCRHNPAGFWVSHTTDQIVRRPWCLSCCQDLDPGCHHITPFEA
Ga0318572_108417721	3300031681	Soil	VPRRRMMIAPRLRPRTVQLCICCRQNPAGFWVSQASDQTVRRPWCLSCCHQLDQSRYHVIPFDGHGGTGRLR
Ga0318560_100082091	3300031682	Soil	VPFRLTHTIQLCIHCRHNPAGFWVSHSGGQTVRRPWCLSCCQDLDPRCYHVQPYDS
Ga0318496_101104403	3300031713	Soil	IQLCIHCRHNPAGFWVSHTTDQIVRRPWCLSCCQDLDPGCHHITPFEA
Ga0318496_101931043	3300031713	Soil	PRRRLMIAPLLRPRTVQLCIHCRHNPAGFWVSHMGDQTARRPWCLSCCGGLDQSRYHVIPFDGHDSARRFQ
Ga0307469_103706763	3300031720	Hardwood Forest Soil	ASPQPAPSTTMARRRTVIALRLRPHTIQLCVCCHQNPAGFWVSRTGDQTVRRPWCLSCCQELDPGRYHMISFDGHGYRAGRSR
Ga0318501_106867452	3300031736	Soil	IQQCIHCRHNPAGFWVSRDSRQTVRRPWCLSCCQHLDPASHHIAPFDP
Ga0306918_113056032	3300031744	Soil	RPRTVQLCIHCRHNPAGFWVSHMGDQTARRPWCLSCCGGLDQSRYHVIPFDGHDSARRFQ
Ga0318492_100048328	3300031748	Soil	TIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318494_109443682	3300031751	Soil	AVPRQRMMIAPRLRPRTVQLCICCRQNPAGFWVSHASDQTVRRPWCLSCCHQLDQSRYHVIPFDGHDGTGRLR
Ga0318535_104122732	3300031764	Soil	LRLLPHTIQLCIHCRHNPAGFWVSRTGDQTVRRPWCLFCCHDLDPDCYHIKPFDS
Ga0318554_100161081	3300031765	Soil	SPHTVQLCIHCHQNPAGFWVSRTAAQIVRRPWCLSCCQHLDPGRYHAIPFEHPGEAGQFQ
Ga0318521_105203132	3300031770	Soil	QRMMIAPRLRPRTVQLCICCRQNPAGFWVSHASDQTVRRPWCLSCCHQLDQSRYHVIPFDGHDGTGRLR
Ga0318546_103762522	3300031771	Soil	IQLCIHCQQNPAGFWVSRTSDQTVRRPWCLSCCQDLDPARHHIRPFDLQYLR
Ga0318546_111102082	3300031771	Soil	IQLCIHCRHTPAGFWVSRTGDQTVRRPWCLFCCHDLDPDCYHIKPFDS
Ga0318543_101030912	3300031777	Soil	IQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318547_108700341	3300031781	Soil	LPRTIQLCIHCRRNPAGFWVSRISGQTVRRPWCLSCCQNLDPGCCHVQPFGS
Ga0318552_105991592	3300031782	Soil	QRCMTIAPRTIQLCIHCRWRPAGFWASHTTGQTVRRPRCLSRCQGLDPGSYHVIPFDGHAGAGRWP
Ga0318552_107250631	3300031782	Soil	LHPIQLCIHCRHNPAGFWVSGTGGQTVRRPWCLSCCQDLDPACHHIRPFDLEYLR
Ga0318529_102273092	3300031792	Soil	PRLLPYTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318548_103844401	3300031793	Soil	AMPRLLPYTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318557_102403441	3300031795	Soil	RRPIPVLRLLPHTIQLCIHCRHNPAGFWVSRTGDQTVRRPWCLFCCHDLDPDCYHIKPFD
Ga0318497_105774982	3300031805	Soil	MSRRTKTARRLRPHTIQLCIHCQQNPAGFWVSRTGDQIVQRPWCLSCCQHLDPCRYHVIPFDHPGEAGQFQ
Ga0310917_105022772	3300031833	Soil	IQLCIHCRHNPAGFWVSHTTDQIVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318517_100033901	3300031835	Soil	MAMPRLLPYTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPVDS
Ga0318511_102464272	3300031845	Soil	HTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318527_101350782	3300031859	Soil	MPRPLPHTIQLCTNCRHNPAGFWVGRTSDQTVRRPWCRSCCQDLDLARHRIEPFDLEYLR
Ga0306919_109476592	3300031879	Soil	RRRMMIAPRLRPRTVQLCICCRQNPAGFWVSQASDQTVRRPWCLSCCHQLDQSRYHVIPFDGHGGTGRLR
Ga0306925_117760781	3300031890	Soil	ATAARRLKNPFTMIAPRLAPHTVQLCIHCRQNPAGFWVSRTSDQTVRRPWCLSCCQWLDPDRYHVIPFDSHGGTRRSR
Ga0306925_120077591	3300031890	Soil	HRPAPAAVPRRRMMIAPRLRPRTVQLCICCRQNPAGFWVSQASDQTVRRPWCLSCCHQLDQSRYHVIPFDGHGGTGRLR
Ga0306921_106037293	3300031912	Soil	RTMIAPRLRPRTVQLCIHCRQNPAGFWVSRTSNQAVRRPWCLSCCHQLDQSRYHVIPFDGHDGTGRLR
Ga0310912_109479241	3300031941	Soil	PYTIQLCIHCRHNPAGFWVSRSTGQTVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318530_102501971	3300031959	Soil	LHTIQLCIHCRQNPAGFWVSRDCDQTVRRPWCLSCCQDLDPARHHIRPFDLQYLR
Ga0318569_103491321	3300032010	Soil	AMPRLLPYTIQLCIHCRHNPAGFWVSRSTGETVRRPWCLSCCQDLDPRCYHVQPFDS
Ga0318507_103576892	3300032025	Soil	TIQQCIHCRHNPAGFWVSRDSRQTVRRPWCLSCCQHLDPASHHIAPFDP
Ga0318559_102894873	3300032039	Soil	PHTVQLCIHCHQNPAGFWVSRTAAQIVRRPWCLSCCQHLDPGRYHAIPFEHPGEAGQFQ
Ga0318549_105167851	3300032041	Soil	RLLPYTIQLCIHCRQNPAGFWVSRTSDQTVRRPWCLSCCQDLDPDSYHINPFDS
Ga0318556_101964742	3300032043	Soil	TIQLCIHCRHNPAGFWVSRTGDQTVRRPWCLFCCHDLDPDCYHIKPFDS
Ga0318556_107145181	3300032043	Soil	PRLPHTIQLCIHCRHNPAGFWVSRDSGQTVRRPWCLSCCQDLDLASHHIRPFDLNYLR
Ga0318570_105473222	3300032054	Soil	TMTTPFPQLHTIQLCIHCRQNPAGFWVSRDCDQTVRRPWCLSCCQDLDPASHHIRPFDLQYLR
Ga0318570_105628112	3300032054	Soil	MAAPRLLPHTIQLCIHCQQNPAGFWVSRTSDQTVRRPWCLSCCQDLDPARHHIRPFDLQYLR
Ga0318575_105470141	3300032055	Soil	MPALRPPQAVHTVQLCIHCRQDPAGFLASRTCGMPVQRPWCLSCCRGLDPGRCHRIPFDGHG
Ga0318513_102695482	3300032065	Soil	HQGRRTIPVPHLLHTIQLCIHCRHNPAGFWVSGTGGQTVRRPWCLSCCQDLDPACHHIRPFDLEYLR
Ga0318514_104150401	3300032066	Soil	VQLCIHCRQNPAGFWVSQTSDQTARRPWCLSCCQWLDPDRYHVIPFDSHGGTRRSR
Ga0318524_100052071	3300032067	Soil	IQLCTNCRHNPAGFWVGRTSDQTVRRPWCRSCCQDLDLARHRIEPFDLEYLR
Ga0306924_124862231	3300032076	Soil	RRTITMPRLLPHTIQLCIHCRQNPAGFWVSHTGDQTVRRPWCLSCCQDLDPGCYHVSRFD
Ga0307470_111203931	3300032174	Hardwood Forest Soil	RPHTIQLCVCCHQNPAGFWVSRTGDQTVRRPWCLSCCQELDPGRYHMISFDGHGYRAGRS
Ga0335085_100502862	3300032770	Soil	MTVPGVLPHTIQLCIHCRHNPAGFWVSRASNRTVRRPWCLSCCQDLDPACHHIKPFDP
Ga0335082_101824023	3300032782	Soil	MLRLLPHTIQLCIHCRHNPAGFWVSRNGSRTARRPWCLSCCQDLDPGCYHVNPFDR
Ga0335079_100203535	3300032783	Soil	MLRLPHTIQLCIHCRHNPAGFWVSRNDSRTSRRPWCLSCCQDLDPGCYHVNSFDS
Ga0335076_100260696	3300032955	Soil	MARRRTVIALRLRPHTIQLCVCCHQNPAGFWVSRTGDLTVRRPWCLSCCQELDPGRYHMISFDGHGYRAGRSR
Ga0310914_102971402	3300033289	Soil	TIPTPRLRLHTIQQCIHCRHNPAGFWVSRDSRQTVRRPWCLSCCQHLDPASHHIAPFDP
Ga0373950_0076736_145_315	3300034818	Rhizosphere Soil	VSGLLPRTIQLCIHCQRNPAGFWVSRDSGQTVRRPWCLSCCQNLDPGCCHVQPFDS
Ga0373959_0187226_143_301	3300034820	Rhizosphere Soil	VPHTIQLCIQCRHNPAGFWVSYASGQTVRRPWCLSCCQDLDPRCHHIKPFDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090733

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences