Metagenome / Metatranscriptome Family F090737

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090737
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	61 residues
Representative Sequence	MGTERQVMQDYLDALVKRADFPSYFTEDVVATFEGTDQRADGREAAGQLIRYVHEGAFDA
Number of Associated Samples	91
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.33 %
% of genes near scaffold ends (potentially truncated)	98.15 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.481 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.963 % of family members)
Environment Ontology (ENVO)	Unclassified (35.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.444 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.77% β-sheet: 6.82% Coil/Unstructured: 53.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF10739	DUF2550	5.56
PF01411	tRNA-synt_2c	3.70
PF03147	FDX-ACB	2.78
PF00701	DHDPS	2.78
PF07366	SnoaL	2.78
PF13191	AAA_16	1.85
PF01740	STAS	1.85
PF12681	Glyoxalase_2	1.85
PF02627	CMD	0.93
PF00496	SBP_bac_5	0.93
PF00903	Glyoxalase	0.93
PF03459	TOBE	0.93
PF13006	Nterm_IS4	0.93
PF00872	Transposase_mut	0.93
PF05988	DUF899	0.93
PF08924	DUF1906	0.93
PF02452	PemK_toxin	0.93
PF08241	Methyltransf_11	0.93
PF07883	Cupin_2	0.93
PF10935	DUF2637	0.93
PF07730	HisKA_3	0.93
PF07690	MFS_1	0.93
PF01266	DAO	0.93
PF02823	ATP-synt_DE_N	0.93
PF03466	LysR_substrate	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	5.56
COG0013	Alanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	3.70
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	2.78
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.93
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.93
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.93
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.93
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.48 %
Unclassified	root	N/A	43.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.48 %
Unclassified	root	N/A	43.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.48 %
Unclassified	root	N/A	43.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	49.07 %
Unclassified	root	N/A	43.52 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.15 %
Unclassified	root	N/A	43.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.11 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	10.19 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.85 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	10.19 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.78 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.85 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	10.19 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1.85 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.85 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.93 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.93 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	10.19 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.85 %
Ferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium	1.85 %
Actinotalea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Actinotalea	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	9.26 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.85 %
Ferrimicrobium acidiphilum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum	1.85 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	0.93 %
Actinotalea solisilvae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Actinotalea → Actinotalea solisilvae	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.52 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	9.26 %
Ferrimicrobium acidiphilum DSM 19497	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum → Ferrimicrobium acidiphilum DSM 19497	1.85 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.85 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	0.93 %
Actinotalea solisilvae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Actinotalea → Actinotalea solisilvae	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_110773284	Not Available	591	Open in IMG/M
3300004479\|Ga0062595_100476050	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300004479\|Ga0062595_102452245	Not Available	519	Open in IMG/M
3300005165\|Ga0066869_10054134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300005434\|Ga0070709_10838494	Not Available	724	Open in IMG/M
3300005436\|Ga0070713_101638644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	624	Open in IMG/M
3300006174\|Ga0075014_100786670	Not Available	561	Open in IMG/M
3300006175\|Ga0070712_101085315	Not Available	694	Open in IMG/M
3300006354\|Ga0075021_10123825	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300006804\|Ga0079221_10087950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1496	Open in IMG/M
3300006804\|Ga0079221_10823424	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300006854\|Ga0075425_100262962	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300006881\|Ga0068865_102032004	Not Available	522	Open in IMG/M
3300006903\|Ga0075426_10478556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	924	Open in IMG/M
3300006914\|Ga0075436_101330379	Not Available	544	Open in IMG/M
3300010048\|Ga0126373_12699529	Not Available	554	Open in IMG/M
3300010048\|Ga0126373_13211746	Not Available	509	Open in IMG/M
3300010358\|Ga0126370_10386175	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300010360\|Ga0126372_10797572	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300010361\|Ga0126378_10442358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Actinotalea → Actinotalea solisilvae	1414	Open in IMG/M
3300010362\|Ga0126377_13489232	Not Available	508	Open in IMG/M
3300010366\|Ga0126379_10806387	Not Available	1038	Open in IMG/M
3300010371\|Ga0134125_11404452	Not Available	761	Open in IMG/M
3300010396\|Ga0134126_11973260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	638	Open in IMG/M
3300010398\|Ga0126383_10156947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2131	Open in IMG/M
3300010398\|Ga0126383_12532355	Not Available	597	Open in IMG/M
3300011120\|Ga0150983_14097926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	660	Open in IMG/M
3300011120\|Ga0150983_16160205	Not Available	682	Open in IMG/M
3300012200\|Ga0137382_10196234	Not Available	1385	Open in IMG/M
3300016319\|Ga0182033_11386655	Not Available	633	Open in IMG/M
3300016341\|Ga0182035_10355487	Not Available	1219	Open in IMG/M
3300017933\|Ga0187801_10092149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1143	Open in IMG/M
3300017959\|Ga0187779_10791597	Not Available	646	Open in IMG/M
3300017959\|Ga0187779_11082858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	559	Open in IMG/M
3300017959\|Ga0187779_11358198	Not Available	505	Open in IMG/M
3300017970\|Ga0187783_10523226	Not Available	859	Open in IMG/M
3300017974\|Ga0187777_11116937	Not Available	574	Open in IMG/M
3300017975\|Ga0187782_10654245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	809	Open in IMG/M
3300017993\|Ga0187823_10306812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	553	Open in IMG/M
3300018085\|Ga0187772_10017664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4040	Open in IMG/M
3300018085\|Ga0187772_10190032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1375	Open in IMG/M
3300020580\|Ga0210403_10791633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300020581\|Ga0210399_11389192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300021088\|Ga0210404_10920542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	500	Open in IMG/M
3300021358\|Ga0213873_10282968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	532	Open in IMG/M
3300021401\|Ga0210393_10011442	All Organisms → cellular organisms → Bacteria	6917	Open in IMG/M
3300021407\|Ga0210383_10206805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1680	Open in IMG/M
3300021407\|Ga0210383_10594211	Not Available	954	Open in IMG/M
3300021407\|Ga0210383_11399042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	582	Open in IMG/M
3300021474\|Ga0210390_10257940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1477	Open in IMG/M
3300021560\|Ga0126371_11451011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	816	Open in IMG/M
3300022717\|Ga0242661_1132107	Not Available	547	Open in IMG/M
3300024227\|Ga0228598_1120756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	532	Open in IMG/M
3300025898\|Ga0207692_10194389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1189	Open in IMG/M
3300025906\|Ga0207699_10058803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2301	Open in IMG/M
3300025906\|Ga0207699_10972580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	627	Open in IMG/M
3300025928\|Ga0207700_11023046	Not Available	739	Open in IMG/M
3300025928\|Ga0207700_11057465	Not Available	726	Open in IMG/M
3300025929\|Ga0207664_11694998	Not Available	554	Open in IMG/M
3300025949\|Ga0207667_12064672	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300026998\|Ga0208369_1034708	Not Available	503	Open in IMG/M
3300027725\|Ga0209178_1359590	Not Available	546	Open in IMG/M
3300027783\|Ga0209448_10270932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	558	Open in IMG/M
3300028906\|Ga0308309_11611551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	552	Open in IMG/M
3300031018\|Ga0265773_1000150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2126	Open in IMG/M
3300031544\|Ga0318534_10007667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5254	Open in IMG/M
3300031544\|Ga0318534_10818510	Not Available	523	Open in IMG/M
3300031545\|Ga0318541_10117274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1443	Open in IMG/M
3300031549\|Ga0318571_10287166	Not Available	615	Open in IMG/M
3300031564\|Ga0318573_10592505	Not Available	597	Open in IMG/M
3300031640\|Ga0318555_10162622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1198	Open in IMG/M
3300031640\|Ga0318555_10809091	Not Available	506	Open in IMG/M
3300031680\|Ga0318574_10719599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	585	Open in IMG/M
3300031682\|Ga0318560_10624409	Not Available	583	Open in IMG/M
3300031715\|Ga0307476_10942784	Not Available	636	Open in IMG/M
3300031723\|Ga0318493_10173853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1126	Open in IMG/M
3300031747\|Ga0318502_10854104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300031753\|Ga0307477_10470673	Not Available	856	Open in IMG/M
3300031770\|Ga0318521_10132742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1401	Open in IMG/M
3300031780\|Ga0318508_1070235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	948	Open in IMG/M
3300031781\|Ga0318547_10561568	Not Available	707	Open in IMG/M
3300031782\|Ga0318552_10442784	Not Available	663	Open in IMG/M
3300031797\|Ga0318550_10525764	Not Available	570	Open in IMG/M
3300031821\|Ga0318567_10707658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	571	Open in IMG/M
3300031860\|Ga0318495_10068778	Not Available	1577	Open in IMG/M
3300031890\|Ga0306925_10377938	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1520	Open in IMG/M
3300031890\|Ga0306925_11122216	Not Available	793	Open in IMG/M
3300031896\|Ga0318551_10072498	Not Available	1788	Open in IMG/M
3300031897\|Ga0318520_11008977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	526	Open in IMG/M
3300031946\|Ga0310910_10714197	Not Available	792	Open in IMG/M
3300032001\|Ga0306922_12196257	Not Available	532	Open in IMG/M
3300032008\|Ga0318562_10371976	Not Available	831	Open in IMG/M
3300032025\|Ga0318507_10021116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2315	Open in IMG/M
3300032043\|Ga0318556_10293206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	850	Open in IMG/M
3300032044\|Ga0318558_10368648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum → Ferrimicrobium acidiphilum DSM 19497	713	Open in IMG/M
3300032054\|Ga0318570_10046841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1781	Open in IMG/M
3300032055\|Ga0318575_10100147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1404	Open in IMG/M
3300032060\|Ga0318505_10590675	Not Available	522	Open in IMG/M
3300032064\|Ga0318510_10393137	Not Available	589	Open in IMG/M
3300032180\|Ga0307471_101929989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	739	Open in IMG/M
3300032261\|Ga0306920_100852472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1335	Open in IMG/M
3300032770\|Ga0335085_11678138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300032828\|Ga0335080_12185606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	532	Open in IMG/M
3300032895\|Ga0335074_10022621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8859	Open in IMG/M
3300032896\|Ga0335075_10748311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	928	Open in IMG/M
3300033290\|Ga0318519_10089706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1634	Open in IMG/M
3300033290\|Ga0318519_10511000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum → Ferrimicrobium acidiphilum DSM 19497	724	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.52%
Host-Associated	Host-Associated	6.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.89%
Plants	Host-Associated → Plants	6.48%
Aquatic	Environmental → Aquatic	4.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Sediment	Environmental → Aquatic → Sediment	1.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.81%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031018	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1107732842	3300001431	Soil	MGTERQVMQGYLDALVQRADFPAYFADDVIASFEGTDQAAVGRDRAGRLIRYVHENAFDARTEVKNLLVDEGKA
Ga0062595_1004760501	3300004479	Soil	MGTERQVMQGYLDALVRRADSPAYFAVDVVASFEGTDQAAVGRDRAGQLIRYVHENAFDA
Ga0062595_1024522451	3300004479	Soil	MGTERQVMQGYLDALVQRADFPAYFADDVVASFEGTDQTAVGRDRAGQLIRYVHENAFDA
Ga0066869_100541341	3300005165	Soil	MGAERKVMQEYIDALVKRADYPAYFTDDVVATFEGTDQRAVGREAAGQLIRYVHEGAFDA
Ga0070709_108384941	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGTERQVMQGYLDALVQRADFPAYFTDDVIASFEGTDQTAVGRDRAGRLIRFVHESAFDA
Ga0070713_1016386442	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKGKPMGTERQVMQEYLDTLVKRGDYPAFFTDDVIATFEGTDYRGEGRQAAGDLIRYVHEIAFDAR
Ga0075014_1007866702	3300006174	Watersheds	MGTERQVMHDYLDALVKRADFPGYFTEDVVATFEGTDQRAEGREAAGQLIRYVHENAFDA
Ga0070712_1010853152	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHDYLDALVKRGDFPRYFTDDVVATFEGTDQRADGRDAAGQLIRYVHEGAFDARMDLKNLLADDGKAAIEAE
Ga0075021_101238253	3300006354	Watersheds	MGAERKVMQEYIDALVKRADYPAYFTDYVVATIEGIDQRAVGREAAGQLI
Ga0079221_100879501	3300006804	Agricultural Soil	MGAERKVMQEYIDALVKRADYPVYFTDDVVATFEGTDQRAVGREAAGQLIRYVHEGAFDARPE
Ga0079221_108234242	3300006804	Agricultural Soil	MSAERQVMQDYIDALVKRADFTRYFTEDVIATFEGTDQRADGREAAGQLIRYVHETAFD
Ga0075425_1002629625	3300006854	Populus Rhizosphere	MGIERQVMQGYLEALAGRGDFPACFTDDVIASFEGTDQTAVGRDRAGRLIRYVHEGA
Ga0068865_1020320041	3300006881	Miscanthus Rhizosphere	MGAERKVMQEYIDALVKRADYPVYFTDDVVATFEGTDQRAVGREAAGQLIRYVHEGAFDARP
Ga0075426_104785562	3300006903	Populus Rhizosphere	MSAERQVMQDYIDALVKRADFTRYFTEDVIATFEGTDQRADGREAAGQLIR
Ga0075436_1013303792	3300006914	Populus Rhizosphere	MGIERQVMQGYLEALAGRGDFPACFTDDVIASFEGTDQTAVGRDRAGRLIRYVHE
Ga0126373_126995292	3300010048	Tropical Forest Soil	MGAERKVMQEYLDALAKRADYPAYFTDAVVATFEGTDQRAVGQEAAGQLIR
Ga0126373_132117462	3300010048	Tropical Forest Soil	MGSERQVLQDYLDTLIERGDFPAYFTDDVIASFEGTDQTAVGRDRAGRLIRHVHQDAFDARAEVK
Ga0126370_103861751	3300010358	Tropical Forest Soil	MGTERQVMQGYLDALAQRGDYPAYFADDIIASFEGTDQTAVGRDRAGRLIRHVHENAFDARAELKNLLVDEGKAAIEA
Ga0126372_107975721	3300010360	Tropical Forest Soil	MGTERQVMQGYIDALVQRADFAAYFADDVIASFEGTDQTAVGRDRAGQLIRYVHESAFDAWAELKNL
Ga0126378_104423581	3300010361	Tropical Forest Soil	MGAERKVMQVYLDALAKRADYPAYFTDDVVATFEGTGQRAVGREAAGQL
Ga0126377_134892321	3300010362	Tropical Forest Soil	MGTERQVMQGYLDALAQRGDYPAYFTDDVIASFEGTDQTAVGRDRAGRLIRHVHEN
Ga0126379_108063873	3300010366	Tropical Forest Soil	MGTERQVMQGYLDALAQRGDYPAYFTDDVIASFEGTDQTAVGRDRAGRLIRHV
Ga0134125_114044521	3300010371	Terrestrial Soil	MGIERQVMQGYLEALAGRGDFPACFTDDVIASFEGTDQTAVGRDRAGRL
Ga0134126_119732601	3300010396	Terrestrial Soil	MGTERQVMQEYLDTLVKRGDYPAFFTDDVIATFEGTDYRGEGRQAAGELIRYVHEIAFDARPDVKSLFADDG
Ga0126383_101569471	3300010398	Tropical Forest Soil	MGAERQVMQGYLDALAQRGDYPAYFTDDVIASFEGTDQTAVGRDRAGRLIRH
Ga0126383_125323551	3300010398	Tropical Forest Soil	MQDYLDALVKRADFAAYFTDDVVATFEGTDQRADGREAAEQLIRYVHEGAF
Ga0150983_140979263	3300011120	Forest Soil	ERRGAMGTERQVMQDYLDALVKREDFPAYFTDDVAATFEGTDQRADGRDAASQLIR*
Ga0150983_161602052	3300011120	Forest Soil	MDTERQAMQDYLDALVKRGDFPAYFTADVVATFEGTDQRAEGREAAAQLIRY
Ga0137382_101962342	3300012200	Vadose Zone Soil	MGVERQVMQGYLDALGQRGDFPAYFTDDVIASFEGTDQTAVGRDRAGRLIRFVHESAFDARAELK
Ga0182033_113866551	3300016319	Soil	MGTERQLMQDYLDTLVKRGDYPAYFTEDVVATVEWADQRAEGREAVGQ
Ga0182035_103554873	3300016341	Soil	MSTERQVMQDYLDALVKREDFPAYFTEDVVATFEGTDQRADGRDAAGQLIRYVHERALNAQMELKNPLTDAGRPRSRR
Ga0187801_100921492	3300017933	Freshwater Sediment	MSTERQTMQDYLDALVKRDDFPAYFTDDVVASFEGTDQRAEGREAAGQLIRYVHEGAFDARMELKNLLTQ
Ga0187779_107915971	3300017959	Tropical Peatland	MSAERQVMQDYIDALVKRADFASYFTEDVVATFEGTDQRADGREAAGQLIRYVH
Ga0187779_110828581	3300017959	Tropical Peatland	MAGRGSHMGTERQVMQGYLDALVKRADFPAYFTDDVIASFEGTDQTAVGRDRAGQLIRYVHENAFDARAELKNLLVDTGKAAIEA
Ga0187779_113581981	3300017959	Tropical Peatland	VSHTGTERQVMQGYLDALIKRADFQSYFADDIVASFEGTDQAAVGRDRAAQLIRYVHENAFDARAELKNL
Ga0187783_105232261	3300017970	Tropical Peatland	MGTERQVMQDYLDTLIKRGDYPALFTEDVAATFEGTDQRADGREAAGGLIRYVHEIAFDARPE
Ga0187777_111169372	3300017974	Tropical Peatland	METERQVMQDYLDALVRRADYPRYFAEDVVATFEGTDYRAEGREAAGQLIWYVHQGAFDAKPEVKSLLVDGGKAA
Ga0187782_106542451	3300017975	Tropical Peatland	VMQDYLDALVKRADFPSYFTEDVVATFEGDRPAGRRPGGRRAADPVRA
Ga0187823_103068122	3300017993	Freshwater Sediment	MGTERQVMQEYLDTLVKRSDYPAFFTDDVIATFEGTDYRGEGRQAAGELI
Ga0187772_100176645	3300018085	Tropical Peatland	MGTERQVMQDYLDALVKRADFPSYFTEDVVATFEGDRPAGRRPGGRRAADPVRA
Ga0187772_101900321	3300018085	Tropical Peatland	MGTERQVMQDYLDALVKREDFTAYFTTDVVATFEGTDQRADGREAAGQLIR
Ga0210403_107916332	3300020580	Soil	MQEYLDTLVKRGDYPAFFTEDVIATFEGTDYRAEGRQAAGELIRYVHEIAFDARPDAKNLFVD
Ga0210399_113891921	3300020581	Soil	MGTERQVMQEYLDTLVKRGDYPAFFTEDVIATFEGTDYRAEGRQAAGELIRYVHEIAFDARPDVKNLFVDDG
Ga0210404_109205421	3300021088	Soil	MGTERQVMQDYLDALVKRADYPAYFTDDVVATFEGTDQRADGREAAGQLIRYVHQGAFDSRME
Ga0213873_102829681	3300021358	Rhizosphere	MGTERQVMQDYLDALVKRADFPRYFTDDVVATFEGTDQRADGRDAAGQLIRYVHEGAFDARMELRNLLADEGKAAIEA
Ga0210393_100114421	3300021401	Soil	MGTERQVMQEYLDALVKRADFPSYFTEDVVATFEGTDQRADGREAAGQLIRYVHEGAF
Ga0210383_102068052	3300021407	Soil	MSTQRQVMQDYLDALVKRADYSIYFTDDVVATFEGTDQRADGREAAGELIRYVHQGAFD
Ga0210383_105942111	3300021407	Soil	MGTERQVMQDYLDALVKRADFPAYFTDDVVATFEGTDQRADGRQAAAQLIRYVHEGAFDARME
Ga0210383_113990421	3300021407	Soil	MSTQRQAMQDYLDSLVKRTDFTAYYTDDVIASFEGTDQRAAGREAAGQLIRYVHEGAFDA
Ga0210390_102579404	3300021474	Soil	MDTERQVMQEYLDALVKRADFPSYFTEDVVATFEGTDQRADGRKAAGQL
Ga0126371_114510111	3300021560	Tropical Forest Soil	MSIERQVMQDYIDALVKRADFAAYFADDVVATFEGTDQRADGRAAAEQLIRYVHEGAFDA
Ga0242661_11321071	3300022717	Soil	MGTERQVMQDYLDALVKRADFPAYFTDDVVATFEGTDQRADGRQAAAELIRYVHEG
Ga0228598_11207561	3300024227	Rhizosphere	MGTERQVMQEYLDALVKRADFPSYFTDDVVATFEGTDQRAEGREAAGQLIRYVHEGAFDARM
Ga0207692_101943891	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MGTERQVMQEYLDTLVKRGDYPAFFTDDVIATFEGTDYRGEGRQAAGDLIRYVHEI
Ga0207699_100588033	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MGAERKVMQEYIDALVKRADYPVYFSDDVVATFEGTDQRAVGREAAGQLIRYVHEGAFDARP
Ga0207699_109725802	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MQEYLDTLVKRGDYPAFFTDDVIATFEGTDYRGEGRQAAGELIRYVHEI
Ga0207700_110230462	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MGAERKVMQEYLDALVKRADYPVYFSDDVVATFEGTDQRAVGREAAGQLIRYVHEGA
Ga0207700_110574651	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSTERQVMQDYLDALVNGADFPAYFTDDVVAAFEGTDQRADGREAAGQLI
Ga0207664_116949982	3300025929	Agricultural Soil	MGAERKVMQEYLDALVKRADYPVYFSDDVVATFEGTDQRAVGREAAGQLIRY
Ga0207667_120646722	3300025949	Corn Rhizosphere	EALAGRGDFPACFTDDVIASFEGTDQTAVGRDRAGRLIRYVHENAFDARAELKNLLKDRAKK
Ga0208369_10347081	3300026998	Forest Soil	MGTERQVMQEYLDALVKRADFPSYFTEDVVATFEGTDQRADGREAAGQLIRYVHEGAFDARME
Ga0209178_13595902	3300027725	Agricultural Soil	MSAERQVMQDYIDALVKRADFTRYFTEDVIATFEGTDQRADGREAAGQLIRYVHETAF
Ga0209448_102709321	3300027783	Bog Forest Soil	MGTERQVMQEYLDALVKRADFPRYFTGDVVATFEGTDQRADGREAAGQLIRYVHEGAFDARMELRNLLADD
Ga0308309_116115511	3300028906	Soil	MGTERQVMQEYLDALVKRADFPRYFTDDVVATFEGTGQRADGRDAAGQLIRYVHEGAFDARMELKNLLA
Ga0265773_10001503	3300031018	Soil	MGTERQVMQDYLDTLVKRADFPGYFTEDVVATFEGTDQRADGREAAGQLIRYVHEGAFDARMEL
Ga0318534_100076676	3300031544	Soil	MGSERQVMQDYLDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIARAYTG
Ga0318534_108185102	3300031544	Soil	MAWKEGHAMGTERQVMQDYLDALVKRADFPRYFSDDVVATFEGTDQRADGRDAAGQLIRYVHEGAFDARMELKNLLTEDG
Ga0318541_101172741	3300031545	Soil	MQDYIDALVKRADFAAYFTDDVVATFEGTDQRAAGRAAAEQLIRYVHEGAFDAR
Ga0318571_102871662	3300031549	Soil	MGTERQVMQDYLDALVKRADYPRYFTEDVVATFEGTDQRAEGREAAGQLIWYVHQGAFDAKPEVKCLLVDGG
Ga0318573_105925052	3300031564	Soil	MGAERKVMEEYLDALVKRADYPACFTDDVVATIEGTDQRAVGREAAGQLIRYIHE
Ga0318555_101626223	3300031640	Soil	MGTERQVMQDYLDALVKRADFPRYFSDDVVATFEGTDQRADGRDAAGQLIRYVHEGAFDARMELKNLLTEDGKAAIEAD
Ga0318555_108090911	3300031640	Soil	MGTERQLMQDYLHTLVKRGDYPAYFTEDVVATVEWADQRAEGREAVGQLIRYIH
Ga0318574_107195991	3300031680	Soil	MSTERQVMQDYLDALVKRADFPGHFTDDVVATFEGTDQRAVGREAAGELIRYVHEGAFDARMELKNLLAD
Ga0318560_106244092	3300031682	Soil	MGSERQVMQDYIDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIAFDA
Ga0307476_109427841	3300031715	Hardwood Forest Soil	MGTERQVMQEYLDALVKRADFPSYFTEDVVATFEGTDQRADGREAAGQ
Ga0318493_101738532	3300031723	Soil	MGTERQVMQEYLDALVKRADFPGYFTADVVATFEGTDQRAEGREAAGQLIRYVHE
Ga0318502_108541041	3300031747	Soil	MGSERQVMQDYLDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIAFDAHAEL
Ga0307477_104706732	3300031753	Hardwood Forest Soil	MGTERQVMQDYLDALVKRADFPSYFTEDVVATFEGTDQRADGREAAGQLIRYVHE
Ga0318521_101327421	3300031770	Soil	MGSERQVMQDYLDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMH
Ga0318508_10702352	3300031780	Soil	MGTERQVMQEYLDALVKRADFPGYFTADVVATFEGTDQRAEGREAAGQLIRYVHEGAFDARMELKNL
Ga0318547_105615682	3300031781	Soil	MGKERQVMQDYLDALVRRADYPRYFAEDVVATFEGTDQRAEGREAAGQLIWYVHQ
Ga0318552_104427842	3300031782	Soil	MSTERQVMQDYLDALVKREDFPAYFTDDVVATFEGTDQRADGRDAAGQLIRYVHE
Ga0318550_105257642	3300031797	Soil	MGSERQVMQDYIDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIA
Ga0318567_107076581	3300031821	Soil	MSTERQVMQDYLDALVKRADFPGHFTDDVVATFEGTDQRAVGREAAGELIRYVHEGAFDARMELK
Ga0318567_107160112	3300031821	Soil	MGTEQQVMQDYLDALVKRADFSRYFASGIVATIEGTDQRADGPEAAEQMI
Ga0318495_100687781	3300031860	Soil	MSTERQVMQDYLDALVKRADFPAYFTDDVVATFEGTDQRADGQEAAGQLIRHIHQYAFDARMELKNLLVDEGKAAIEADFV
Ga0306925_103779383	3300031890	Soil	MGTERQVMQDYLDALVKRADYPRYFTEDVVATFEGTDQRAEGREAAGQLIWYVHQGAFDAKAE
Ga0306925_111222161	3300031890	Soil	MSTERQVMQDYLDALVKRADYPAYFTDDAVATFEGTDQRASGRDAAGQLIRYVHQEAFDA
Ga0318551_100724981	3300031896	Soil	MSTERQVMQDYLDALVKRADFPAYFTDDVVATFEGTDQRASGRDAAGQLIRYVHQGA
Ga0318520_110089772	3300031897	Soil	MSTQRQAMQDYLDSLVKRADFTAYYTDDVVASFEGTDQRAAGRDAAGQLIRYVHEGAFDARMELKSL
Ga0310910_107141971	3300031946	Soil	MSTERQVMQDYLDALVKREDFPAYFTDDVVATFEGTDQRADGRDAAGQLIRYVHEGAFDARMELKNLL
Ga0306922_121962571	3300032001	Soil	MGTERQVMQDYLDTLVKRGDFPAYFTDDVVATFEGTDQRADGRDAAAQLI
Ga0318562_103719761	3300032008	Soil	MGTERQLMQDYLDTLVKRGDYPAYFTEDVVATVEWADQRAEGREAVGQLIRYIH
Ga0318507_100211161	3300032025	Soil	MGTERQVMQEYLDALVKRADFPGCFTADVVATFEGTDQRAEGREAAGQLIRYVHEGAFDARMELK
Ga0318556_102932061	3300032043	Soil	MGTERQVMQDYLDALVKRADFPRYFSDDVVATFEGTDQRADGRDAAGQLIRYVHEGAFDARMELKNLLTEDGKAAIE
Ga0318558_103686482	3300032044	Soil	MGSERQVMQDYIDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIAFDAHAELKNLLVDDGKAAIEA
Ga0318570_100468411	3300032054	Soil	MQDYIDALVKRADFAAYFTDDVVATFEGTDQRADGRAAAEQLIRYVHEGAFDARPELKN
Ga0318575_101001473	3300032055	Soil	MGTERQVMQEYLDALVKRADFPGYFTADVVATFEGTDQRAEGREAAGQLIRYVHEGAFDA
Ga0318505_105906752	3300032060	Soil	MGTERQVMQDYLDALVKRADYPRYFTEDVVATFEGTDQRAEGREAAGQLIWYVHQGAF
Ga0318510_103931372	3300032064	Soil	MGSERQVMQDYIDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIAFDAHAE
Ga0307471_1019299892	3300032180	Hardwood Forest Soil	MGTERQVMQGYLDALVQRGDFPAYFTDDVIASFEGTDQTAVGRDRAGRLIRFVHEGAFDARAE
Ga0306920_1008524721	3300032261	Soil	MSTERQVMQDYIDALVKRADFAAYFTDDVVATFEGTDQRADGREAAEQLIRYV
Ga0335085_116781382	3300032770	Soil	MGTERQVMQEYLDTLVKRGDYPAFFTDDVIATFEGTDYRGEGRQAAGELIRYVHEIAFDAGRM
Ga0335080_121856061	3300032828	Soil	MSAERQVMQDYIDALVKRADFSRYFTEDVVATFEGTDQRADGREAAEQMIRYVHEIAFDARAELKNLLVDTGKAAIE
Ga0335074_1002262110	3300032895	Soil	MGTERQVMQDYLDALVKRADFPSYFTEDVVATFEGTDQRADGREAAGQLIRYVHEGAFDA
Ga0335075_107483112	3300032896	Soil	MGTERQVMQDYLDALVKRADFSRYFTGDVVATFEGTDQRANGRDAAAQLMRY
Ga0318519_100897062	3300033290	Soil	MGSERQVMQDYLDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIAFDAHAELKNLLVDDGK
Ga0318519_105110001	3300033290	Soil	MGSERQVMQDYIDTLIKRGDFRVYFADDIVASVEGTDQTAVGRDRAGQLIRYMHEIAFDAHAEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090737

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences