Metagenome / Metatranscriptome Family F090798

Basic Information
Family ID	F090798
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	43 residues
Representative Sequence	MSEQPQPQRMQQTMPEDGGGWHHINAGPHLHIMFHPNRQLLGRE
Number of Associated Samples	82
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.15 %
% of genes from short scaffolds (< 2000 bps)	87.96 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Most Common Taxonomy
Group	Bacteria (79.630 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (49.074 % of family members)
Environment Ontology (ENVO)	Unclassified (60.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.926 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 11.11% Coil/Unstructured: 88.89%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF05532	CsbD	8.33
PF07969	Amidohydro_3	5.56
PF06481	COX_ARM	2.78
PF02515	CoA_transf_3	2.78
PF00441	Acyl-CoA_dh_1	1.85
PF00561	Abhydrolase_1	1.85
PF01609	DDE_Tnp_1	1.85
PF02771	Acyl-CoA_dh_N	0.93
PF12172	DUF35_N	0.93
PF01548	DEDD_Tnp_IS110	0.93
PF04255	DUF433	0.93
PF07690	MFS_1	0.93
PF00296	Bac_luciferase	0.93
PF09912	DUF2141	0.93
PF02826	2-Hacid_dh_C	0.93
PF04055	Radical_SAM	0.93
PF07908	Obsolete Pfam Family	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	8.33
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	2.78
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	2.78
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.78
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.85
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.85
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.63 %
Unclassified	root	N/A	20.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.63 %
Unclassified	root	N/A	20.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.63 %
Unclassified	root	N/A	20.37 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.04 %
Unclassified	root	N/A	20.37 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.33 %
Unclassified	root	N/A	20.37 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.85 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	44.44 %
Unclassified	root	N/A	20.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.44 %
Unclassified	root	N/A	20.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.44 %
Unclassified	root	N/A	20.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	1.85 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.93 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.93 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.44 %
Unclassified	root	N/A	20.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
unclassified Ramlibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter	1.85 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.93 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.44 %
Unclassified	root	N/A	20.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Ramlibacter sp. USB13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. USB13	1.85 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	0.93 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10119236	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	669	Open in IMG/M
3300004080\|Ga0062385_10621671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300004080\|Ga0062385_10645996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300004091\|Ga0062387_101201182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300004635\|Ga0062388_101351832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300005468\|Ga0070707_101006932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300005471\|Ga0070698_100196863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1952	Open in IMG/M
3300005471\|Ga0070698_100269349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1635	Open in IMG/M
3300005471\|Ga0070698_100603853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1038	Open in IMG/M
3300005540\|Ga0066697_10242266	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300006046\|Ga0066652_100542633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1087	Open in IMG/M
3300006173\|Ga0070716_100347483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1048	Open in IMG/M
3300010366\|Ga0126379_13352421	Not Available	536	Open in IMG/M
3300012685\|Ga0137397_10389486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1038	Open in IMG/M
3300016270\|Ga0182036_10317188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1191	Open in IMG/M
3300016270\|Ga0182036_10363132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1119	Open in IMG/M
3300016294\|Ga0182041_10156850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1764	Open in IMG/M
3300016319\|Ga0182033_10291420	Not Available	1343	Open in IMG/M
3300016319\|Ga0182033_10956740	Not Available	760	Open in IMG/M
3300016341\|Ga0182035_11293641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300016341\|Ga0182035_11643138	Not Available	580	Open in IMG/M
3300016357\|Ga0182032_11401051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300016357\|Ga0182032_11845585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300016357\|Ga0182032_11922443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300016371\|Ga0182034_10362823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1179	Open in IMG/M
3300016387\|Ga0182040_11789583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300016404\|Ga0182037_10130313	Not Available	1865	Open in IMG/M
3300016404\|Ga0182037_10161448	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300016404\|Ga0182037_10523134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	997	Open in IMG/M
3300017823\|Ga0187818_10589135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300017943\|Ga0187819_10076764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1992	Open in IMG/M
3300020579\|Ga0210407_10473709	Not Available	979	Open in IMG/M
3300020580\|Ga0210403_10187400	Not Available	1696	Open in IMG/M
3300020583\|Ga0210401_10100259	All Organisms → cellular organisms → Bacteria	2721	Open in IMG/M
3300021170\|Ga0210400_10043042	Not Available	3506	Open in IMG/M
3300021178\|Ga0210408_11068219	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300021401\|Ga0210393_10090097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. USB13	2436	Open in IMG/M
3300021405\|Ga0210387_11516734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300021405\|Ga0210387_11709017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300021406\|Ga0210386_10118796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. USB13	2185	Open in IMG/M
3300021406\|Ga0210386_11297191	Not Available	613	Open in IMG/M
3300021406\|Ga0210386_11748882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300021432\|Ga0210384_11209922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300021444\|Ga0213878_10389748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300021476\|Ga0187846_10040159	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M
3300021476\|Ga0187846_10264762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300021559\|Ga0210409_10512597	Not Available	1064	Open in IMG/M
3300021560\|Ga0126371_11179324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300022533\|Ga0242662_10051980	Not Available	1061	Open in IMG/M
3300022724\|Ga0242665_10318687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300024347\|Ga0179591_1109507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2338	Open in IMG/M
3300025915\|Ga0207693_10127381	Not Available	2001	Open in IMG/M
3300026551\|Ga0209648_10642510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300027698\|Ga0209446_1105467	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300027783\|Ga0209448_10301252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300031057\|Ga0170834_108799454	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300031546\|Ga0318538_10544427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300031546\|Ga0318538_10740111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300031549\|Ga0318571_10370308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300031561\|Ga0318528_10026897	All Organisms → cellular organisms → Bacteria	2801	Open in IMG/M
3300031561\|Ga0318528_10508683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300031572\|Ga0318515_10667036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300031640\|Ga0318555_10176296	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300031679\|Ga0318561_10315119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300031679\|Ga0318561_10793792	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031681\|Ga0318572_10895713	Not Available	527	Open in IMG/M
3300031708\|Ga0310686_104382663	Not Available	811	Open in IMG/M
3300031719\|Ga0306917_10308227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1224	Open in IMG/M
3300031724\|Ga0318500_10008946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3411	Open in IMG/M
3300031724\|Ga0318500_10512392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300031736\|Ga0318501_10137098	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300031753\|Ga0307477_10742328	Not Available	654	Open in IMG/M
3300031763\|Ga0318537_10185354	Not Available	775	Open in IMG/M
3300031770\|Ga0318521_10096578	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300031778\|Ga0318498_10054784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1774	Open in IMG/M
3300031792\|Ga0318529_10601013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300031793\|Ga0318548_10005597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4586	Open in IMG/M
3300031793\|Ga0318548_10447380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300031795\|Ga0318557_10328051	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031805\|Ga0318497_10865923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300031819\|Ga0318568_10409959	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300031821\|Ga0318567_10419203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300031821\|Ga0318567_10423185	Not Available	755	Open in IMG/M
3300031832\|Ga0318499_10237685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300031845\|Ga0318511_10251664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300031845\|Ga0318511_10287433	Not Available	742	Open in IMG/M
3300031879\|Ga0306919_10038722	Not Available	3075	Open in IMG/M
3300031879\|Ga0306919_10146549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1718	Open in IMG/M
3300031879\|Ga0306919_11358122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300031880\|Ga0318544_10128847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	964	Open in IMG/M
3300031890\|Ga0306925_10105602	All Organisms → cellular organisms → Bacteria	3000	Open in IMG/M
3300031893\|Ga0318536_10274397	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300031910\|Ga0306923_12469128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300031912\|Ga0306921_12432030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031941\|Ga0310912_10015835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4884	Open in IMG/M
3300031942\|Ga0310916_11007701	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300031954\|Ga0306926_10700784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1228	Open in IMG/M
3300032042\|Ga0318545_10039985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1564	Open in IMG/M
3300032052\|Ga0318506_10161375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	983	Open in IMG/M
3300032059\|Ga0318533_11215191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300032059\|Ga0318533_11257247	Not Available	541	Open in IMG/M
3300032060\|Ga0318505_10165025	Not Available	1030	Open in IMG/M
3300032063\|Ga0318504_10282975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300032068\|Ga0318553_10238395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	950	Open in IMG/M
3300032076\|Ga0306924_10547169	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300032076\|Ga0306924_10934041	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300032076\|Ga0306924_11337989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300032261\|Ga0306920_101906444	Not Available	835	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.67%
Aquatic	Environmental → Aquatic	8.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.81%
Freshwater	Environmental → Aquatic → Freshwater	8.33%
Cave	Environmental → Terrestrial → Cave	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.33%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	75.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	49.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090798

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_101192362	3300003368	Bog Forest Soil	MMSEQPQPQRMQQTMPEDGGGWHQVSAGPHLHIMFHSNRQLLGRESDGIVRP
Ga0062385_106216711	3300004080	Bog Forest Soil	MPEQPQPQRLPQTMPEDGGGWHRVDAGPHLHVMFHPNRQLLGREPDGV
Ga0062385_106459962	3300004080	Bog Forest Soil	MSEQPQPQPQRMQQTMPEDAGGWHHVNAGPHLHIMFHPNRQLLGRE
Ga0062387_1012011822	3300004091	Bog Forest Soil	MMSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLG
Ga0062388_1013518323	3300004635	Bog Forest Soil	MSEQPQPQPQRMQQTMPEDAGGWHHVNAGPHLHIMFHPNR
Ga0070707_1010069323	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLG
Ga0070698_1001968633	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKSEQPQPQLMQQTMPEDGDGWHQINGGPHLHIMFHPNRQLLG
Ga0070698_1002693492	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGR*
Ga0070698_1006038534	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGREADGIV
Ga0066697_102422663	3300005540	Soil	MSEQPQPQRMQQTMPEDGGGWHQINAGPHLHVMFHPNRQLL
Ga0066652_1005426332	3300006046	Soil	MPEQPQPQPVQQSMPEEENGWHRIDAGPHLLIMFNPNRQLLGRQPDEIERPSI
Ga0070716_1003474832	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MMSEQPQPQRMQQTMPEDGGGWHHINAGPHLHIMFHPNRQLLGRE
Ga0126379_133524212	3300010366	Tropical Forest Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPYLHIMFHPNRQLLGR
Ga0137397_103894862	3300012685	Vadose Zone Soil	MKSEQPQPQRVQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGREADGVKR
Ga0182036_103171883	3300016270	Soil	MSEQPQPERVPATMPEDGGGWHQINAGPHLHVMFHPNR
Ga0182036_103631321	3300016270	Soil	MSEQPQPQRMQQTMPEDGDGWHQVKAGPHLHIMFHPNRQLLGREPDGV
Ga0182041_101568503	3300016294	Soil	MSEQPQPQRMPATMPEDGGGWHQINAGPHLHVMFHPNRMGREADGIE
Ga0182033_102914201	3300016319	Soil	MSEQPQPQRMQQTMPEDGGGWHNVNAGPHLHIMFHPNRQLLGREP
Ga0182033_109567402	3300016319	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGR
Ga0182035_112936412	3300016341	Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLGREP
Ga0182035_116431382	3300016341	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGREPDDIVRP
Ga0182032_114010512	3300016357	Soil	MKSGQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFNPNRQLLGREADGV
Ga0182032_118455852	3300016357	Soil	MSEQPQPPRMQQTMPEEGDGWHRIDAGPHLHIMFNP
Ga0182032_119224431	3300016357	Soil	VPEQPQPHPMQQTMPEDGGGWHHIDAGPHLHIMFHANRT
Ga0182034_103628233	3300016371	Soil	MSEQPQPQRMQQTMPEDGGGWHHINAGPHLHIMFHPNR
Ga0182040_117895831	3300016387	Soil	MTEQPQRMPQTMPEDGGGWHRIDAGPHLHVMFHPNRRLLGREADGI
Ga0182037_101303132	3300016404	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGRE
Ga0182037_101614483	3300016404	Soil	MSEQPQPQRMQQTMPEDGGGWHHINAGPHLHIMFHPNRQLLGRE
Ga0182037_105231341	3300016404	Soil	MSEQPQPQPQRMQQTMPEDGGGWHRINAGPHLHMM
Ga0187818_105891351	3300017823	Freshwater Sediment	MSEQPQPMQAVMPEDGGGWHQVSAGPHLHIMFHPNRR
Ga0187819_100767643	3300017943	Freshwater Sediment	MMSEQPQPQRMQQTMPEDGGGWHQVNAGPHLHIMFHPNRQLLGREPDGVV
Ga0210407_104737091	3300020579	Soil	MMTQQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGREA
Ga0210403_101874005	3300020580	Soil	MMSEQPQPQRMQQTMPEDGAGWHNVNAGPHLHIMFHPN
Ga0210401_101002591	3300020583	Soil	MSEQPQPQRMQQTMPEEGGGWHRVNAGPHLHIMFNPNRSL
Ga0210400_100430424	3300021170	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINGGPHLHIMFHPNRQLLGREADGV
Ga0210408_110682191	3300021178	Soil	MTQQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGR
Ga0210393_100900974	3300021401	Soil	MAYGPQPQRLPQTMPEDGGGWHHVDAGPHLHVMFHPNRQLLGREPD
Ga0210387_115167341	3300021405	Soil	MSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPN
Ga0210387_117090171	3300021405	Soil	MPEQPQPEPQRVQAIMPEDSGGWHRINAGPHLHVMFHPNRQLLGREAD
Ga0210386_101187961	3300021406	Soil	MAYGPQPQRLPQTMPEDGGGWHHVDAGPHLHVMFHPNRQLLGREPDGVIRK
Ga0210386_112971912	3300021406	Soil	MSEQPQLQRMQQTMPEDGGGWRHVNAGPHLHIMFHPNRQLLGRE
Ga0210386_117488821	3300021406	Soil	MSEQPQPQRVPQTMPEDGGGWHRVDAGPHLHVMFHPNRR
Ga0210384_112099222	3300021432	Soil	MMSEQPQPQPQRMQQTMPEDGGGWHPVNAGPHLHIMFHPNRQLLGREP
Ga0213878_103897481	3300021444	Bulk Soil	MSEQPQPVQTMPEDGGGWHHVNAGPHLQVMFQPNRQLLGREPDGVERPS
Ga0187846_100401594	3300021476	Biofilm	MMSEQPQPQRMQQTMPEEGGGWHQVNAGPYLHIMFH
Ga0187846_102647622	3300021476	Biofilm	MSEEPQPQRMQQTMPEDGGGWHRINAGPHLHMMFHPNRQLLGREP
Ga0210409_105125972	3300021559	Soil	MSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQL
Ga0126371_111793242	3300021560	Tropical Forest Soil	MTEQPQPEPQRTPALMPEDGGGWHRINAGPHLHVMFHPNRQLLGREA
Ga0242662_100519802	3300022533	Soil	MAEQSQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQSLGREPDDIK
Ga0242665_103186872	3300022724	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGREAD
Ga0179591_11095073	3300024347	Vadose Zone Soil	MKSEQPQPQRMQQTMPEDGDGWHQINGGPHLHIMFHPTGNCSAGRRMAS
Ga0207693_101273812	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGREADGIA
Ga0209648_106425101	3300026551	Grasslands Soil	MSEQPQPQRMQQTMPENGGGWHHVNAGPYLHVMFHPNRQL
Ga0209446_11054672	3300027698	Bog Forest Soil	MSEQPQPQPQRMQQTMPEDAGGWHHVNAGPHLHIMFHPNRKLLGRES
Ga0209448_103012521	3300027783	Bog Forest Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHP
Ga0170834_1087994542	3300031057	Forest Soil	MPEQPQPQRLPQTMPEDGGGWHRVDAGPHLHVMFHPNRQLLGREPDGVLHR
Ga0318538_105444272	3300031546	Soil	MSEQPQPQRMQQTMPEDGDGWHQVKAGPHLHIMFHPNRQLLGREPDGVLR
Ga0318538_107401111	3300031546	Soil	MKSGQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFNPNRQL
Ga0318571_103703081	3300031549	Soil	MSEQREPQPQRMQQTMPEDGGGWHQINAGPHLHVMFHPNRQLLGRETDGIE
Ga0318528_100268976	3300031561	Soil	MMSEQPQPQRMQQTMPEDGGGWHNVNAGPHLHIMFHPNRQLLGR
Ga0318528_105086832	3300031561	Soil	MPEQPQPEPQRTQALMPEDGGGWHQINAGPHLHIMFHPNRQLLGRETD
Ga0318515_106670361	3300031572	Soil	MSEQPQPHRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLGREPDDIVR
Ga0318555_101762963	3300031640	Soil	MSEQPQPEPQRTQAIMPEDGGGWHRIDAGPHLHVMFH
Ga0318561_103151192	3300031679	Soil	MSEQPQPERVPATMPEDGGGWHQINAGPHLHVMFHP
Ga0318561_107937922	3300031679	Soil	MSEQPQPQRMPATMPEDGGGWHEINAGPHLHVMFHPNRMGREADGIE
Ga0318572_108957132	3300031681	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPNRQLLGRESDGIVRRS
Ga0310686_1043826632	3300031708	Soil	MSEQPQPQPRPMRATMPEDGGGWRQVNAGPHLHIMF
Ga0306917_103082273	3300031719	Soil	MPEQPQPEPQRTQALMPEDGGGWHRSNAGPHLHIMFHP
Ga0318500_100089462	3300031724	Soil	MSKQPQPQRMQQTMPEDGGGWHRINAGPHLHMMFHPNRQLLGREADGVLRK
Ga0318500_105123922	3300031724	Soil	MSEQPQPQRMQQTMPEDGGGWHHINAGPHLHIMFHPNRRLLGREDD
Ga0318501_101370983	3300031736	Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFH
Ga0307477_107423282	3300031753	Hardwood Forest Soil	MSEQPQPQRMQQTMPEDGAGWHQVSAGPHLHIMFH
Ga0318537_101853543	3300031763	Soil	MSEQPQPQRMQQTMPEDGGGWHNVNAGPHLHIMFH
Ga0318521_100965781	3300031770	Soil	MMSEQPQPQRMQQTMPEDGGGWHNVNAGPHLHIMFHPNRQLLGRE
Ga0318498_100547843	3300031778	Soil	MKSGQPQPQRMLQTMPEDGDGWHQINAGPHLHIMFNPNRQLLGREADGVK
Ga0318529_106010131	3300031792	Soil	MSEQPQPQPQRMQQTMPEDGGGWHRINAGPHLHMMFH
Ga0318548_100055971	3300031793	Soil	MSKQPQPQRMQQTMPEDGGGWHRINAGPHLHMMFHPNRQLLGREADG
Ga0318548_104473801	3300031793	Soil	MTEQPQRTQQTMPEDGGGWHRIDAGPHLHVMFHPNRQLLGRETDGIE
Ga0318557_103280511	3300031795	Soil	MSEQPQPQRMQQTMPEDGDGWHHVNAGPYLHVMFHPNRRLLGREPDDIER
Ga0318497_108659232	3300031805	Soil	MPEQPQPEPQRTQALMPEDGGGWHQINAGPHLHIMFHPNRQL
Ga0318568_104099591	3300031819	Soil	MSEQPQPQRMQQTMPEDGDGWHHVNAGPYLHVMFH
Ga0318567_104192033	3300031821	Soil	VPEQPQPHPMQQTMPEDGGGWHHIDAGPHLHIMFHANRTLL
Ga0318567_104231852	3300031821	Soil	MPEQPQPEPQRTQALMPEDGGGWHRINAGPHLHIM
Ga0318499_102376852	3300031832	Soil	MSEQPQPQRMQQTMPEDGDGWHQVKAGPHLHIMFHPNRQLLGREPDGVLRKS
Ga0318511_102516642	3300031845	Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLG
Ga0318511_102874331	3300031845	Soil	MKSEQPQPQRMQQTMPEDGDGWHQINAGPHLHIMFHPN
Ga0306919_100387225	3300031879	Soil	MMSEQPQPQRMQQTMPEDGGGWHNVNAGPHLHIMFHPNRQLL
Ga0306919_101465493	3300031879	Soil	MSEQPQPQRMPATMPEDGGGWHQINAGPHLHVMFHPNR
Ga0306919_113581221	3300031879	Soil	MMSEQHEPQPQRMQQTMPEDGGGWHQINAGPHLHVMFHPNRRLLG
Ga0318544_101288471	3300031880	Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRNCSAES
Ga0306925_101056025	3300031890	Soil	MMSEQPQPQRMQQTMPEDGGGWHNVNAGPHLHIMFHPN
Ga0318536_102743971	3300031893	Soil	MSEQPQPQRMQQTMPEDGDGWHHVNAGPYLHVMFHPNRRLLGRE
Ga0306923_124691281	3300031910	Soil	MSEQPQPPRMQQTMPEEGGGWHRIDAGPHLHIMFNPNRLGRQPDEIE
Ga0306921_124320302	3300031912	Soil	MSEQPQPQRMQQTMPEEGGGWHRVNAGPHLHIMFNPNRQLLG
Ga0310912_100158351	3300031941	Soil	MSEQPQPQRIQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLG
Ga0310916_110077012	3300031942	Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLGREPDDIV
Ga0306926_107007843	3300031954	Soil	MTPEQPQAQRMEQTMPEGGGGWHHVKAGPHLNIMFHPNRQLLGRE
Ga0318545_100399854	3300032042	Soil	MSEQPQPQRMQQTMPEDGDGWHQVKAGPHLHIMFHPNRQLLG
Ga0318506_101613751	3300032052	Soil	MSEQPQPQRMQQTMPEDGGGWHHINAGPHLHIMFHPNRRLLGREDDIV
Ga0318533_112151912	3300032059	Soil	MMSEQPQPQRMQQTMPEDGAGWHHVSAGPHLHIMFH
Ga0318533_112572472	3300032059	Soil	MSEQPQPEPQRTQALMPEDGGGWHRINAGPHLHVMF
Ga0318505_101650252	3300032060	Soil	MSEQPQPQRMQQTMPEDGAGWHQVSAGPHLHIMFHPNRQL
Ga0318504_102829751	3300032063	Soil	MTEQPQRTQQTMPEDGGGWHRIDAGPHLHVMFHPNRQLLGRETDGIER
Ga0318553_102383951	3300032068	Soil	MSEQPQPQRMQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLGREPDDIVRP
Ga0306924_105471691	3300032076	Soil	MSEQPQPQRIQQTMPEDGGGWHHVNAGPHLHIMFHPNRQLLGRE
Ga0306924_109340412	3300032076	Soil	MSEQPEPQPQRGPQTMPEDGGGWHRINAGPHLHIMFHP
Ga0306924_113379892	3300032076	Soil	MKSGQPQPQRMQQTMPEDGDGWHQINAGPHLHIMF
Ga0306920_1019064442	3300032261	Soil	MSEQPQPQRMQQTMPEDGAGWHQVSAGPHLHIMFHPN

Hidden Markov Model


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