Metagenome / Metatranscriptome Family F090815

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090815
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	68 residues
Representative Sequence	MFKKHYAWHVRIQQEGGHFRVYYQHHFPRGTVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDKGV
Number of Associated Samples	74
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.44 %
% of genes near scaffold ends (potentially truncated)	27.78 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.963 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (38.889 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.111 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.96% β-sheet: 27.08% Coil/Unstructured: 48.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF09361	Phasin_2	8.33
PF12826	HHH_2	3.70
PF00533	BRCT	2.78
PF07883	Cupin_2	2.78
PF13396	PLDc_N	2.78
PF00239	Resolvase	1.85
PF02796	HTH_7	1.85
PF00248	Aldo_ket_red	0.93
PF09851	SHOCT	0.93
PF13561	adh_short_C2	0.93
PF02463	SMC_N	0.93
PF14499	DUF4437	0.93
PF03349	Toluene_X	0.93
PF13924	Lipocalin_5	0.93
PF01425	Amidase	0.93
PF00892	EamA	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.85
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.85
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG2067	Long-chain fatty acid transport protein	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
All Organisms	root	All Organisms	37.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
cellular organisms	root	All Organisms → cellular organisms	37.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.56 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.37 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.04 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.93 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.93 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.93 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig10408	Not Available	1576	Open in IMG/M
2170459010\|GIO7OMY02FUAQP	Not Available	512	Open in IMG/M
2209111022\|2221219783	Not Available	676	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1003345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3012	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1001151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	2565	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1005536	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1311	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1025324	Not Available	628	Open in IMG/M
3300004479\|Ga0062595_100075691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1677	Open in IMG/M
3300004633\|Ga0066395_10709572	Not Available	598	Open in IMG/M
3300005332\|Ga0066388_100011793	All Organisms → cellular organisms → Bacteria → Proteobacteria	6934	Open in IMG/M
3300005332\|Ga0066388_100782458	Not Available	1549	Open in IMG/M
3300005332\|Ga0066388_103335661	Not Available	820	Open in IMG/M
3300005332\|Ga0066388_107623767	Not Available	543	Open in IMG/M
3300005363\|Ga0008090_15231772	Not Available	888	Open in IMG/M
3300005764\|Ga0066903_100218401	Not Available	2885	Open in IMG/M
3300005764\|Ga0066903_100414400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2226	Open in IMG/M
3300005764\|Ga0066903_101906038	Not Available	1139	Open in IMG/M
3300005764\|Ga0066903_102056340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1098	Open in IMG/M
3300005764\|Ga0066903_105026282	Not Available	701	Open in IMG/M
3300005764\|Ga0066903_106176522	Not Available	626	Open in IMG/M
3300005764\|Ga0066903_107619653	Not Available	558	Open in IMG/M
3300006172\|Ga0075018_10825672	Not Available	510	Open in IMG/M
3300009176\|Ga0105242_11923528	Not Available	632	Open in IMG/M
3300009792\|Ga0126374_10005490	All Organisms → cellular organisms → Bacteria	4469	Open in IMG/M
3300009792\|Ga0126374_10610220	Not Available	807	Open in IMG/M
3300010043\|Ga0126380_11008005	Not Available	702	Open in IMG/M
3300010043\|Ga0126380_11440502	Not Available	607	Open in IMG/M
3300010046\|Ga0126384_12391042	Not Available	511	Open in IMG/M
3300010047\|Ga0126382_10012805	All Organisms → cellular organisms → Bacteria → Proteobacteria	4099	Open in IMG/M
3300010358\|Ga0126370_10041175	All Organisms → cellular organisms → Bacteria → Proteobacteria	2870	Open in IMG/M
3300010359\|Ga0126376_11265783	Not Available	756	Open in IMG/M
3300010360\|Ga0126372_11452645	Not Available	720	Open in IMG/M
3300010361\|Ga0126378_10091102	Not Available	2982	Open in IMG/M
3300010361\|Ga0126378_12882412	Not Available	549	Open in IMG/M
3300010362\|Ga0126377_10227001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1805	Open in IMG/M
3300010362\|Ga0126377_10661094	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095	Open in IMG/M
3300010366\|Ga0126379_10633326	Not Available	1158	Open in IMG/M
3300010366\|Ga0126379_10846362	Not Available	1015	Open in IMG/M
3300010366\|Ga0126379_10892122	Not Available	991	Open in IMG/M
3300010398\|Ga0126383_10355736	All Organisms → cellular organisms → Bacteria → Proteobacteria	1486	Open in IMG/M
3300012208\|Ga0137376_10164242	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300012948\|Ga0126375_10775278	Not Available	756	Open in IMG/M
3300012971\|Ga0126369_10285325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1644	Open in IMG/M
3300012971\|Ga0126369_10804288	Not Available	1022	Open in IMG/M
3300015371\|Ga0132258_10317519	All Organisms → cellular organisms → Bacteria	3838	Open in IMG/M
3300015371\|Ga0132258_12217215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1379	Open in IMG/M
3300015372\|Ga0132256_100649437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1170	Open in IMG/M
3300016294\|Ga0182041_10000081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37866	Open in IMG/M
3300016357\|Ga0182032_10000245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	20981	Open in IMG/M
3300016387\|Ga0182040_10134008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1741	Open in IMG/M
3300016404\|Ga0182037_10046940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2861	Open in IMG/M
3300016422\|Ga0182039_10011421	All Organisms → cellular organisms → Bacteria → Proteobacteria	5170	Open in IMG/M
3300016445\|Ga0182038_10032354	Not Available	3310	Open in IMG/M
3300016445\|Ga0182038_10071999	All Organisms → cellular organisms → Bacteria → Proteobacteria	2405	Open in IMG/M
3300018027\|Ga0184605_10530510	Not Available	509	Open in IMG/M
3300018028\|Ga0184608_10462713	Not Available	545	Open in IMG/M
3300018054\|Ga0184621_10273935	Not Available	598	Open in IMG/M
3300018072\|Ga0184635_10031206	All Organisms → cellular organisms → Bacteria → Proteobacteria	2001	Open in IMG/M
3300019869\|Ga0193705_1071059	Not Available	687	Open in IMG/M
3300019875\|Ga0193701_1099276	Not Available	543	Open in IMG/M
3300021560\|Ga0126371_10175232	Not Available	2224	Open in IMG/M
3300021560\|Ga0126371_10265365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1835	Open in IMG/M
3300021560\|Ga0126371_10680479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1177	Open in IMG/M
3300021560\|Ga0126371_13047035	Not Available	567	Open in IMG/M
3300027915\|Ga0209069_10274822	Not Available	885	Open in IMG/M
3300028711\|Ga0307293_10157246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	723	Open in IMG/M
3300028768\|Ga0307280_10164346	Not Available	772	Open in IMG/M
3300028787\|Ga0307323_10061990	Not Available	1325	Open in IMG/M
3300028791\|Ga0307290_10171818	Not Available	794	Open in IMG/M
3300028791\|Ga0307290_10402403	Not Available	501	Open in IMG/M
3300028819\|Ga0307296_10016614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3849	Open in IMG/M
3300030945\|Ga0075373_11202528	Not Available	585	Open in IMG/M
3300031226\|Ga0307497_10303014	Not Available	733	Open in IMG/M
3300031544\|Ga0318534_10176702	Not Available	1234	Open in IMG/M
3300031545\|Ga0318541_10025643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2873	Open in IMG/M
3300031545\|Ga0318541_10047019	Not Available	2202	Open in IMG/M
3300031561\|Ga0318528_10413361	Not Available	724	Open in IMG/M
3300031572\|Ga0318515_10151313	Not Available	1237	Open in IMG/M
3300031573\|Ga0310915_10009390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5617	Open in IMG/M
3300031573\|Ga0310915_10035094	All Organisms → cellular organisms → Bacteria	3159	Open in IMG/M
3300031573\|Ga0310915_10045279	Not Available	2819	Open in IMG/M
3300031679\|Ga0318561_10141405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1288	Open in IMG/M
3300031679\|Ga0318561_10322517	Not Available	846	Open in IMG/M
3300031679\|Ga0318561_10607489	Not Available	602	Open in IMG/M
3300031680\|Ga0318574_10477829	Not Available	730	Open in IMG/M
3300031681\|Ga0318572_10686962	Not Available	609	Open in IMG/M
3300031719\|Ga0306917_10059215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2609	Open in IMG/M
3300031719\|Ga0306917_10216853	Not Available	1455	Open in IMG/M
3300031719\|Ga0306917_10312689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1215	Open in IMG/M
3300031724\|Ga0318500_10299168	Not Available	788	Open in IMG/M
3300031763\|Ga0318537_10172794	Not Available	805	Open in IMG/M
3300031770\|Ga0318521_10161993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1276	Open in IMG/M
3300031771\|Ga0318546_10734459	Not Available	695	Open in IMG/M
3300031835\|Ga0318517_10494045	Not Available	551	Open in IMG/M
3300031879\|Ga0306919_10039191	Not Available	3058	Open in IMG/M
3300031879\|Ga0306919_10854220	Not Available	698	Open in IMG/M
3300031879\|Ga0306919_11248779	Not Available	563	Open in IMG/M
3300031890\|Ga0306925_10016374	All Organisms → cellular organisms → Bacteria	7302	Open in IMG/M
3300031893\|Ga0318536_10335604	Not Available	766	Open in IMG/M
3300031959\|Ga0318530_10212432	Not Available	795	Open in IMG/M
3300031981\|Ga0318531_10184933	Not Available	938	Open in IMG/M
3300032001\|Ga0306922_10296018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1738	Open in IMG/M
3300032001\|Ga0306922_11627357	Not Available	641	Open in IMG/M
3300032044\|Ga0318558_10069417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1600	Open in IMG/M
3300032089\|Ga0318525_10413476	Not Available	691	Open in IMG/M
3300032091\|Ga0318577_10263795	Not Available	825	Open in IMG/M
3300033289\|Ga0310914_11203621	Not Available	659	Open in IMG/M
3300033290\|Ga0318519_10061699	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	3.70%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.81%
Aquatic	Environmental → Aquatic	5.56%
Plants	Host-Associated → Plants	3.70%
Modeled	Engineered → Modeled	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.81%
Sediment	Environmental → Aquatic → Sediment	5.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.70%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0408.00001040	2166559005	Simulated	MHVRIQQEGKHFRVYYKHHCPKGPVENRDPRRFNSLEEAEQFAKYVRRANRIYTELALRREH
F62_00907620	2170459010	Grass Soil	MLNQKHHSCNVRTQQEDGHFRVYYQHRYPNGPAENRDTRRFNSLEEAEQFAKYVRRANRIYAELCGENTEGVA
2222067037	2209111022	Grass Soil	NQKHYTWHVRTQLEGGHFRVYYRHHYPNGKVEENRDPRRFNSLEEAEQFAKTVRRTNRIFRGLDAENTKGVD
AF_2010_repII_A100DRAFT_10033452	3300000655	Forest Soil	MAIRGFKRHYAWHVRIQQEGGHFRVYYQHHFPRGIVEEERDPRRFNSFEEAEQFAKEVRRANRIFTELDKGV*
AF_2010_repII_A10DRAFT_10011511	3300000816	Forest Soil	MMKPKHYAWYARIEQEGRHFRVYYQHHYPRGIVEEERDPRRFNSLEEAEQFAEDLRRANRIYMALDKGHLGKHR*
AF_2010_repII_A10DRAFT_10055363	3300000816	Forest Soil	MFKRHYAWHVRIQQEGGDFRIYYQHDFPRGVIEEERDPRRFNSLEEAEQFAKDVRRANRIFTALDRGRH*
AF_2010_repII_A10DRAFT_10253241	3300000816	Forest Soil	MFKRHYAWKVRIQQENGQYRIYYQHDFPRGVVEEERDPRRFKSLEEAEQFAEDVRRANRIFTALDRGRH
Ga0062595_1000756912	3300004479	Soil	MVKRKHYTWHVRVQQEGGHFRVYYQHHYPRGLVEEERDTRRFNSLEEAEQFAKDMRRTNRIFTGLDAENGP*
Ga0066395_107095722	3300004633	Tropical Forest Soil	MAIRGFKRHYAWHVRIQQEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGY*
Ga0066388_1000117934	3300005332	Tropical Forest Soil	MFKRHYAWQVRIQPEGGHFRVYYQHQFPRGVIEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH*
Ga0066388_1007824584	3300005332	Tropical Forest Soil	MFKKHYAWHVRIQQEGGHFRVYYQHHFPRGIVEEERDPRRFNSFEEAEQFAKEVRRANRIFTELDKGV*
Ga0066388_1033356611	3300005332	Tropical Forest Soil	MFKKHYAWHVRIQQEGGHFRVYSNTTPRGIVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDK
Ga0066388_1076237671	3300005332	Tropical Forest Soil	MFKRHYAWQVRIEPEGGHFRIYFQHQFPRGVVEEERDPRRFNSSEEAEQFAEDVRRANRIFTALDKGY*
Ga0008090_152317722	3300005363	Tropical Rainforest Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEKERDPRRFNSLEKAEQFAEDVRRANRIFTALDKGRH*
Ga0066903_1002184013	3300005764	Tropical Forest Soil	MAIRGFKRHYAWYVRIQQEGPHFRVYYQHHFPRGVIEEERDPRRFKSLAEAEQFTEELRRANRIFTALDKGY*
Ga0066903_1004144003	3300005764	Tropical Forest Soil	MFKRHYAWKVRIQQEGGHFRIYYQHDFPRGVIEEERDPRRFSSLEEAEKFAEDVRRANRIFTALDRGRH*
Ga0066903_1019060382	3300005764	Tropical Forest Soil	MFKRHYAWKVRIEPEGGHFRIFYQHDFPRGVIEEERDPRRFSSLEEAEKFAEDVRRANRIFTAMDRGRH*
Ga0066903_1020563402	3300005764	Tropical Forest Soil	MMKPKHYAWYARIEQEGGHFRVYYQHHYPRGIVEEERDPRRFNSLEEAEQFAEDLRRANRIYMALDKGHFGKHR*
Ga0066903_1050262822	3300005764	Tropical Forest Soil	TMFKRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFSSLEEAEKFAEDVRRANRIFTALDRGRH*
Ga0066903_1061765221	3300005764	Tropical Forest Soil	MFKRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTALDKGRH*
Ga0066903_1076196531	3300005764	Tropical Forest Soil	MFKRHYAWHVRIQQEGGHFRVYYQHHFPRGIVEEERDPRRFKSLEEAEQFAEELRRANRIFTALDKGY*
Ga0075018_108256722	3300006172	Watersheds	MLNQKHYSWHVRTQQEGQHFRVYYQHHYPNGIVEENRDTRRFNSLEEAEQFAKDIRRTNRIFTGLDAENTEGVA
Ga0105242_119235282	3300009176	Miscanthus Rhizosphere	MLKQKHYAWHVRIQQEGEHFRVYYQHHYPNGIVEENRDTRRFNSLEEAEQFAEGVRRANRIFTELDKGV*
Ga0126374_100054905	3300009792	Tropical Forest Soil	MAIRGFKRHYAWHVRIQQEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGH*
Ga0126374_106102201	3300009792	Tropical Forest Soil	MAIRGFKRHYAWHVRIQQEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDKGV*
Ga0126380_110080051	3300010043	Tropical Forest Soil	MFKKHYGWHVRIQQEGGHFRIYYQHHYPRGLVEEERDPRRFSLEEAEQFAKDVRRANRIFTELV*
Ga0126380_114405021	3300010043	Tropical Forest Soil	MAIRGFKRHCAWHVRIQQEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGH*
Ga0126384_123910421	3300010046	Tropical Forest Soil	MFKRHYAWQVRIQPEGGHFRVYYQHQFPRGVIEEECDPRRFNSLEEAEQFAEDVRRANRI
Ga0126382_100128053	3300010047	Tropical Forest Soil	MAIRGFKRHYAWHVRIQHEGGQFRVYYQHHFPRGIIEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKAH*
Ga0126370_100411753	3300010358	Tropical Forest Soil	MAIREFKRHYAWHVRIQQEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGH*
Ga0126376_112657832	3300010359	Tropical Forest Soil	MFKKHYGWHVRIQQEGGHFRIYYQHHYPRGLVEEERDPRRFSLEEAEQFARDVRRANRIFTELV*
Ga0126372_114526452	3300010360	Tropical Forest Soil	MFKRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFSSLEEAEKFAEDVRRANRIFTALDKGRH*
Ga0126378_100911024	3300010361	Tropical Forest Soil	MAIRGFKRHYAWHVRIQHEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGH*
Ga0126378_128824121	3300010361	Tropical Forest Soil	HTVFKRHYAWEVLSNKRVETSAIYYQHHFPRGVVEEERDPRRFNSLEKAEQFAEDVRRANRIFTALDKGRH*
Ga0126377_102270013	3300010362	Tropical Forest Soil	MAIRGFKRHYAWQVRIQHEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGH*
Ga0126377_106610942	3300010362	Tropical Forest Soil	MFKKHYGWHVRIQQEGGHFRIYYQHHYPRGLVEEERDPGRFSLEEAEQFAQDVRRANRIFTELV*
Ga0126379_106333262	3300010366	Tropical Forest Soil	MFKRHYAWQVRIEPEGGHFRIYYQHQFPRGVVEEERDPRRFNSSEEAEQFAEDVRRANRIFTALDKGY*
Ga0126379_108463622	3300010366	Tropical Forest Soil	MFERHYAWHVRIQQEGGDFRIYYQHNFPRGVVERERDPRRFNSLEEAEKFAEDVRRANRIFTALDRGRH*
Ga0126379_108921222	3300010366	Tropical Forest Soil	MAIRGFKRHYAWHVRIQQEGGQFRVYYQHQFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGY*
Ga0126383_103557363	3300010398	Tropical Forest Soil	MAIRGFKRHYAWHVRIQHEGGQFRVYYQHHFPRGIIEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKGH*
Ga0137376_101642421	3300012208	Vadose Zone Soil	TMLNQKHYNWHVRTQQEGEHFRVYYQHHYPNEIVEETRDPRRFNSLEEAEQFAKNIRRTNRIYAELYDENTEGVA*
Ga0126375_107752781	3300012948	Tropical Forest Soil	MFKRHYAWQVRIQPEGGHFRVYYQHQFPRGVIEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDKGY*
Ga0126369_102853253	3300012971	Tropical Forest Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEEERDPRRFNSLEKAEQFAEDVRRANRIFTALDKGRH*
Ga0126369_108042882	3300012971	Tropical Forest Soil	MFKKHYAWHVRIQQEGGHFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDKGVRSRVLL
Ga0132258_103175191	3300015371	Arabidopsis Rhizosphere	MVKRKHYTWHVRIQPEGGHFRVYYQHHYPRGLIEEECDPRRFKSLEEAEQFAEDVRRTNRIYTGLDKGI*
Ga0132258_122172153	3300015371	Arabidopsis Rhizosphere	MLKRKHYTWHVRIQQEGGHFRVYYRHHYPRGLVEENRDTRRFNSLEEAEQFAKDMRRTNRIFTGLDAENGP*
Ga0132256_1006494371	3300015372	Arabidopsis Rhizosphere	MLKRKHYTWHVRIQPEGGHFRVYYQHHYPRGLIEEECDPRRFKSLEEAEQFAEDVRRTNRIYTGLDKGI*
Ga0182041_1000008131	3300016294	Soil	MFNRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTALGKGRH
Ga0182032_1000024516	3300016357	Soil	MFKRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEERDPRRFNSLEEAEKFAEDVRRANRIFTALDRGRE
Ga0182040_101340081	3300016387	Soil	KVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFSSLEEAEQFAEDVRRANRIFTALGKGR
Ga0182037_100469404	3300016404	Soil	MFKRHYAWKVRIEPEGGHFRIFYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTALGKGRH
Ga0182039_100114218	3300016422	Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEEERDPRRFNSLEEAEQFAEDVRRANRIFTALDKGRH
Ga0182038_100323545	3300016445	Soil	MFKKHYAWHVRIQQEGGHFRVYYQHHFPRGTVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDKGV
Ga0182038_100719992	3300016445	Soil	MFKRHYAWKVRIEPEGGHFRIFYQHDFPGGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTALDKGRH
Ga0184605_105305101	3300018027	Groundwater Sediment	MLNQKHYPWHVRIQQEGEHFRVYYQHHYPNEIRRFNSLEEAEQFAKNIRRTNRIFTELCAENTEGVA
Ga0184608_104627131	3300018028	Groundwater Sediment	MLNQKHYNWHVRTQQEGEHFRVYYQHHYSNGIVEENRDPRRFNSLEEAEQFAKNIRRTNRIFTELCAENTEGVA
Ga0184621_102739351	3300018054	Groundwater Sediment	MLNQKHYNWHVRTQQEGEHFRVYYQHHYPNEIVEETRDPRRFNSLEEAEQFAKYVRRANRIYTELALRREH
Ga0184635_100312063	3300018072	Groundwater Sediment	MHVRIQQEGKHFRVYYKHHYPKGPVENRDPRRFNSLEEAEQFAKYVRRANRIYTELALRREH
Ga0193705_10710591	3300019869	Soil	MLNQKHYNWHVRTQQEGEHFRVYYQHHYPNEIVEETRDPRRFNSLEEAEQFAKNVRRTNRIFTGLCAENTEGVA
Ga0193701_10992761	3300019875	Soil	MLNQKHYNWHVRTQQEGEHFRVYYQHHYSNGIVEENRDPRRFNSLEEAEQFAKNIRRTNRIYAELYDENTEGVA
Ga0126371_101752323	3300021560	Tropical Forest Soil	MAIRGFKRHYAWHVRIQQEGGQFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFANVVRRANRIFTELDKG
Ga0126371_102653653	3300021560	Tropical Forest Soil	MFKRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTALDKGRH
Ga0126371_106804791	3300021560	Tropical Forest Soil	MFKRHYAWKVRIQQEGGHFRIYYQHDFPRGVIEEERDPRRFSSLEEAEKFAEDVRRANRIFTALDRGRH
Ga0126371_130470351	3300021560	Tropical Forest Soil	MFKRHYAWQVRIEPEGGHFRIYFQHQFPRGVVEEERDPRRFNSSEEAEQFAEDVRRANRIFTALDKGY
Ga0209069_102748221	3300027915	Watersheds	MLNQKHYTWHVRTQQESEHFRVYYQHHYPNGKVEENRDPRRFNSLEEAEQFAKKVRRTNRIYTELCPENT
Ga0307293_101572461	3300028711	Soil	MLNQKHYNWHVRTQQEGEHFRVYYQHHYPNEIVEETRDPRRFNSLEEAEQFAKNVRRTNRIDVLPGNARV
Ga0307280_101643462	3300028768	Soil	MLNQKHYNWHVRTQQEGEHFRVYYQHHYSNGIVEENRDPRRFNSLEEAEQFAKYVRRANRIYTELALRREH
Ga0307323_100619903	3300028787	Soil	MLNQKRHTCNVRTQQESGHFRVYYQHRYPKGPVENRDTRRFNSLEEAEQFAKYVRRANRIYAELCGENTEGVA
Ga0307290_101718182	3300028791	Soil	MLNQKHYPWHVRTQQEGEHFRVYYQHHYPNEIRRFNSLEEAEQFAKNIRRTNRIFTELCAENTEGVA
Ga0307290_104024031	3300028791	Soil	RTQQEGEHFRVYYQHHYSNGIVEENRDPRRFNSLEEAEQFAKYVRRANRIYTELALRREH
Ga0307296_100166148	3300028819	Soil	MLNQKHYPWHVRTQQEGEHFRVYYQHHYPNEIRRFNSLEEAEQFAKNIRRTNRIFTELCAENT
Ga0075373_112025282	3300030945	Soil	MLNQKHYTWHVRTQLEGGHFRVYYRHHYPNGKVEENRDPRRFNSLEEAEQFAKTVRRTNRIFRGLDAENTKGVD
Ga0307497_103030141	3300031226	Soil	MQVRIQQEGGHFRVYYQHRYPKGPAENRDTRRFNSLEEAEQFAKYVRRANRIYAELCGENTEGMA
Ga0318534_101767021	3300031544	Soil	MFKRHYAWHVRIQQEGGDFRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH
Ga0318541_100256435	3300031545	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEQRDPRRFSSLEEAEQFAKDVR
Ga0318541_100470193	3300031545	Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEEERDPRRFNSLEEAEQFAEGVRRANRIFTALDKGRH
Ga0318528_104133611	3300031561	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEERDPRRFSSLEEAEQFAKEVSRANRIFTA
Ga0318515_101513131	3300031572	Soil	MFKKHYAWHVRIQQEGGHFRVYYQHHFPRGIGDPRRFKSLEEAEQFAKDMRRANRIFTELDKGV
Ga0310915_100093905	3300031573	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEERDPRRFSSLEEAEQFAKEVSRANRIFTALDRGRH
Ga0310915_100350946	3300031573	Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEEERDPRRFNSLEEAEQFAEGVRRANRIFTALDKGR
Ga0310915_100452791	3300031573	Soil	MFKHYAWHVRIQQEGGHFRVYYQHHFPRGTVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDKGV
Ga0318561_101414053	3300031679	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEERDPRRFSSLEEAEQFAKEVSRANRIFTALDRG
Ga0318561_103225171	3300031679	Soil	MFKRHYAWHVRIQQEGRDVRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH
Ga0318561_106074892	3300031679	Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEEERDPRRFNSLEEAEQFAEGVRRANRIFTALDK
Ga0318574_104778291	3300031680	Soil	MFKRHYAWHVRIQQEGRDVRIYYKHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH
Ga0318572_106869621	3300031681	Soil	MFKRHYAWHVRIQQEGGDFRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRIFTAL
Ga0306917_100592153	3300031719	Soil	MFKRHYAWHVRIQQEGGDFRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRA
Ga0306917_102168532	3300031719	Soil	MFKRHYAWKVRIDPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTA
Ga0306917_103126893	3300031719	Soil	RHYAWKVRIEPEGGHFRIFYQHDFPRGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTALDKGRH
Ga0318500_102991681	3300031724	Soil	MFKKHYAWHVRIQQEGGHFRVYYQHHFPRGIVEEERDPRRFNSLEEAEQFAKDVRRANRIFHRAV
Ga0318537_101727941	3300031763	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEERDPRRFSSLEEAEQFAKEVRRANRIFTALDRGRH
Ga0318521_101619932	3300031770	Soil	MFKRHYAWKVRIDPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTALDKGRH
Ga0318546_107344591	3300031771	Soil	MFKRHYAWKVRIEPEGGHFRIFYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTA
Ga0318517_104940451	3300031835	Soil	MFKRHYAWHVRIQQEGGDFRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRI
Ga0306919_100391912	3300031879	Soil	MFKRHYAWKVRIEPEGGHFRIFYQHDFPRGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTALDKGRH
Ga0306919_108542201	3300031879	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEERDPRRFSSLEEAEQFAKDVRRANRIFTALDRGRH
Ga0306919_112487791	3300031879	Soil	VVVTHNVQKHYAWHVRIQQEGGHFRVYYQHHFPRGTVEEERDPRRFNSLEEAEQFAKDVRRANRIFTELDKGV
Ga0306925_1001637413	3300031890	Soil	MFKRHYAWKVRIDPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTALGKGRH
Ga0318536_103356041	3300031893	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTALDKGRH
Ga0318530_102124321	3300031959	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEQRDPRRFSSLEEAEQFAKDVRRANRIFTALDRGRH
Ga0318531_101849332	3300031981	Soil	MFKHYAWHVRIQQEGGDFRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH
Ga0306922_102960181	3300032001	Soil	FKRHYAWKVRIEPEGGHFRIFYQHDFPRGVIEEERDPRRFNSLEEAERFAEHVRRANRIFTALDKGRH
Ga0306922_116273571	3300032001	Soil	MFKRHYAWKVRIEPEGGHFRIYYQHDFPRGVIEEERDPRRFNSLEEAEQFAEDVRRANRIFTALGKGRH
Ga0318558_100694173	3300032044	Soil	MFKRHYAWHVRIEPEGGHFRIYYQHNFPRGVVEEQRDPRRFSSLEEAEQFAKDVRR
Ga0318525_104134761	3300032089	Soil	MFKRHYAWHVRIQQEGRDVRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRI
Ga0318577_102637952	3300032091	Soil	MFKRHYAWHVRIQQEGGRFHVYYQHHFPRGVVEEERDPRRFNSLEEAEQFAEGVRRA
Ga0310914_112036212	3300033289	Soil	MFKHYAWHVRIQQEGGHFRVYYQHHFPRGTVEEERDPRRFNSLEQAEQFAKDVRRANRIFTELDKGV
Ga0318519_100616991	3300033290	Soil	AMFKRHYAWHVRIQQEGRDVRIYYQHNFPRGVVEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090815

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences