Metagenome Family F090829

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090829
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	62 residues
Representative Sequence	MAALKFLCPETGNVVDTEIDLDAASFARLPREDTRLACPHCEQPHILAGVSAWLGELQLEYE
Number of Associated Samples	82
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.77 %
% of genes near scaffold ends (potentially truncated)	22.22 %
% of genes from short scaffolds (< 2000 bps)	87.04 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (29.630 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.741 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.00% β-sheet: 24.44% Coil/Unstructured: 65.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03411	Peptidase_M74	1.85
PF13412	HTH_24	1.85
PF11306	DUF3108	1.85
PF13481	AAA_25	0.93
PF00072	Response_reg	0.93
PF07883	Cupin_2	0.93
PF04226	Transgly_assoc	0.93
PF13519	VWA_2	0.93
PF00857	Isochorismatase	0.93
PF09250	Prim-Pol	0.93
PF02641	DUF190	0.93
PF02586	SRAP	0.93
PF13792	Obsolete Pfam Family	0.93
PF00126	HTH_1	0.93
PF01464	SLT	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3770	Murein endopeptidase MepA (D-alanyl-D-alanine-endopeptidase)	Cell wall/membrane/envelope biogenesis [M]	1.85
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.93
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.93
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.93
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
All Organisms	root	All Organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
cellular organisms	root	All Organisms → cellular organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.70 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.78 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.85 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.70 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.78 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.93 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.70 %
Bradyrhizobium sp. ORS 278	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	1.85 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.93 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.93 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16968410	Not Available	1352	Open in IMG/M
2170459014\|G1P06HT02IY95I	Not Available	615	Open in IMG/M
2170459020\|G1P06HT02FX2S5	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	660	Open in IMG/M
2228664021\|ICCgaii200_c0141978	Not Available	555	Open in IMG/M
2228664021\|ICCgaii200_c0388933	Not Available	550	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0431595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	601	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100552672	Not Available	526	Open in IMG/M
3300000567\|JGI12270J11330_10021063	All Organisms → cellular organisms → Bacteria	4027	Open in IMG/M
3300000567\|JGI12270J11330_10042021	Not Available	2543	Open in IMG/M
3300000789\|JGI1027J11758_12992285	Not Available	866	Open in IMG/M
3300005164\|Ga0066815_10074862	Not Available	600	Open in IMG/M
3300005332\|Ga0066388_100020120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	5803	Open in IMG/M
3300005764\|Ga0066903_102359430	Not Available	1028	Open in IMG/M
3300005764\|Ga0066903_103402805	Not Available	858	Open in IMG/M
3300005764\|Ga0066903_103560155	Not Available	839	Open in IMG/M
3300006058\|Ga0075432_10468425	Not Available	556	Open in IMG/M
3300006172\|Ga0075018_10245785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	865	Open in IMG/M
3300006174\|Ga0075014_100654453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	606	Open in IMG/M
3300006175\|Ga0070712_100384006	Not Available	1157	Open in IMG/M
3300006175\|Ga0070712_100708842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	858	Open in IMG/M
3300006845\|Ga0075421_101854587	Not Available	647	Open in IMG/M
3300009156\|Ga0111538_10695316	Not Available	1289	Open in IMG/M
3300009521\|Ga0116222_1003119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8449	Open in IMG/M
3300009521\|Ga0116222_1049694	Not Available	1829	Open in IMG/M
3300009524\|Ga0116225_1569256	Not Available	501	Open in IMG/M
3300009525\|Ga0116220_10099559	Not Available	1231	Open in IMG/M
3300009553\|Ga0105249_12632901	Not Available	575	Open in IMG/M
3300010379\|Ga0136449_100392587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2468	Open in IMG/M
3300012897\|Ga0157285_10377898	Not Available	504	Open in IMG/M
3300012955\|Ga0164298_10739172	Not Available	696	Open in IMG/M
3300012957\|Ga0164303_11167681	Not Available	561	Open in IMG/M
3300012957\|Ga0164303_11345475	Not Available	531	Open in IMG/M
3300012958\|Ga0164299_10146059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1302	Open in IMG/M
3300012958\|Ga0164299_11275546	Not Available	560	Open in IMG/M
3300012960\|Ga0164301_11152256	Not Available	620	Open in IMG/M
3300012960\|Ga0164301_11919351	Not Available	501	Open in IMG/M
3300012984\|Ga0164309_11368816	Not Available	602	Open in IMG/M
3300012985\|Ga0164308_11490429	Not Available	621	Open in IMG/M
3300012987\|Ga0164307_11415111	Not Available	586	Open in IMG/M
3300012987\|Ga0164307_11926289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	501	Open in IMG/M
3300012988\|Ga0164306_11711814	Not Available	546	Open in IMG/M
3300015371\|Ga0132258_13992788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1001	Open in IMG/M
3300015373\|Ga0132257_101760839	Not Available	795	Open in IMG/M
3300016270\|Ga0182036_10154400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1638	Open in IMG/M
3300016294\|Ga0182041_10153080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1782	Open in IMG/M
3300016319\|Ga0182033_10079162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2346	Open in IMG/M
3300016319\|Ga0182033_10139784	Not Available	1852	Open in IMG/M
3300016357\|Ga0182032_10226073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1440	Open in IMG/M
3300016387\|Ga0182040_10112305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1872	Open in IMG/M
3300016387\|Ga0182040_10870159	Not Available	746	Open in IMG/M
3300016404\|Ga0182037_10475807	Not Available	1043	Open in IMG/M
3300016404\|Ga0182037_10673722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300016404\|Ga0182037_10910862	Not Available	763	Open in IMG/M
3300016422\|Ga0182039_11143489	Not Available	702	Open in IMG/M
3300016445\|Ga0182038_10058318	Not Available	2619	Open in IMG/M
3300016445\|Ga0182038_10569679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	974	Open in IMG/M
3300016445\|Ga0182038_10877882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300017822\|Ga0187802_10339894	Not Available	589	Open in IMG/M
3300017823\|Ga0187818_10146392	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300017932\|Ga0187814_10115344	Not Available	994	Open in IMG/M
3300017932\|Ga0187814_10205306	Not Available	741	Open in IMG/M
3300017932\|Ga0187814_10403135	Not Available	533	Open in IMG/M
3300017933\|Ga0187801_10388170	Not Available	579	Open in IMG/M
3300017943\|Ga0187819_10758223	Not Available	546	Open in IMG/M
3300017943\|Ga0187819_10765033	Not Available	543	Open in IMG/M
3300017955\|Ga0187817_10148258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1491	Open in IMG/M
3300017955\|Ga0187817_10616314	Not Available	692	Open in IMG/M
3300017973\|Ga0187780_10738327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300017974\|Ga0187777_10451785	Not Available	893	Open in IMG/M
3300017995\|Ga0187816_10243362	Not Available	785	Open in IMG/M
3300018007\|Ga0187805_10393528	Not Available	643	Open in IMG/M
3300021478\|Ga0210402_11620745	Not Available	574	Open in IMG/M
3300025915\|Ga0207693_10549330	Not Available	901	Open in IMG/M
3300026876\|Ga0207837_1019076	Not Available	572	Open in IMG/M
3300026881\|Ga0207739_1030315	Not Available	549	Open in IMG/M
3300026927\|Ga0207744_1016577	Not Available	694	Open in IMG/M
3300026981\|Ga0207822_1020213	Not Available	724	Open in IMG/M
3300027042\|Ga0207766_1019829	Not Available	760	Open in IMG/M
3300027252\|Ga0209973_1042393	Not Available	670	Open in IMG/M
3300027568\|Ga0208042_1163974	Not Available	555	Open in IMG/M
3300027570\|Ga0208043_1074656	Not Available	948	Open in IMG/M
3300027625\|Ga0208044_1002878	Not Available	8173	Open in IMG/M
3300027717\|Ga0209998_10059090	Not Available	900	Open in IMG/M
3300027905\|Ga0209415_10223324	Not Available	1739	Open in IMG/M
3300031170\|Ga0307498_10037313	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300031719\|Ga0306917_10323294	All Organisms → cellular organisms → Bacteria → Proteobacteria	1195	Open in IMG/M
3300031744\|Ga0306918_11462781	Not Available	523	Open in IMG/M
3300031744\|Ga0306918_11495558	Not Available	516	Open in IMG/M
3300031781\|Ga0318547_11018858	Not Available	518	Open in IMG/M
3300031890\|Ga0306925_11913246	Not Available	563	Open in IMG/M
3300031910\|Ga0306923_10943561	Not Available	942	Open in IMG/M
3300031910\|Ga0306923_12068235	Not Available	576	Open in IMG/M
3300031941\|Ga0310912_10813046	Not Available	722	Open in IMG/M
3300031941\|Ga0310912_10905920	Not Available	679	Open in IMG/M
3300031942\|Ga0310916_10394321	Not Available	1178	Open in IMG/M
3300031942\|Ga0310916_10527230	Not Available	1006	Open in IMG/M
3300031945\|Ga0310913_10438978	Not Available	927	Open in IMG/M
3300031947\|Ga0310909_10079329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2600	Open in IMG/M
3300031954\|Ga0306926_12953573	Not Available	509	Open in IMG/M
3300032076\|Ga0306924_10166374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2529	Open in IMG/M
3300032076\|Ga0306924_11295133	Not Available	783	Open in IMG/M
3300032180\|Ga0307471_100543748	Not Available	1315	Open in IMG/M
3300032261\|Ga0306920_100976960	Not Available	1234	Open in IMG/M
3300033289\|Ga0310914_11858514	Not Available	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.81%
Host-Associated	Host-Associated	8.33%
Engineered	Engineered	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.85%
Aquatic	Environmental → Aquatic	12.96%
Plants	Host-Associated → Plants	8.33%
Solid Waste	Engineered → Solid Waste	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.85%
Freshwater	Environmental → Aquatic → Freshwater	11.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Sediment	Environmental → Aquatic → Sediment	1.85%
Grass	Engineered → Solid Waste → Grass	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.11%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.85%
Composting	Engineered → Solid Waste → Grass → Composting	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.85%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	11.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.85%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026876	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58 (SPAdes)	Environmental	Open in IMG/M
3300026881	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 15 (SPAdes)	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00014440	2088090014	Soil	MAVLKFLCPTSGNEVDTGLDLDARTFAGLLRDHTKLSCPHCPNPHLLATVQAWLGELQPEYE
2PV_05022620	2170459014	Switchgrass, Maize And Mischanthus Litter	MAALKFMCPVTGRHVDTGLELNAQSFANLSRESTELVCPHCDRPHILAGVSAWLGELRTRIRVIL
2NP_03845680	2170459020	Switchgrass, Maize And Mischanthus Litter	MAALKLLKFMCPVTGRHVDTGLELDAQSFANLSGESTELVCPHCDQPHILTGVSAWLGELQPEYE
ICCgaii200_01419781	2228664021	Soil	MYWSFVMASPFKFICPATDNEVDTGIHLDAKRFAALRRDITELNCPHCPQPHLLAGVQAWLGDIEPEHG
ICCgaii200_03889331	2228664021	Soil	MPPLKFICPATGNEVDTGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGELQPEYE
ICChiseqgaiiDRAFT_04315951	3300000033	Soil	FICPATDNEVDTGIHLDAKRFAALRRDITELNCPHCPQPHLLAGVQAWLGDIEPEHG*
INPhiseqgaiiFebDRAFT_1005526721	3300000364	Soil	MAVLKFLCPTSGNEVDTGLDLDARTFAGLLRDHTKLSCPHCPNPHLLATVQAWLGELQPEYE*
JGI12270J11330_1002106310	3300000567	Peatlands Soil	MEGFVMPPLRFICPATGNEVDTGIDLDVQSFAALPRNITPFCCPHCDEPHLLAGVQAWLGELQPDHE*
JGI12270J11330_100420214	3300000567	Peatlands Soil	MGPLKFICPSTSNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPEHSVVSQFE*
JGI1027J11758_129922851	3300000789	Soil	MAVLKFLCPTSGNEVDTXLDLDARTFAGLLRDHTKLSCPHCPNPHLLATVQAWLGELQPEYEWPAGA*
Ga0066815_100748622	3300005164	Soil	MPPLKFICPATGNEVDTGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGQLQPEYE*
Ga0066388_1000201203	3300005332	Tropical Forest Soil	MAALKFLCPETGNVVDTEIDLDAASFARLPREDTRLACPHCEQPHILAGVSAWLGELQLEYE*
Ga0066903_1023594302	3300005764	Tropical Forest Soil	MPVLKFMCPVTGRCVDTGLELDPKSFASLPRDSTELACPDCEQLHILAGVSAWLGELEPVE*
Ga0066903_1034028052	3300005764	Tropical Forest Soil	FTCPATDNEVDTGLDMNPTEFAELPRETTRLNCPHCHGSHLLAGVSAWLGELQSEE*
Ga0066903_1035601551	3300005764	Tropical Forest Soil	MKAFKFMCPRTGREVLTGMELDATTFADLSRETLLTCPYCDEPHPLAHVSAWLGELFD*
Ga0075432_104684252	3300006058	Populus Rhizosphere	MAALKFMCPVTGRHVDTGLELDAQSFANLSRESTELVCPHCDQPHILAGVSAWLGELQPEYE*
Ga0075018_102457853	3300006172	Watersheds	MAALKFICPATGNEVDTGLDLDAQRFVALPRDTTELNCPHCEKPHVLAGVSAWLGELQPEYE*
Ga0075014_1006544531	3300006174	Watersheds	LIAIDRVRVTMAVLKFVCPMSGNEVDTGLDMDARSFASLPRDRTELSCPHCPDPHLLATVQAWLGELQPEYE*
Ga0070712_1003840062	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPPLKFICPATGNEVDTGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGELQPEYE*
Ga0070712_1007088421	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPPLKFICPATGNEVDPGIDLDVQSFAALPRDITPFGCPHCADPHLLAHVQAWLGELQPEYE*
Ga0075421_1018545872	3300006845	Populus Rhizosphere	MAALKFMCPVTGRHVDTGLELDAQSFANLSRESTELVCPHCDQPHILAGVSAWLGELQPEY*
Ga0111538_106953161	3300009156	Populus Rhizosphere	MPPLKFICPTTGNEVDTGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGELQPEYE*
Ga0116222_10031195	3300009521	Peatlands Soil	MEGFVMPPLRFICPATGNEVDTGIDLDVQSFAALPRNITPFCCPHCDEPHLLAGVQAWLAELQPDHE*
Ga0116222_10496943	3300009521	Peatlands Soil	MGPLKFICPSTGNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPEHSVVSQFE*
Ga0116225_15692561	3300009524	Peatlands Soil	MGPLKFICPSTGNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPEHSVAA*
Ga0116220_100995593	3300009525	Peatlands Soil	MGQLKFICPSTGNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPE
Ga0105249_126329012	3300009553	Switchgrass Rhizosphere	LITTDRVKGSAMAVLKFLCPTSGNEVDTGLDLDARTFAGLLRDHTKLSCPHCPNPHLLATVQAWLGELQPEYE*
Ga0136449_1003925873	3300010379	Peatlands Soil	MVLLKFICPATGNEVNTGLDIDAQSFAGMSRETTFLDCPHCPEPHQLAGVSAWLGELHPEHE*
Ga0157285_103778982	3300012897	Soil	MAALKFMCPVTGRHVDTGLELDAQSFANLSRESTELVCPHCDQPHILADVSAWLGELQPEY*
Ga0164298_107391722	3300012955	Soil	MPPLKFICPATGNEVDTGIDLDVQSFAALPRNITPFGCPHCAEPHLLAHVQAWLGELQPATSDTAVLSSSTQAGV*
Ga0164303_106176852	3300012957	Soil	MSVLKFVCPGTGNVVDTGMELDAQSFSHLPRNIATLGCPHCEQPHLLAHVQAWLGNIDSECE*
Ga0164303_111676812	3300012957	Soil	MPPLKFICPATGNEVDPGIDLDVQSFAALPRNITPFGCPHCAEPHLLAHVQAWLGELQPATSDTAVLS
Ga0164303_113454751	3300012957	Soil	MCPITGNEVDTGIELDAASFASLPRDRTELSCPYCNKPHVLAGVSAWLGELQPEYE*
Ga0164299_101460592	3300012958	Soil	MPPLKFICPATGNEVDTGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGELQPATSDTAVPSSST*
Ga0164299_112755461	3300012958	Soil	MATLNSMWGRPTNVIDTGIDLDAASFASLPRDSTELSCPHCNKPHLLAGVSAWLGELQPEYE*
Ga0164301_111522562	3300012960	Soil	MAALKFICPATGNEVDTGLDLDAQRFVALPRDTTELNCPHCEKPHVLASVSAWLGELQPEYE*
Ga0164301_119193511	3300012960	Soil	MPPLKFICPATGNEVDPGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGELQPEYE*
Ga0164302_117966831	3300012961	Soil	MSVLKFVCPGTGNVVDTDMELDAQSFAHLPRNIATLGCPHCEQPHLLAHVQAWLGDIDSECE*
Ga0164309_113688162	3300012984	Soil	MATLNFMCPSTGNVVDTGIDLDAARFASLPRDSTELGCPHCNKPHLLAGVSAWLGELQPEYE*
Ga0164308_114904291	3300012985	Soil	MPPLKFICPATGNEVDPGIDLDVQSFAALPRNITPFGCPHCAAPHLLAHVQAWLGELQPATSDTAVPASSTQARRCVG*
Ga0164307_114151111	3300012987	Soil	MPPLKFICPATGNEVDTGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGEIQPATSDTAVPSSSTSQARRCVG
Ga0164307_119262892	3300012987	Soil	CPATGNVVDTGIDLDVQSFAALPRNITPFGCPHCAAPHLLAHVQAWLGELQPATSDTAVPSSST*
Ga0164306_117118141	3300012988	Soil	MPPLKFICPATGNEVDTGIDLDVQSFATLPRNITPFGCPHCADPHLLAHVQAWLGELQPATSDTAVPS
Ga0132258_139927882	3300015371	Arabidopsis Rhizosphere	MALLKFNCPTTGREVDTGIDLDAQIFAALPRRITAWTCPHCEEPHLLAHVQAWLGEL*
Ga0132256_1004075922	3300015372	Arabidopsis Rhizosphere	MSVLKFVCPGTGNVVDTGMELDAQSFSHLPRNIATLGCPHCEHPHLLAHVQAWLGNIDSECE*
Ga0132257_1017608391	3300015373	Arabidopsis Rhizosphere	MAVLNFMCPVTGRRVDTGLELDPKSFASLPRDSTELACPACEQLHILAGVSAWLGELEPVE*
Ga0182036_101544002	3300016270	Soil	MAALKFLCPETGNVVDTEIDLDATSFARLPSEDTRLACPHCEQPHILAGVSAWLGELQPEYE
Ga0182041_101530803	3300016294	Soil	MAALKFLCPKTGDVVDTEIDLDTTSFARLPSEDTCLACPHCEQPHILAGVSAWLGE
Ga0182033_100791621	3300016319	Soil	MAVLKFMCPVTGHHVDTGLELDVQSFANLPRDRTELACPHCDQPHILASVSAWLGE
Ga0182033_101397844	3300016319	Soil	MAALKFLCPKTGDVVDTEIDLDTISFARLPSENTRLACPHCEQPHILAGVSGWLGE
Ga0182032_102260733	3300016357	Soil	MAALKFLCPNTGDVVDTEIDLDTTSFARLPREDTRLACPHCEQPHILAGVSAWLEE
Ga0182040_101123052	3300016387	Soil	MAVLKYICPVTGRHVDTGLELDVQSFANLPRDRTELACPHCDQPHILASVSAWVGELQPV
Ga0182040_108701592	3300016387	Soil	MAALKFLCPETGNVVDTEIDLDTTSFARLPSEDTRLACPHCEQPHILAGVSAWLEE
Ga0182037_104758072	3300016404	Soil	MAVLKFMCPVTGHHVDTGLELDVQSFANLPRDRTELACPHCDQPHILASVSAWLGNSNP
Ga0182037_106737223	3300016404	Soil	MAALKFLCPETGNVVDTEIDLDATSFARLPSEDTRLACPHCEQHILAGVSAWLE
Ga0182037_109108623	3300016404	Soil	DVDVTSFARLPREDTRLACLHCEQRHILAGVSAWLGELQPEYE
Ga0182039_111434892	3300016422	Soil	MAALKFLCPKTGDVVDTEIDLDTTSFARLPSEDTRLACPHCEQHILAGVSAWLEE
Ga0182038_100583185	3300016445	Soil	MAALKFLCPETGNVVDTEIDLDATSFARLPSEDTRLACPHCEQHIL
Ga0182038_105696792	3300016445	Soil	MAALKFLCPETGIVVDTEIDLDAASFARLPRENTRLACPYCEQPHILAGVSAWLGELQLEYE
Ga0182038_108778822	3300016445	Soil	MAVLKFMCPITGHHVDTGLELDVQSFANLPRDRTELACPHCDQPHILASVSAWLGELQPV
Ga0187802_103398941	3300017822	Freshwater Sediment	MPTLRFMCPVTGKVVDTGINLDAPSFASLPRDSTELSRPHCNKPHPLAGVSAWLGELQP
Ga0187818_101463921	3300017823	Freshwater Sediment	MCPISGNEVDTGIDMDAASFASLPRDRTELSCANCNKSHILAGISAWLGKLQPEYE
Ga0187814_101153441	3300017932	Freshwater Sediment	MSALSFMCPVTGKVVDTGVNLDAASFASLPRDSTELSCPHCNKPHLLAGVSAWLGELQPEHE
Ga0187814_102053062	3300017932	Freshwater Sediment	MAVLNFMCPVTGKVVDTGIDVDAASFASLPRDRTELSCPHCNKLHILAGISAWLGELQPEYE
Ga0187814_104031352	3300017932	Freshwater Sediment	MPPLKFICPRTGKEVDTGIDLDVETFAALPRETAELDCPHCDKPHVLAGVSAWPGEPQN
Ga0187801_103881701	3300017933	Freshwater Sediment	MCPITGNEVDTGIDLDAASFASLPRDRTELSCPHCNKSHILAGISAWLGELQPEYE
Ga0187819_107582231	3300017943	Freshwater Sediment	MATLNFMCPATGNVVDTGIDLDAASFASLPRDRTELGCPHCNESHILAGVSAWLGELQPADE
Ga0187819_107650331	3300017943	Freshwater Sediment	MPPLRFICPATGNEVDTGIDLDVQSFAALPRNITPFCCPHCDEPHLLAGVQAWLGELQPDHE
Ga0187817_101482581	3300017955	Freshwater Sediment	MAPLKFICPATDNEVDTGIHLNAQRFAALPRDATELSCPHCSKPHLLAGVQAWLGNIEPERD
Ga0187817_106163143	3300017955	Freshwater Sediment	FMCPVTGKVVDTGIDVDAASFASLPRDRTELSCPHCNKLHILAGSSAWLGELQPEYE
Ga0187780_107383272	3300017973	Tropical Peatland	FWLSPMCIRTGFAMPPLKFICPATGNEIDTGIDLDVQIFAALPRHITAFDCPHCDDPHLLAGVQAWLGELQLHHE
Ga0187777_104517852	3300017974	Tropical Peatland	LVALKFICPTTDKEVDTGLDLDAHSFASLQREATSFACPHCDEPHLLAKVQAWLGDVEPELE
Ga0187816_102433622	3300017995	Freshwater Sediment	MPTLRFMCPVTGKVVDTGINLDAPSFASLPRDSTELSCPHCNKPHLLAGVSAWLGELQPEYE
Ga0187805_103935281	3300018007	Freshwater Sediment	MATLNFMCPATGNVVDTGIDLDAASFASLPRDTTKLSRPHCEKPHILAGVSAWLGELQPEYE
Ga0210402_116207451	3300021478	Soil	MALLKFNCPATGREVDTGIDLDAQSFAALPRVITPLTCPHCDEPHLLAHVQAWLGELEPA
Ga0207693_105493302	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPPLKFICPATGNEVDPGIDLDVQSFAALPRNITPFGCPHCADPHLLAHVQAWLGELQPEYE
Ga0207837_10190762	3300026876	Tropical Forest Soil	MGQGVVMPALSFMCPVTGKVVDTGINLDAASFTSLPRDSTELGCPHCNKPHLLAGVSAWLGELQPEYE
Ga0207739_10303152	3300026881	Tropical Forest Soil	MPMLSFMCPVTGKIVDTGINLDAASFASLPRDSTELGCPHCNKPHLLAGVSAWLGELQPEYE
Ga0207744_10165772	3300026927	Tropical Forest Soil	CRIIGLVMPTLSFMCPVTGKVVDTGINLDAASFASLPRDSTELSCPHCNKPHLLAGVSAWLGELQPEYE
Ga0207822_10202132	3300026981	Tropical Forest Soil	MPTLSFMCPVTGKVVDTGINLDAASFTSLPRDSTELGCPHCNKPHLLAGVSAWLGELQPEYE
Ga0207766_10198291	3300027042	Tropical Forest Soil	MGQGVVMPALSFMCPVTGKVVDTGINLDAASFASLPRDSTELGCPHCNKPHLLAGVSAWLGELQPEYE
Ga0209973_10423931	3300027252	Arabidopsis Thaliana Rhizosphere	MAALKFMCPVTGRHVDTGLELDAQSFANLSRESTELVCPHCDQPHILAGVSAWLGELQPEYE
Ga0208042_11639742	3300027568	Peatlands Soil	ISRPVGFDFRGVRQMGPLKFICPSTSNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPEHSVVSQFE
Ga0208043_10746563	3300027570	Peatlands Soil	MGPLKFICPSTSNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPEHSVVSQFE
Ga0208044_100287810	3300027625	Peatlands Soil	MPPLRFICPATGNEVDTGIDLDVQSFAALPRNITPFCCPHCDEPHLLAGVQAWLAELQPDHE
Ga0209998_100590902	3300027717	Arabidopsis Thaliana Rhizosphere	MAALKFMCPVTGRHVDTGLELDAQSFANLSRESTELVCPHCDQPHILAGVSAWLGELQPE
Ga0209415_102233243	3300027905	Peatlands Soil	MGPLKFICPSTGNQVDTGIEVDAQSFAGLPREITFLDCPHCPEPHQLARVSAWLGELHPEHSVVSQFE
Ga0307498_100373133	3300031170	Soil	MSVLKFVCPGTGNVVDTGMELDTQSFAHLPRNIATLGCPHCEQPHLLAHVQAWLGNIDFECE
Ga0170824_1162621321	3300031231	Forest Soil	MSVLKFVCPGTGNVVDTGMELDAQSFAHLPRNIATLGCPHSEQSHLLAHFQAWLGNIDFECE
Ga0306917_103232943	3300031719	Soil	MPPLKFICPATGNEIDTGIDLDAQIFAALPRDITPFDCPHCDDPHLLAGVQAWLGELQLDHE
Ga0306918_114627812	3300031744	Soil	MPPLKFICPATGNEIDTGIDLDAQIFAALPRDITPFDCPHCDDPHLLAGVQAWLGKLQL
Ga0306918_114955581	3300031744	Soil	MAALKFLCPETGNVVDTEIDLDAASFARLPREDTRLACPYCEQPHILAGVSAWLGELQHEYE
Ga0318547_110188582	3300031781	Soil	MAVLKFMCPVTGHHVDTGLELDVQSFANLPRDRTELACPHCDQPHILASVSAWLGELQPV
Ga0306925_119132462	3300031890	Soil	MAALKFLCPETGNVVDTEIDLDATSFARLPSEDTCLACPHCEQPHILAGVSAWLGELQPEYE
Ga0306923_109435611	3300031910	Soil	MAALKFLCPETGNVVDTEIDLDAASFARLPRENTRLACPHCEQPHILAGVSASLGELQLEYE
Ga0306923_120682352	3300031910	Soil	AAMAALKFLCPETGNVVDTEIDLDAASFARLPRENTRLACPYCEQPHILAGVSAWLGELQHEYE
Ga0310912_108130462	3300031941	Soil	MAALKFLCPETGNVVDTEIDLDAASFARLPRENTRLACPYCEQPHILAGVSAWLGELQHEYE
Ga0310912_109059202	3300031941	Soil	MAALKFLCPNTGDVVDTEIDLDTTSFARLPSEDTRLACPHCEQPHILAGVSAWLGELQPEYE
Ga0310916_103943211	3300031942	Soil	MAVLKFMCPVTGHHVDTGLELDVQSFANLPRDRTELACPHCDQPHILASVSAWLGELQP
Ga0310916_105272302	3300031942	Soil	MAALKFLCPNTGDVVDTEIDLDTTSFARLPREDTRLACPHCEQPHILAGVYAWLGQLQPEYE
Ga0310913_104389782	3300031945	Soil	MAALKFLCPETGNVVDTEIDLDATSFARLPREDTRLACPHCEQPHILAGVSAWLGE
Ga0310909_100793294	3300031947	Soil	MAALKFLCPETGNVVDTEIDLDAASFARLPREDTRLACPYCEQPHILAGVS
Ga0306926_129535732	3300031954	Soil	MAALKFLCPETGNVVDTEIDLDAASFARLPRENTRLACPHCEQPHILAGVSA
Ga0306924_101663745	3300032076	Soil	MAALKFLCPKTGDVVDTEIDLDTISFARLPSENTRLACPHCEQPHILAGVSAWLGE
Ga0306924_112951332	3300032076	Soil	ETGNVVDTEIDLDAASFARLPRENTRLACPYCEQPHILAGVSAWLGELQHEYE
Ga0307471_1005437483	3300032180	Hardwood Forest Soil	MAALKFICPATGNEVDTGLDLDAQRFVALPRDTTELNCPHCEKPHVLAGVSAWLGELQP
Ga0306920_1009769603	3300032261	Soil	MAVLKFRCPVTGHHVDTGLELDAQSFASLPRESTELACPHCEQPHILAGVSAWLGELQPV
Ga0310914_118585142	3300033289	Soil	MAALKFLCPNTGDVVDTEIDLDTTSFARLPREDTRLACPHCEQPHILAGVSAWLGELQPEYE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090829

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences