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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F091034 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 108 |
| Average Sequence Length | 59 residues |
| Representative Sequence | VTRAETRLTAAEAAESVDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRIA |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 108 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 96 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.43 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.444 % of family members) |
| Environment Ontology (ENVO) | Unclassified (45.370 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.86% β-sheet: 0.00% Coil/Unstructured: 51.14% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 108 Family Scaffolds |
|---|---|---|
| PF02754 | CCG | 42.59 |
| PF07729 | FCD | 10.19 |
| PF00441 | Acyl-CoA_dh_1 | 4.63 |
| PF00196 | GerE | 3.70 |
| PF13183 | Fer4_8 | 1.85 |
| PF02771 | Acyl-CoA_dh_N | 1.85 |
| PF00719 | Pyrophosphatase | 0.93 |
| PF07167 | PhaC_N | 0.93 |
| PF13561 | adh_short_C2 | 0.93 |
| PF04199 | Cyclase | 0.93 |
| PF07836 | DmpG_comm | 0.93 |
| PF01636 | APH | 0.93 |
| PF02727 | Cu_amine_oxidN2 | 0.93 |
| PF00378 | ECH_1 | 0.93 |
| PF01590 | GAF | 0.93 |
| PF04909 | Amidohydro_2 | 0.93 |
| PF03704 | BTAD | 0.93 |
| PF13358 | DDE_3 | 0.93 |
| PF12172 | DUF35_N | 0.93 |
| PF13193 | AMP-binding_C | 0.93 |
| PF02770 | Acyl-CoA_dh_M | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 108 Family Scaffolds |
|---|---|---|---|
| COG0247 | Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF | Energy production and conversion [C] | 42.59 |
| COG2048 | Heterodisulfide reductase, subunit B | Energy production and conversion [C] | 42.59 |
| COG1802 | DNA-binding transcriptional regulator, GntR family | Transcription [K] | 10.19 |
| COG2186 | DNA-binding transcriptional regulator, FadR family | Transcription [K] | 10.19 |
| COG1960 | Acyl-CoA dehydrogenase related to the alkylation response protein AidB | Lipid transport and metabolism [I] | 7.41 |
| COG0119 | Isopropylmalate/homocitrate/citramalate synthases | Amino acid transport and metabolism [E] | 0.93 |
| COG0221 | Inorganic pyrophosphatase | Energy production and conversion [C] | 0.93 |
| COG1878 | Kynurenine formamidase | Amino acid transport and metabolism [E] | 0.93 |
| COG3243 | Poly-beta-hydroxybutyrate synthase | Lipid transport and metabolism [I] | 0.93 |
| COG3629 | DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain | Transcription [K] | 0.93 |
| COG3733 | Cu2+-containing amine oxidase | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.93 |
| COG3947 | Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains | Transcription [K] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 44.44% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.04% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 6.48% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 5.56% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 4.63% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 3.70% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 3.70% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.78% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.85% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.85% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.93% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.93% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.93% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.93% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.93% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.93% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001418 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 | Environmental | Open in IMG/M |
| 3300002914 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300005171 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 | Environmental | Open in IMG/M |
| 3300005447 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005950 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 | Environmental | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009522 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG | Environmental | Open in IMG/M |
| 3300009523 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG | Environmental | Open in IMG/M |
| 3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
| 3300009700 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
| 3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017993 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300018482 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118 | Environmental | Open in IMG/M |
| 3300019887 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2 | Environmental | Open in IMG/M |
| 3300021088 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025588 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025633 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025703 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes) | Environmental | Open in IMG/M |
| 3300026446 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B | Environmental | Open in IMG/M |
| 3300026498 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A | Environmental | Open in IMG/M |
| 3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
| 3300027767 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028773 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2 | Environmental | Open in IMG/M |
| 3300028780 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300028808 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030509 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2 | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030624 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR005SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031764 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031779 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031792 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 | Environmental | Open in IMG/M |
| 3300031794 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23 | Environmental | Open in IMG/M |
| 3300031799 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032010 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 | Environmental | Open in IMG/M |
| 3300032039 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21 | Environmental | Open in IMG/M |
| 3300032042 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 | Environmental | Open in IMG/M |
| 3300032043 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032063 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17 | Environmental | Open in IMG/M |
| 3300032064 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20188J14859_10188162 | 3300001418 | Arctic Peat Soil | VSDAETTVTAAEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRESRQRL* |
| JGI25617J43924_103295211 | 3300002914 | Grasslands Soil | VSSAEATVTATKAAESVDGGEAVGIPSLQEAVGGLATALSQGTTVAGEAGRL |
| Ga0062389_1006488993 | 3300004092 | Bog Forest Soil | VTSAEVRLSAAEAAESVDGGEAVGIPSLEAVRGMAAALSQGTTVAREASRP |
| Ga0066677_101934491 | 3300005171 | Soil | VSSADATMTATKAAESVDGGEAVGIPSFQEAAGGLATALSQGTTVAREAAWLGLELTRIAWGLSDVA |
| Ga0066689_107730121 | 3300005447 | Soil | VTRTETRLTAAEAAESVDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRI |
| Ga0070706_1017327071 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | VTSAKTRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEA |
| Ga0068855_1023030082 | 3300005563 | Corn Rhizosphere | MTDGTAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIARGRSDVAPARGDR |
| Ga0066903_1058423701 | 3300005764 | Tropical Forest Soil | MTSANARMTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLSAELTRIAWGLSD |
| Ga0066787_100455422 | 3300005950 | Soil | VSDAKTTVTDSEAAESADGGEAVGLPSLKEAVGGLAAALGQAQTVAREISGLGLEFTRIARGNSSVAP |
| Ga0079221_113085401 | 3300006804 | Agricultural Soil | VSSSDAAMMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVELTRIAWGL |
| Ga0099830_104574002 | 3300009088 | Vadose Zone Soil | VTRAKTRLTAAEAAESIDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRIALGRSDVAPT |
| Ga0099827_120178481 | 3300009090 | Vadose Zone Soil | MTDGTAESVGGGEAVAMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIACG |
| Ga0099792_106301602 | 3300009143 | Vadose Zone Soil | VSSAEATVTAAGAAESVDGGEAVGIPSLQEAVGGLAAALSQGQTVAREVGLLGLELTRIAWGLS |
| Ga0105243_130253951 | 3300009148 | Miscanthus Rhizosphere | MTDGTAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIARGR |
| Ga0116214_11842571 | 3300009520 | Peatlands Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVNGMAAALRLGTTVAQEASQLGVELTRIAWGLS |
| Ga0116218_10798271 | 3300009522 | Peatlands Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVNGMAAALRQGTNVAQEASQLG |
| Ga0116221_13348202 | 3300009523 | Peatlands Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVNGMAAALRQGTTVAQEASQLGVELTRIAWSLSDVA |
| Ga0116215_11813811 | 3300009672 | Peatlands Soil | MTATKAAESVDGGEAVGIPSLQEAAGGLATALSQGTTVAREAGRLGLELTRIAWGLSDV |
| Ga0116217_102829601 | 3300009700 | Peatlands Soil | MTATKAAESVDGGEAVGIPSLEAVRGMAAALSQGTTVAREASRPSSACWELR |
| Ga0126374_112533663 | 3300009792 | Tropical Forest Soil | VTSEETRLTAAEAAESVDGGEAVGIPSLWDAVSGLAAALRQVTTVAQEASRLGLELTRIAWGLSDVA |
| Ga0126381_1011115641 | 3300010376 | Tropical Forest Soil | VTSAETRLTAAEAAEPVDGGEAVGIWDAVSGMAAALRQGTTVAHEASRLGVELTRIAWGLSDVAPAKGDR |
| Ga0150983_146709712 | 3300011120 | Forest Soil | VSDAETTETDSEAAESADGGEAVGIPSLKEAVGGLAAALGQAHTVAREVS |
| Ga0137393_107617501 | 3300011271 | Vadose Zone Soil | VTRAETRLTAAEAAESVDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEASRLGVELTRIA |
| Ga0137361_111674922 | 3300012362 | Vadose Zone Soil | VTRAETRLTAAEAAESIDGGEAVGIPSLWDAVSGMAAALRQGTTVAQEAS |
| Ga0137398_102951852 | 3300012683 | Vadose Zone Soil | VTSANDTLTATAAESVDGGEAVGIPSLQDAVGGLAAALSQGTTVAREAS |
| Ga0181531_103625262 | 3300014169 | Bog | VSSAEATATATKAAESVDGSEAVGMPSLEGAVGGLAAALSQWQTVTCEVGRLGLE |
| Ga0182024_112694071 | 3300014501 | Permafrost | MTDGTGSDGTAESVGGGEAVGMPSLRQAAGGLAAALSQGTTVAREASRLGAELTRIAR |
| Ga0182035_115097502 | 3300016341 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEAS |
| Ga0182032_119374431 | 3300016357 | Soil | MTSANARLTTPETTESVNGGEAVEIPSLRDAVNGLAAALTQGTAVAREASRLGAELTRIAWGLSDVAPAK |
| Ga0182039_116385361 | 3300016422 | Soil | VASAETRLTAAEAAESADGGEAVGIPSLRDAVGGMAAALS |
| Ga0182038_120867751 | 3300016445 | Soil | MTSADARLTAAEAAESADSGEAVGIPSLQETISGLAAALSQGTTVARETTRLGLELT |
| Ga0187823_100564582 | 3300017993 | Freshwater Sediment | VTSAETTLTAAEAAESVDGGEAVGIPSLGDAVSGMAAALRQGTTVAQEAGRLGVEL |
| Ga0066662_104376982 | 3300018468 | Grasslands Soil | VSSADATMTATKAAESVDGGEAVGIPSFQEAAGGLATALSQGTTVAREAAWLGLELTRIA |
| Ga0066669_112560711 | 3300018482 | Grasslands Soil | VSSADATMTATKAAESVDGGEAVGIPSFQEAAGGLATTLSQGTTVAREAAWLGL |
| Ga0193729_11095681 | 3300019887 | Soil | MTDGTAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREAGRLGAELTRIAWGRSDVAPARGDRRL |
| Ga0210404_105539291 | 3300021088 | Soil | VTSAKTRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEASRLGVELTRIAWGLSD |
| Ga0210406_103400122 | 3300021168 | Soil | VSSSDATTTDGTAESVGGGEAVGIPSLTGAVGGLAAALSQGTTVAREATRLGLEL |
| Ga0210405_109451702 | 3300021171 | Soil | MTDGTAESVGGGEAVGMPSVRQAASGLAAALSQGTTVAREAGRLGAELTRIAWGRS |
| Ga0210408_109074512 | 3300021178 | Soil | MLTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVELTRIAW |
| Ga0210388_101544691 | 3300021181 | Soil | VSDAETTVTDTEAAESADGGEAVGIPSLKEAIGGLAAALGQAQTVVRE |
| Ga0210384_103744311 | 3300021432 | Soil | MMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVELTRIAWG |
| Ga0210390_110453932 | 3300021474 | Soil | VSSLDATMMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGVE |
| Ga0210410_109386742 | 3300021479 | Soil | VSSSDATTTDGTAESVGGGEAVGIPSLTGAVGGLAAALSQGTTVAREATRLGLELPVS |
| Ga0210409_105602211 | 3300021559 | Soil | VSSSDATMMTAGAAESVDGGESVGIPSLTGAVGGLAAALSQGTTVAQEVTRLGV |
| Ga0224712_106545391 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSSDATTTDGTAESVGGGEAVGIPSLTGAVGGLAAALSQGTTVAREATRLGLELTRIAWGRSDVAPAK |
| Ga0208586_10031394 | 3300025588 | Arctic Peat Soil | VSDAETTVTAAEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRESRQRL |
| Ga0208480_10194132 | 3300025633 | Arctic Peat Soil | VSDAETTVTATEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRESRQRL |
| Ga0208357_10077831 | 3300025703 | Arctic Peat Soil | VSDAETTVTAAEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTLAREIGGLGLEFTCACRES |
| Ga0257178_10526882 | 3300026446 | Soil | VTSAETRLTAAEAAESVNGGEAVGIPSLWDAVSGMAAALRQGTTVAQE |
| Ga0257156_10747971 | 3300026498 | Soil | VTRAETRLTAAEAAESIDGGEAVGIPSLWDAVSGMAAA |
| Ga0209648_107254981 | 3300026551 | Grasslands Soil | VTSAETRLTAAEAAESVDGGEAFGIPSLWDAASGMAAALRQGTTVAQEASRLGVELTRIA |
| Ga0209655_100827631 | 3300027767 | Bog Forest Soil | VTSAKTRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEASRLGVE |
| Ga0209624_108032601 | 3300027895 | Forest Soil | VSDAETTETDSDAAESADGGEAVGIPSLRDAVGGLAAALGQ |
| Ga0209526_105474982 | 3300028047 | Forest Soil | VSSSDATMTTAGAAESVGGGEAVGMPSLRQAVGGLAAALSQGTTVAREATRLGLELTRIAWGLS |
| Ga0302234_101030082 | 3300028773 | Palsa | VSDAETTVTDTEAAESADGGEAVGIPSLREAVGGLAAALSQAQTVAREIGG |
| Ga0302225_101577471 | 3300028780 | Palsa | VSDAETTVTDSEAAESADGGEAVGIPSLKEAVGGLAAALSQAQTVAREIGGLGAEFTRIARGHSS |
| Ga0302228_104369722 | 3300028808 | Palsa | VSDAETTVTDTEAAESADGGEAVGIPSLKEAIGGLAAALGQAQTVAREVSGLGVEFTRIARGNSSVAPAK |
| Ga0311340_113079482 | 3300029943 | Palsa | VSSSDATLTDEAAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREASRLGVE |
| Ga0311370_100723704 | 3300030503 | Palsa | VSDAETMGTDSEAAESAGGGEAVGIPSLKEAVGGLAAALSQAHTVAREIGGLGLEFTRIARG |
| Ga0302183_100174623 | 3300030509 | Palsa | MGGFTDPEEWRVSSSDATMTDGAAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREASWLGVELTSIACGV |
| Ga0311354_115426001 | 3300030618 | Palsa | VSGSDATMTDGAAESVGGGEAVGMPSLRQAASGLAAALSQGTTVAREASRLGAELTRIARGRSDVAP |
| Ga0210251_102368101 | 3300030624 | Soil | VSDAETTVTDTEAAESADGGEAVGIPSLKEAVGGLAAALSQTQTVAREIGGLGVE |
| Ga0318516_105691882 | 3300031543 | Soil | VTSAETRLTAAEAAESVDGGEAVGIPSLGGAVSGMAAALRQGTTVAQEAGRLGVELTRIAWGLSDVAPTK |
| Ga0318534_108728191 | 3300031544 | Soil | MTSADARLTAAEATESVNGGEAVGIPSLHDAVSGMAAVLTQGT |
| Ga0318541_106733302 | 3300031545 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWACPTWLRPRVTGVSPIRHGRRTRYSG |
| Ga0318538_100413791 | 3300031546 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIAWGLSDVAPARG |
| Ga0318528_101352831 | 3300031561 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGIATALRQGTTLAREASRLGVE |
| Ga0318573_102275232 | 3300031564 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEA |
| Ga0318573_104211832 | 3300031564 | Soil | VTSAETTLTAAEAAESVDGGEAVGIPSLWDAVSGMAAAGERSR |
| Ga0318555_101429202 | 3300031640 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRIA |
| Ga0318555_103331062 | 3300031640 | Soil | VTSSDATTMTAGAAESVDGGEAVGIPSLTGAVGGLAAALSQGTTVAQEAARLGVE |
| Ga0318572_101722081 | 3300031681 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWAC |
| Ga0318493_102911742 | 3300031723 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELT |
| Ga0318493_108974381 | 3300031723 | Soil | VTSAETTLTAAQAAESVDGGEAVGIPSLWDAVSGLAAALRQGTTVAQEASRLGVELTR |
| Ga0306918_104991842 | 3300031744 | Soil | MTSANARLTTAETMESVNGGEAVGIPSLRGAVNGLAAALTQGTAVAREASRLGAELTRIAWGLSDVAP |
| Ga0318502_108859052 | 3300031747 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVEL |
| Ga0318492_107656072 | 3300031748 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTR |
| Ga0318535_102164871 | 3300031764 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAPA |
| Ga0318521_100364932 | 3300031770 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIASDK |
| Ga0318566_101563912 | 3300031779 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRI |
| Ga0318547_104088592 | 3300031781 | Soil | MTSANARLTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLGAEFTRIAWGLSDL |
| Ga0318529_105127791 | 3300031792 | Soil | VASAETGLTVAEAAESAAGGEAVGIPSLRDAVGGMAAALSQGT |
| Ga0318503_102840002 | 3300031794 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIAWGLSD |
| Ga0318565_100013864 | 3300031799 | Soil | MTSTDAKLTAGEALESVNGGEAVGMPSLRDAVSGLAAALSQGTTVAREASWLGVELTRIAWGLSDVAPARATGVSPIRRGCRTRYSG |
| Ga0318568_103388932 | 3300031819 | Soil | MTSANARLTTSETTESVNGGEAAGIPSLRDAVNGLAAALTQGTAVAREASRLGAELTRIAWGLSDVAP |
| Ga0318568_106147332 | 3300031819 | Soil | VTSAETRLTAAEAAESVDGGEAVGIPSLGGAVSGMAAALRQGTT |
| Ga0310917_103258441 | 3300031833 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAHEASRLGVELTRIAWGLSDVA |
| Ga0310917_112081632 | 3300031833 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAP |
| Ga0318551_101632041 | 3300031896 | Soil | MTSADARLTAAEAAESADSGEAVGIPSLQETISGLAAALG |
| Ga0306923_125641472 | 3300031910 | Soil | VSSTDATMTAAKAAESVDGGEAVAIPSLHQAASGLGKALSQGTAVAQEATRLGLELTRIAWGLSDVA |
| Ga0306921_121080172 | 3300031912 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWACPTWLRPRVTGV |
| Ga0306926_107683111 | 3300031954 | Soil | VTSSDATTMTAGAAESVDGGEAVGIPSLTGAVGGLAAALSQGTTVAQEAARLGVELTRIA |
| Ga0306926_120546872 | 3300031954 | Soil | VNNSDATMTRAESVGGGEAVGIPSLRDAVSGLAAALTQGTTVAREASRLGGELTRIAWGLSD |
| Ga0306926_130346251 | 3300031954 | Soil | VSSSDATMTTDGAAESVGGGEAVGIPSLPQAAKGLAAAFSQGTAVAGEAGRLGVELTRIARGRSD |
| Ga0306922_109881621 | 3300032001 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGVELTRIAWGLSDVA |
| Ga0306922_111905851 | 3300032001 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAPAKG |
| Ga0318569_100961952 | 3300032010 | Soil | VTSAETSLKAAEAAESVDGGEAVGIPSLWDAISGMATALRQGTTVAQEASRLGVELTRIAWGLSDVAPPK |
| Ga0318559_106010871 | 3300032039 | Soil | VTTAQTRLTAAEAAESVDGGEAIGIPSLRAAVSGMAAALRQGTTVAQEASRLGVELTRIAWGLSDVAPAK |
| Ga0318545_100091463 | 3300032042 | Soil | VTIAESRLTAAEAAEPVDGGKTVGIPSLWNPVSGMSAALRQGTTVAQEASRLGVELTRIAWGLSDVAPAK |
| Ga0318545_101884661 | 3300032042 | Soil | MTSANARLTTAETMESVNGGEAVGIPSLRGAVNGLAAALTQGTAVAREASRLGAELTRIAWGLS |
| Ga0318556_101903022 | 3300032043 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQEASRLGV |
| Ga0318533_107567191 | 3300032059 | Soil | VTTAQTRLTAAEAAESVDGGEAIGIPSLRAAVSGMAAALRQGTTVAQEA |
| Ga0318505_103261101 | 3300032060 | Soil | MTSADARLTAAEATESVNGGEAVGIPSLHDAVSGMAAVLTQGTTVAREA |
| Ga0318504_103610461 | 3300032063 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAQ |
| Ga0318510_102749661 | 3300032064 | Soil | MTSANARMTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLGAEFTRIAWGLSDLAPAKG |
| Ga0318514_101972101 | 3300032066 | Soil | VTSAETSLPAAEAAESVDGGEAVGIPSLWDAVSGMATALRQGTTVAH |
| Ga0306924_116875772 | 3300032076 | Soil | MTSANARLTTPETTESVNGGEAVGIPSLRDAVNGLAAALTQGTAVAREASRLGAEFTRIAWGLS |
| Ga0307471_1043133881 | 3300032180 | Hardwood Forest Soil | VTSTETRLTAAEAAESVDGGEAVGIPSLWDAASGMAAALRQGTTVAQEASRLGVELTRIA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |