Metagenome / Metatranscriptome Family F091040

Basic Information
Family ID	F091040
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	56 residues
Representative Sequence	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR
Number of Associated Samples	81
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.778 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.91% β-sheet: 0.00% Coil/Unstructured: 72.09%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13531	SBP_bac_11	7.41
PF00144	Beta-lactamase	6.48
PF13560	HTH_31	4.63
PF07730	HisKA_3	1.85
PF00069	Pkinase	1.85
PF13631	Cytochrom_B_N_2	0.93
PF09365	DUF2461	0.93
PF01168	Ala_racemase_N	0.93
PF00353	HemolysinCabind	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.41
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	6.48
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	6.48
COG2367	Beta-lactamase class A	Defense mechanisms [V]	6.48
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.85
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.85
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.85
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.85

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.89%
Host-Associated	Host-Associated	36.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.89%
Plants	Host-Associated → Plants	36.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.37%
Peat	Environmental → Terrestrial → Peat	15.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.81%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.26%
Loam	Environmental → Terrestrial → Soil → Loam	3.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	15.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.00%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	15.74%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	14.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300001404	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012	Environmental	Open in IMG/M
3300001427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012	Environmental	Open in IMG/M
3300001428	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012	Environmental	Open in IMG/M
3300001429	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012	Environmental	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025443	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025461	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025475	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025479	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025548	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028764	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_4	Environmental	Open in IMG/M
3300028855	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_4	Environmental	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034652	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_01810430	2140918007	Soil	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDPPTGPAK
JGI20181J14860_10003265	3300001404	Arctic Peat Soil	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDPPAGPAK*
JGI20200J14955_10004552	3300001427	Arctic Peat Soil	MEMLVVLAPFVVLAILGPVPAADSRVPGGWTPTEPGGKIWPDSPRVPDRPAETLT*
JGI20201J14949_10105392	3300001428	Arctic Peat Soil	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDLPAGPAK*
JGI20202J14951_10001605	3300001429	Arctic Peat Soil	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDXPAGPAK*
JGI24744J21845_100645701	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPQRKPD
JGI24140J50213_100313842	3300003369	Arctic Peat Soil	VSENDLFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPKTPDPPTGPAK*
Ga0070670_1004146582	3300005331	Switchgrass Rhizosphere	MEMLVVLGLFVVLAVLGPVIGADSRVPGGWRPTEPGGKIWPDPQREPDRPSKTPPRQSLSDHR*
Ga0070670_1011423511	3300005331	Switchgrass Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR*
Ga0070682_1000550072	3300005337	Corn Rhizosphere	MEMLVVLALFVVLAVLGPVIGADSRVPGGWRPTEPGGKIWPDPQREPDRPSKTPPRQSLSDHR*
Ga0070682_1004007282	3300005337	Corn Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPQRKPDRPSKTLPRHSLSEHR*
Ga0070688_1010118052	3300005365	Switchgrass Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDRESRTVVTAPLS
Ga0070678_1009504092	3300005456	Miscanthus Rhizosphere	MELLVVITLFTLLAILGPLIGADSRVPGGWIPTEPGGKIWPDPPRQPD
Ga0070678_1013911081	3300005456	Miscanthus Rhizosphere	MELLVVAALFTLLGILGRWIGVDSRAPGGWTPTEPGGKIWPDPPRPPDRETRTVLQHR*
Ga0068867_1015692461	3300005459	Miscanthus Rhizosphere	MELLVVLALFTMLAVLGPRVGADSRVPGGWTATDPDAKIWPDRTVQPDPPAEPR*
Ga0068867_1017554482	3300005459	Miscanthus Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPQRKP
Ga0068853_1018318492	3300005539	Corn Rhizosphere	MELFVVITLFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR*
Ga0070672_1019389321	3300005543	Miscanthus Rhizosphere	MELLVIITLFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR*
Ga0068852_1016889952	3300005616	Corn Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGEIWPDPQRKPDRQSKTLPRHSLSEHR*
Ga0070717_106089781	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MELLVVAALFTLLGILGRLIGVDSRVPGGWTPTEPGGKIWPDPPRTPDRGTPTRVAAPMI
Ga0097621_1005139012	3300006237	Miscanthus Rhizosphere	MELFVVLALFAMLAVLGPWVGVDSRVPGGWTATDPEAKIWPDRAVRPDPPAQPR*
Ga0075521_100105663	3300006642	Arctic Peat Soil	MEMLVVLGLFVVLAILGPVIGADSRVPGGWTPTEPGGKLWSDPQRKPDQPAEAPTRQRLSGRR*
Ga0075521_100447841	3300006642	Arctic Peat Soil	MELLIVLALFTALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPG*
Ga0075521_106598221	3300006642	Arctic Peat Soil	MGMELLVVLALFLALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPG*
Ga0105245_109555031	3300009098	Miscanthus Rhizosphere	MELLVVAALCTLLAILGPWIGADSRVPGGWSPTEPGEKIWPDPARWPDREARTTLQH*
Ga0105243_126812251	3300009148	Miscanthus Rhizosphere	RQPNRRGGDGKMELLVVLGLFVVLAILGPVIGADSRVPGGWAPTEPGGKIWPDPQREPDRPSKTPPRQSLSDHR*
Ga0105242_125092221	3300009176	Miscanthus Rhizosphere	MELFVVITLFTLLAILGPLIGAESRVPGGWTPTEPGGKIWPDPPRTPDRESRTVVTAPLS
Ga0134123_132701802	3300010403	Terrestrial Soil	VVAALFTLLAVLGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDRESRTVVTAPLS*
Ga0164300_109249941	3300012951	Soil	MELLVVLGLFVVLAILGPVIGADSRVTRGWAPTEPCGKIWPDPQRKPDRPSKTLPRHSLSEHR*
Ga0164298_100097824	3300012955	Soil	MEMLVVLGLFVVLAVLGPVIGADSRVPGGWRPTEPGGKIWPDPQREPDRPSKTPPRHSLSDHR*
Ga0164298_101714092	3300012955	Soil	MHMLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR*
Ga0164303_108196061	3300012957	Soil	MELFVVLALFAMLAVLGPWVGVDSRVPGGWTATDPEAKIWPDRAVRPDPP
Ga0164303_108660762	3300012957	Soil	MHMLVVAALFTLLAILGPLIGSDSRLQGGWTPTEPGGKVWPDPPRTPDRG
Ga0164299_113240921	3300012958	Soil	MELLVVAALFTLLAVLGPLIGADSRVPGGWTHTEPGGKIWPDPPRTPAREARTALQHR*
Ga0164301_100782072	3300012960	Soil	MHMLVVAALFTLLAILGPLIGTDSRVTGGWTPTEPGGKIWPDPPRTPDREARTALQHR*
Ga0164302_106009751	3300012961	Soil	MELLVVAALCTLLAILGPWIGADSRVPGGWTPTEPGEKIWPDPARSPDREARITLQHR*
Ga0164302_110196192	3300012961	Soil	MELLAVLALFMMLAVLGPWVGVDSRVPGGWTATDPEAKIWPDRAVRPDPPAQPR*
Ga0164302_112668641	3300012961	Soil	MELLVVAALFPLLGILGRLIRVDSRVPGGATPTEPGGKIWPDPPRTPD
Ga0164309_114379472	3300012984	Soil	MELLVVAALVTLLAVLGPVIGADSRVPGGWTPTEPGGKIWPDPPRTPDRESRTVVTAPLS
Ga0164308_101235002	3300012985	Soil	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRMPDREARTALQHR*
Ga0164304_101699973	3300012986	Soil	MEMLVVLALFVVLAVLTPVIGADSRVPGGWTPTEPGGKIWPDPQREPDRPSKTPPRQS
Ga0164307_103208602	3300012987	Soil	MELLAVLALFMMLAVLGPRVGVDSRVPGGWTATDPEAKIWPDRAVRPDPPAQPR*
Ga0164307_106333051	3300012987	Soil	MELLVVAALGTLLAILGPWIAADSRVPGGWTPTEPGEKIWPDPARSPDREARITLQHR*
Ga0164307_113301171	3300012987	Soil	MELFVVLALFAMLAVLGPWVGVDSRVPGGWTATDPEAKIWPDRAVR
Ga0164307_113850992	3300012987	Soil	MHMLVVAALFTLLAILGPLIGTDSRVTGGWTPTEPGGKIWPDPPRRPDRESPPKVTAPSS
Ga0164306_101235272	3300012988	Soil	MELLVVLALFMMLAVLGPRVGVDSRVPGGWTATDPDAKIWPDRAVRPDPPAQPR*
Ga0164306_101447661	3300012988	Soil	MELLVVAALCTLLAILGPWIGADSRVPGGWTPTEPGEKIWPDRARSPDREARITLQH*
Ga0164306_103125212	3300012988	Soil	MELLLMAALFTLLAVLAPRFGADSRVSGGWTPTEPGGKIWPHLPRPPDREARTPLRHG*
Ga0164305_102214462	3300012989	Soil	MELLVVAALFTLLGILGRLIGVDSRVPGGWTPTEPGGKIWPDPPRTPDRGTP
Ga0164305_117789372	3300012989	Soil	MELLVVIALVTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDRGSRTVVTAPLS
Ga0164305_122515591	3300012989	Soil	MELLVVITLFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDRESRTVVTAPLS
Ga0157374_103965381	3300013296	Miscanthus Rhizosphere	MELLVVAALFTLLAILGPLIGAESRVPGGWTPTEPGGKIWPDPPRQPDREARTALHHN*
Ga0163162_128544211	3300013306	Switchgrass Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREAGTVVTASLS
Ga0157375_125417861	3300013308	Miscanthus Rhizosphere	MEMLVVLALFVVLAVLGPVVGADSRVPGGWRPTEPGGKIWPDPQREPDRPSKTPPRQSLSDHR*
Ga0157377_116936951	3300014745	Miscanthus Rhizosphere	MELFVVITLFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRPPDRETRTVLQHR*
Ga0157379_115018331	3300014968	Switchgrass Rhizosphere	MELLVVAALFTLLAVLGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDR
Ga0157379_118111641	3300014968	Switchgrass Rhizosphere	MELFVVLALFAMLAVLGPWVGVDSRVPGGWTATDPEAKIWPDRAVRP
Ga0157376_112859211	3300014969	Miscanthus Rhizosphere	LLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRQPDREARTVVTAPLS*
Ga0132256_1036527061	3300015372	Arabidopsis Rhizosphere	MELLVILALFIALAILGPWLGVDSRVPGGWTPTDPDDKIWPERADPPDPLGRQD*
Ga0163161_102210971	3300017792	Switchgrass Rhizosphere	MELLVIITLFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDRGTPTAVQHR
Ga0163161_120171361	3300017792	Switchgrass Rhizosphere	LCRLRGDHHMGILFVLTFFVVLAILGPLIGADSRVPGGWTPTESGDKIWPDPHRTPD
Ga0190270_112184401	3300018469	Soil	MALLVALAFFTLLAILGPWVGVDSRVPGGWTPTDPRGKIWTDRPAQPDPPAKP
Ga0190271_100031697	3300018481	Soil	MELFVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPQRKPDRPSKTLPRHSLSEHR
Ga0190267_112826291	3300019767	Soil	MELLVVLALFLMLAVLGPWVGVDSRVPGGWTATDPDAKLWPDRAVRPDPPAEPR
Ga0208077_10203812	3300025427	Arctic Peat Soil	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDPPAGPAK
Ga0208081_10218363	3300025443	Arctic Peat Soil	MEMLVVLAPFVVLAILGPVPAADSRVPGGWTPTEPGGKIWPDSPRVPDRPAETLT
Ga0208851_10376062	3300025461	Arctic Peat Soil	MALLVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDPRTGPAEK
Ga0208478_10865941	3300025475	Arctic Peat Soil	MELLIVLALFTALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPG
Ga0208588_10002509	3300025479	Arctic Peat Soil	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDLPAGPAK
Ga0208716_10265581	3300025548	Arctic Peat Soil	MLVVLAPFVVLAILGPVPAADSRVPGGWTPTEPGGKIWPDSPRVPDRPAETLT
Ga0209584_100124753	3300025878	Arctic Peat Soil	MELLIVLTLFTALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPG
Ga0209584_102986501	3300025878	Arctic Peat Soil	MELLVVLALFLALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPG
Ga0207688_103999932	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPQRKPDRPSKTLPRHSLSEHR
Ga0207680_106632812	3300025903	Switchgrass Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDAPRTPDRESRTVVTAPLS
Ga0207687_108365031	3300025927	Miscanthus Rhizosphere	MEMLVVLGLFVVLAVLGPVIGADSRVPGGWRPTEPGGKIWPDPQREPDRPSKTPPRQSLSDHR
Ga0207687_109156651	3300025927	Miscanthus Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKVWPDPPRTPDRGTPTAVQHR
Ga0207686_111918262	3300025934	Miscanthus Rhizosphere	LFVVITLFTLLAILGPLIGAESRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR
Ga0207669_102173781	3300025937	Miscanthus Rhizosphere	MELLVIITLFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRQPDREARTVVTAPLS
Ga0207669_108928221	3300025937	Miscanthus Rhizosphere	MELLVVLALFTMLAVLGPRVGADSRVPGGWTATDPDAKIWPDRTVQPDPPAEPR
Ga0207704_103090422	3300025938	Miscanthus Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRQPDREARTVVTAPLS
Ga0207691_108394031	3300025940	Miscanthus Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPPRTPDREARTALQHR
Ga0207689_106728512	3300025942	Miscanthus Rhizosphere	MEMLVVLGLFVVLAVLGPVIGADSRVPGGWRPTEPSGKIWPDPQREPDRPSKTPPRQSLSDHR
Ga0207658_110504622	3300025986	Switchgrass Rhizosphere	MEMLVVLGLFVVLAVLGPVIGADSRVPGGWRPTEPGGKIWPDPPRQPDREARTALHHN
Ga0207648_117727261	3300026089	Miscanthus Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPDPQRK
Ga0207698_105357931	3300026142	Corn Rhizosphere	MELLVVLGLFVVLPILGPVIGADSRVTRGWAPTEPCGKIWPD
Ga0207698_108632932	3300026142	Corn Rhizosphere	EMELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR
Ga0268266_111244742	3300028379	Switchgrass Rhizosphere	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPQRKPDRPSKTLPRHSLSEHR
Ga0247820_100466712	3300028597	Soil	MELLVVAALFTLLAILGPLIGADSRVPGGWTPTEPGGKIWPDPPRTPDREARTALQHR
Ga0247820_106700632	3300028597	Soil	MQLLVVIALVTLLAILGPVIGTDSRVPGGWTPTEPGSKIWPNPPRTPDHAARTVLQHR
Ga0302169_100100101	3300028679	Fen	MALFFVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDPPAGPAK
Ga0302256_102277041	3300028741	Fen	MGMELLVVLALFLALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADSPDPPESPG
Ga0302260_10902992	3300028764	Fen	LFIVLAILGPWLGADSRAPGGWTPTDPDDKLWPDRPETPDPPAGPAK
Ga0302257_10758632	3300028855	Fen	MELLIVLALFTALAILGPWLGVDSRVPGGWTPTDPADKIWPDKTDTPDPPESPG
Ga0302259_10221562	3300028861	Fen	VLALFTALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPG
Ga0311332_100724943	3300029984	Fen	MELLIVLALFTALAILGPWLGVDGRVPGGWTPTDPADKIWPDKADTPDPPESPG
Ga0311332_117002372	3300029984	Fen	MELLVVLALFIALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPR
Ga0311336_105130812	3300029990	Fen	MELLVVLALFLALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADTPDPPESPR
Ga0311336_109357111	3300029990	Fen	LFLALAILGPWLGVDSRVPGGWTPTDPDDKIWPDKAATPDPPVARINRC
Ga0311350_110893042	3300030002	Fen	TRRCMRMELLVVLALFVALAVLGPWLGVDSRVPGGWTPTDPDDKIWPDKAATPDPPGRPD
Ga0302172_103192161	3300030003	Fen	MELLVVLALFIALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADSPDPPESPG
Ga0311333_101083923	3300030114	Fen	RMALLVVLALFIVLAILGPWLGADSRAPGGWTPTDPDDELWPDRPETPDPPT
Ga0311333_101325262	3300030114	Fen	MELLVVLALFLALAILGPWLGVDSRVPGGWTPTDPADKIWPDKADSPDPPESPG
Ga0311349_106987952	3300030294	Fen	MALLVVLALFIVLAILGPWLGADSRAPGGWTPTDPDDKLWPDRPETPDPPT
Ga0311366_117080462	3300030943	Fen	MALLVVLALFIVLAILGPWLGADSRAPGGWTPTDPDNKLWPDRPETPDPPT
Ga0302321_1035735701	3300031726	Fen	FLALAILGPWLGVDSRVPGGWTPTDPDDKIWPDKAATPDPPGRPD
Ga0302322_1016164852	3300031902	Fen	MALLVVLSLFIVLAILGPWLGADSRAPGGWTPTDPDDKLWPDRPETPDPPT
Ga0370545_059516_296_463	3300034643	Soil	MALLVVLALFTLLAILGLWLGVDSRVPGGWTPTEPGDKLWPDRPETPDPPTRPAE
Ga0316598_060471_765_920	3300034652	Untreated Peat Soil	MALLVVLALFIVLAILGLWLGADSRVPGGWTPTDPDDKLWPDRPEAPDPPT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091040

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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