Metagenome Family F091046

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091046
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	42 residues
Representative Sequence	MRRFLCRVVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR
Number of Associated Samples	88
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.74 %
% of genes near scaffold ends (potentially truncated)	21.30 %
% of genes from short scaffolds (< 2000 bps)	78.70 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.296 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere (5.556 % of family members)
Environment Ontology (ENVO)	Unclassified (23.148 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.59% β-sheet: 8.70% Coil/Unstructured: 79.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00107	ADH_zinc_N	13.89
PF01925	TauE	9.26
PF00582	Usp	5.56
PF00290	Trp_syntA	5.56
PF16884	ADH_N_2	3.70
PF02622	DUF179	3.70
PF01268	FTHFS	2.78
PF04185	Phosphoesterase	2.78
PF13602	ADH_zinc_N_2	1.85
PF01243	Putative_PNPOx	1.85
PF02777	Sod_Fe_C	1.85
PF04961	FTCD_C	1.85
PF12773	DZR	1.85
PF07311	Dodecin	1.85
PF00245	Alk_phosphatase	1.85
PF05425	CopD	1.85
PF02729	OTCace_N	0.93
PF00140	Sigma70_r1_2	0.93
PF12802	MarR_2	0.93
PF04542	Sigma70_r2	0.93
PF07992	Pyr_redox_2	0.93
PF02073	Peptidase_M29	0.93
PF00672	HAMP	0.93
PF01381	HTH_3	0.93
PF02811	PHP	0.93
PF13683	rve_3	0.93
PF12903	DUF3830	0.93
PF01047	MarR	0.93
PF04545	Sigma70_r4	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	9.26
COG0159	Tryptophan synthase alpha chain	Amino acid transport and metabolism [E]	5.56
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	3.70
COG2759	Formyltetrahydrofolate synthetase	Nucleotide transport and metabolism [F]	2.78
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	2.78
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.85
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	1.85
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	1.85
COG1785	Alkaline phosphatase	Inorganic ion transport and metabolism [P]	1.85
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	1.85
COG3404	Formiminotetrahydrofolate cyclodeaminase	Amino acid transport and metabolism [E]	1.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.93
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.30 %
Unclassified	root	N/A	28.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.30 %
Unclassified	root	N/A	28.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.30 %
Unclassified	root	N/A	28.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.74 %
Unclassified	root	N/A	28.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.11 %
Unclassified	root	N/A	28.70 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	4.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.89 %
Candidatus Dormibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter	4.63 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	1.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.11 %
unclassified Candidatus Dormibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter	4.63 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	1.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.11 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	4.63 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	1.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.11 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	4.63 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	1.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.11 %
Candidatus Dormibacter sp. RRmetagenome_bin12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	4.63 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001380\|JGI1356J14229_10007227	All Organisms → cellular organisms → Bacteria	7884	Open in IMG/M
3300003267\|soilL1_10035606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2611	Open in IMG/M
3300003267\|soilL1_10074844	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300003324\|soilH2_10169021	Not Available	2084	Open in IMG/M
3300004114\|Ga0062593_100182872	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300004156\|Ga0062589_102202003	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300004157\|Ga0062590_100237082	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300004157\|Ga0062590_101634422	Not Available	653	Open in IMG/M
3300004479\|Ga0062595_100653401	Not Available	833	Open in IMG/M
3300004480\|Ga0062592_101152745	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005186\|Ga0066676_10994637	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005187\|Ga0066675_10207186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1381	Open in IMG/M
3300005218\|Ga0068996_10168530	Not Available	549	Open in IMG/M
3300005332\|Ga0066388_108247398	Not Available	520	Open in IMG/M
3300005336\|Ga0070680_100119091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2203	Open in IMG/M
3300005337\|Ga0070682_101923757	Not Available	519	Open in IMG/M
3300005445\|Ga0070708_101862401	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005529\|Ga0070741_10054504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4772	Open in IMG/M
3300005529\|Ga0070741_10538654	Not Available	1051	Open in IMG/M
3300005555\|Ga0066692_10312005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300005598\|Ga0066706_11279564	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300005937\|Ga0081455_10088040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2525	Open in IMG/M
3300006865\|Ga0073934_10200688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1357	Open in IMG/M
3300006876\|Ga0079217_11743146	Not Available	503	Open in IMG/M
3300006903\|Ga0075426_11286918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	555	Open in IMG/M
3300006914\|Ga0075436_100791282	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300006914\|Ga0075436_100799882	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300009137\|Ga0066709_100119581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3287	Open in IMG/M
3300009137\|Ga0066709_104614898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300009162\|Ga0075423_10177650	All Organisms → cellular organisms → Bacteria	2235	Open in IMG/M
3300009617\|Ga0116123_1124725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	674	Open in IMG/M
3300009809\|Ga0105089_1035055	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300009837\|Ga0105058_1091395	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300009840\|Ga0126313_10856869	Not Available	741	Open in IMG/M
3300010304\|Ga0134088_10333864	Not Available	735	Open in IMG/M
3300010362\|Ga0126377_10349585	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300011270\|Ga0137391_10438686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1112	Open in IMG/M
3300012202\|Ga0137363_11429832	Not Available	582	Open in IMG/M
3300012211\|Ga0137377_10646509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300012363\|Ga0137390_10092364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2986	Open in IMG/M
3300012960\|Ga0164301_11751190	Not Available	521	Open in IMG/M
3300012971\|Ga0126369_10509273	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300012971\|Ga0126369_11496196	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300014269\|Ga0075302_1162973	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300014502\|Ga0182021_12657298	Not Available	602	Open in IMG/M
3300015245\|Ga0137409_11326246	Not Available	563	Open in IMG/M
3300015371\|Ga0132258_10254822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4292	Open in IMG/M
3300015371\|Ga0132258_10861452	All Organisms → cellular organisms → Bacteria	2287	Open in IMG/M
3300015371\|Ga0132258_11737108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1573	Open in IMG/M
3300015371\|Ga0132258_12722039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1233	Open in IMG/M
3300015372\|Ga0132256_101173513	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300015372\|Ga0132256_102261297	Not Available	648	Open in IMG/M
3300015374\|Ga0132255_100156617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3181	Open in IMG/M
3300015374\|Ga0132255_102749604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300018032\|Ga0187788_10120526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	965	Open in IMG/M
3300018032\|Ga0187788_10463323	Not Available	542	Open in IMG/M
3300018060\|Ga0187765_10184815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1196	Open in IMG/M
3300018060\|Ga0187765_10467407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	792	Open in IMG/M
3300018060\|Ga0187765_11007298	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300018064\|Ga0187773_10761026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	611	Open in IMG/M
3300018422\|Ga0190265_13841568	Not Available	501	Open in IMG/M
3300018433\|Ga0066667_10856593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	778	Open in IMG/M
3300018433\|Ga0066667_11595635	Not Available	581	Open in IMG/M
3300019356\|Ga0173481_10133294	Not Available	1003	Open in IMG/M
3300022883\|Ga0247786_1076853	Not Available	702	Open in IMG/M
3300024288\|Ga0179589_10371384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300025164\|Ga0209521_10251465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300025167\|Ga0209642_10149070	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300025174\|Ga0209324_10616063	Not Available	636	Open in IMG/M
3300025310\|Ga0209172_10140693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300025314\|Ga0209323_10070302	All Organisms → cellular organisms → Bacteria	2386	Open in IMG/M
3300025318\|Ga0209519_10759846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300025324\|Ga0209640_10586338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300025325\|Ga0209341_10458151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300025326\|Ga0209342_10438885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1099	Open in IMG/M
3300025326\|Ga0209342_10652057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	850	Open in IMG/M
3300025327\|Ga0209751_10500675	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300025919\|Ga0207657_10753505	Not Available	754	Open in IMG/M
3300025945\|Ga0207679_10921685	Not Available	799	Open in IMG/M
3300025985\|Ga0210117_1088848	Not Available	549	Open in IMG/M
3300026528\|Ga0209378_1281567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300027169\|Ga0209897_1073311	Not Available	509	Open in IMG/M
3300027819\|Ga0209514_10003809	All Organisms → cellular organisms → Bacteria	21026	Open in IMG/M
3300027819\|Ga0209514_10022183	All Organisms → cellular organisms → Bacteria	5559	Open in IMG/M
3300028556\|Ga0265337_1137073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	663	Open in IMG/M
3300028558\|Ga0265326_10242623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300028589\|Ga0247818_10523160	Not Available	810	Open in IMG/M
3300028589\|Ga0247818_11079153	Not Available	570	Open in IMG/M
3300028654\|Ga0265322_10185466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin12	595	Open in IMG/M
3300028666\|Ga0265336_10042849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1381	Open in IMG/M
3300028800\|Ga0265338_10054242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3577	Open in IMG/M
3300028800\|Ga0265338_10111928	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300028812\|Ga0247825_10091086	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300031170\|Ga0307498_10030618	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300031726\|Ga0302321_103130854	Not Available	539	Open in IMG/M
3300031799\|Ga0318565_10398117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300031995\|Ga0307409_102811265	Not Available	514	Open in IMG/M
3300032002\|Ga0307416_102588878	Not Available	605	Open in IMG/M
3300032075\|Ga0310890_11467783	Not Available	561	Open in IMG/M
3300032163\|Ga0315281_10021665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	8405	Open in IMG/M
3300032180\|Ga0307471_102452133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300032829\|Ga0335070_10008993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11730	Open in IMG/M
3300032829\|Ga0335070_10046127	All Organisms → cellular organisms → Bacteria → Proteobacteria	4828	Open in IMG/M
3300032892\|Ga0335081_10723232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1203	Open in IMG/M
3300032893\|Ga0335069_10022681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8643	Open in IMG/M
3300033158\|Ga0335077_11261247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	720	Open in IMG/M
3300033233\|Ga0334722_10111689	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300033551\|Ga0247830_10742316	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.70%
Host-Associated	Host-Associated	21.30%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.44%
Plants	Host-Associated → Plants	21.30%
Aquatic	Environmental → Aquatic	9.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.48%
Freshwater	Environmental → Aquatic → Freshwater	5.56%
Marine	Environmental → Aquatic → Marine	1.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.85%
Peat	Environmental → Terrestrial → Peat	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.04%
Loam	Environmental → Terrestrial → Soil → Loam	9.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.56%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.78%
Sand	Environmental → Terrestrial → Soil → Sand	2.78%
Lake	Environmental → Aquatic → Freshwater → Lake	1.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.85%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.11%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.33%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.63%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.56%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	5.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.78%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.78%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.85%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001380	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300027169	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027819	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028654	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG	Host-Associated	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1356J14229_1000722713	3300001380	Groundwater	MLHLSRSLVCRIVGHRLPRSKRPFFLTERFQRCERCGERVRAKYR*
soilL1_100356064	3300003267	Sugarcane Root And Bulk Soil	MRRVICRALGHKLPRRRRPFFLTERYQRCERCGERVRLEDR*
soilL1_100748443	3300003267	Sugarcane Root And Bulk Soil	VNILCRVFGHRLPRRRRPFFLTDHFQRCERCGERVRLKDR*
soilH2_101690212	3300003324	Sugarcane Root And Bulk Soil	MRRVICRALGHRLPRRRRPFFLTERYQRCERCGERVRLEDR*
Ga0062593_1001828723	3300004114	Soil	VNLRCRIFGHRLPRRKRPFFLTDRFQRCERCGERVALKGR*
Ga0062589_1022020032	3300004156	Soil	VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGARVPLKDRERP*
Ga0062590_1002370822	3300004157	Soil	VSLRCRIFGHRLPRRKRPFFLTDRFQRCERCGERVALKGR*
Ga0062590_1016344222	3300004157	Soil	VNWICRVFGHRLPRRRRPFFLTDLFQKCERCGERVRLKDR*
Ga0062595_1006534011	3300004479	Soil	MKRAVCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0062592_1011527453	3300004480	Soil	VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGARVPLKDRDRP*
Ga0066676_109946371	3300005186	Soil	VKLRCRLLGHKLPRRKRPFFLTDRFQRCERCGERVLLKDR*
Ga0066675_102071863	3300005187	Soil	MRRHLCRVLGHKLPRRRRPFFLTERFQRCERCGERVMLKGRE*
Ga0068996_101685302	3300005218	Natural And Restored Wetlands	PYPGYRVGSHMKRALCSVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0066388_1082473982	3300005332	Tropical Forest Soil	MRGTFCRVLGHRLPRRKRPFFLIERYQRCERCGARVRLKDR*
Ga0070680_1001190913	3300005336	Corn Rhizosphere	MRRLTCRVLGHKLPRRRRPFFLTERFQRCERCGKRIPLKGR*
Ga0070682_1019237572	3300005337	Corn Rhizosphere	MRRLTCRFLGHKLPRRRRPFFLTERFQRCERCGARVRLRGR*
Ga0070708_1018624012	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRAVCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLRGR*
Ga0070741_100545044	3300005529	Surface Soil	MRNVICRVLGHKLPRRKRPFFLIERYQRCERCGERVRLRDR*
Ga0070741_105386542	3300005529	Surface Soil	MRNLICRVLGHKLPRRKRPFFLIERYQRCERCGERVRLRDR*
Ga0066692_103120052	3300005555	Soil	MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVRGL*
Ga0066706_112795642	3300005598	Soil	VRRILCTVIGHRLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0081455_100880402	3300005937	Tabebuia Heterophylla Rhizosphere	VTLRCRVLGHRLPRRKRPFFLTDRFQRCERCGDRVLLKNR*
Ga0073934_102006883	3300006865	Hot Spring Sediment	VKLRCRLLGHRLPRRKRPFFLTERFQRCERCGRRIRLRDR*
Ga0079217_117431462	3300006876	Agricultural Soil	MLRCRLFGHRLPRRRRPFFLTERYQRCERCGKRVLLRGR*
Ga0075426_112869182	3300006903	Populus Rhizosphere	MRRAVCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0075436_1007912822	3300006914	Populus Rhizosphere	MRRTLCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0075436_1007998822	3300006914	Populus Rhizosphere	VCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLRGR*
Ga0066709_1001195815	3300009137	Grasslands Soil	MRRALCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0066709_1046148982	3300009137	Grasslands Soil	MRRILCSVVGHRLPRRKRPFFLIERYQRCERCGERVRLKDR*
Ga0075423_101776502	3300009162	Populus Rhizosphere	MKRALCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKDR*
Ga0116123_11247251	3300009617	Peatland	DDRLAAGRNGMARFICRIVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR*
Ga0105089_10350551	3300009809	Groundwater Sand	MCRLFGHRLPRRKRPFFVLEPPLQRCERCGKRALVKIRR*
Ga0105058_10913952	3300009837	Groundwater Sand	MNLLCRLLGHRLPRRKRPFFLTERFQRCERCGKRVRLKDR*
Ga0126313_108568693	3300009840	Serpentine Soil	LCRLVGHRLPRRKRPFFLLEPPLQRCERCGKRVLVRIGR*
Ga0134088_103338642	3300010304	Grasslands Soil	MRRALCRVIGHKLPRRKRPFFLIERYQRCQRCGERVRLKGR*
Ga0126377_103495852	3300010362	Tropical Forest Soil	VLGHRLPRRKRPFFLIERYQRCERCGARVRLKDR*
Ga0137391_104386861	3300011270	Vadose Zone Soil	AGMRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVRGL*
Ga0137363_114298322	3300012202	Vadose Zone Soil	MRRLTCRILGHKLPRRRRPFFLTERFQRCERCGKRVALKGR*
Ga0137377_106465093	3300012211	Vadose Zone Soil	MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKLRGQRW*
Ga0137390_100923643	3300012363	Vadose Zone Soil	MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVR
Ga0164301_117511902	3300012960	Soil	MRRLTCRFLGHKLPRRRRPFFLTERFQRCERCGKRIPLKGR*
Ga0126369_105092732	3300012971	Tropical Forest Soil	MRRILCSMVGHRLPRRKRPFFLIERYQRCERCGERVRLKGR*
Ga0126369_114961962	3300012971	Tropical Forest Soil	MRRILCSVVGHRLPRRKRPFFLIDRYQRCERCGERVRLKGR*
Ga0075302_11629732	3300014269	Natural And Restored Wetlands	MTLRCRVFGHKLLRRKRPFFLTERYQRCDRCGKRIRLKGR*
Ga0182021_126572982	3300014502	Fen	MKRVLCRVVGHRLPRRKRPFFLTDRYQRCERCGKRVRLKDR*
Ga0137409_113262462	3300015245	Vadose Zone Soil	MLCNVLGHKLPRRKRPFFLIERYQPCSRCGERVRLKGR*
Ga0132258_102548223	3300015371	Arabidopsis Rhizosphere	VNWMCRVLGHRLPRRRRPFFLTDLFQKCERCGERVRLKDR*
Ga0132258_108614524	3300015371	Arabidopsis Rhizosphere	MTLRCRLLGHKLPRRKRPFFLTDRFQRCERCGQRVLLKDR*
Ga0132258_117371082	3300015371	Arabidopsis Rhizosphere	VKRALCHVLGHRLPRRKRPFFLIERYQRCERCGERVRLKDR*
Ga0132258_127220392	3300015371	Arabidopsis Rhizosphere	MNWLCRVFGHRLPKRRRPFFLTDLFQKCERCGERVRLKDR*
Ga0132256_1011735132	3300015372	Arabidopsis Rhizosphere	RGSLCRVLGHRLPRRKRPFFLIESYQRCERCGARVRLKDR*
Ga0132256_1022612971	3300015372	Arabidopsis Rhizosphere	VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGERVPLKDRDRS*
Ga0132255_1001566174	3300015374	Arabidopsis Rhizosphere	VNWLCRVFGHRLPRRRRPFFLTDHFQKCERCGERVRLKDR*
Ga0132255_1027496041	3300015374	Arabidopsis Rhizosphere	AGRVRGSLCRVLGHRLPRRKRPFFLIERYQRCERCGARVRLKDR*
Ga0187788_101205262	3300018032	Tropical Peatland	MRRFLCRVVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR
Ga0187788_104633231	3300018032	Tropical Peatland	MRRRFLCRVVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR
Ga0187765_101848152	3300018060	Tropical Peatland	VKRLLCSVIGHKLPRRKRPFFLIERYQRCDRCGERVRLKGR
Ga0187765_104674072	3300018060	Tropical Peatland	VKRVLCNVIGHKLPRRKRPFFLIERYQRCDRCGERIRLKGR
Ga0187765_110072981	3300018060	Tropical Peatland	MRRILCNVVGHRLPRRKRPFFLIERYQRCERCGERVR
Ga0187773_107610261	3300018064	Tropical Peatland	AAVRRVLCRLVGHRLPRRHRPFFLTERYQRCERCGERVRLRGR
Ga0190265_138415682	3300018422	Soil	VVRCRIFGHRLPRRRRPFFLTERFQRCERCGRRIRLKGR
Ga0066667_108565932	3300018433	Grasslands Soil	VKLRCRLLGHKLPRRKRPFFLTDRFQRCERCGERVLLKDR
Ga0066667_115956352	3300018433	Grasslands Soil	MRRALCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR
Ga0173481_101332941	3300019356	Soil	VSLRCRIFGHRLPRRKRPFFLTDRFQRCERCGERVALKGR
Ga0247786_10768532	3300022883	Soil	VNWICRVFGHRLPRRRRPFFLTDLFQKCERCGERVRLKD
Ga0179589_103713842	3300024288	Vadose Zone Soil	MRRLTCRILGHKLPRRRRPFFLTERFQRCERCGKRVALKGR
Ga0209521_102514652	3300025164	Soil	MIRLSRALLCRVLGHRLPRSKRPFFLTERFQRCDRCGERVRAKYR
Ga0209642_101490703	3300025167	Soil	MVRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKYR
Ga0209324_106160631	3300025174	Soil	VAGYSPRMIRLSRALLCRVLGHRLPRSKRPFFLTERFQRCDRCGERVRAKYR
Ga0209172_101406933	3300025310	Hot Spring Sediment	VKLRCRLLGHRLPRRKRPFFLTERFQRCERCGKRIRLHDR
Ga0209323_100703023	3300025314	Soil	SPRMVRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCDRCGERVRAKYR
Ga0209519_107598461	3300025318	Soil	MIRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKYR
Ga0209640_105863382	3300025324	Soil	MIRLSRSLLCRVLGHRLPRSKRSFFLTERFQRCERCGERVRAKYR
Ga0209341_104581511	3300025325	Soil	VIRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKHR
Ga0209342_104388853	3300025326	Soil	MIRLSRSFLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKHR
Ga0209342_106520571	3300025326	Soil	RVLGHGLPRSKRPFFLTERFQRCERCGERVRAKHR
Ga0209751_105006751	3300025327	Soil	VSAAAGYSARMIRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKYR
Ga0207657_107535052	3300025919	Corn Rhizosphere	MNWLCRVFGHRLPKRRRPFFLTDLFQKCERCGERVRLKDR
Ga0207679_109216852	3300025945	Corn Rhizosphere	VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGARVPLKDRDRP
Ga0210117_10888482	3300025985	Natural And Restored Wetlands	PYPGYRVGSHMKRALCSVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR
Ga0209378_12815671	3300026528	Soil	MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVRGL
Ga0209897_10733111	3300027169	Groundwater Sand	MCRLFGHRLPRRKRPFFVLEPPLQRCERCGKRVLVKIRR
Ga0209514_1000380918	3300027819	Groundwater	MLHLSRSLVCRIVGHRLPRSKRPFFLTERFQRCERCGERVRAKYR
Ga0209514_100221831	3300027819	Groundwater	VAGYSPRMLRLSLSLVCRVFGHRLPRSKRPFFLTERFQRCERCGERVRAKYR
Ga0265337_11370732	3300028556	Rhizosphere	MPKLLCRVLGHRLPRRRRPFFLTERYQRCERCGERVRLRGR
Ga0265326_102426232	3300028558	Rhizosphere	MARFLCRILGHRLPRRRRPFFLTERYQRCERCGERVRLRGR
Ga0247818_105231602	3300028589	Soil	VKLRCRVLGHRLPRRKRPFFLTERFQRCERCGERIRLKDR
Ga0247818_110791531	3300028589	Soil	VNWLCRVLGHRLPRRRRPFFLTDLFQRCERCGERVRLKDR
Ga0265322_101854661	3300028654	Rhizosphere	GDDMRFLCRILGHRLPRRRRPFFLTERYQRCERCGERIRLRGR
Ga0265336_100428492	3300028666	Rhizosphere	MRFLCRILGHRLPRRRRPFFLTERYQRCERCGERIRLRGR
Ga0265338_100542425	3300028800	Rhizosphere	MPKLLCRVLGHRLPRRRRPFFLTERYQRCDRCGERVRLRGR
Ga0265338_101119284	3300028800	Rhizosphere	MARFLCRIFGHRLPRRRRPFFLTERYQRCERCGERVRLRDR
Ga0247825_100910865	3300028812	Soil	MKLRCRLLGHRLPRRKRPFFLTELFQRCERCGERIRLKDR
Ga0307498_100306182	3300031170	Soil	VKLRCRILGHRLPRRRRPFFLTERYQRCERCGKRVRLRDR
Ga0302321_1031308542	3300031726	Fen	MKRVLCRVVGHRLPRRKRPFFLTDRYQRCERCGKRVRLKDR
Ga0318565_103981171	3300031799	Soil	SSVLCRVVGHRLPRRKRPFFITEHFQRCERCGERVLIRDR
Ga0307409_1028112651	3300031995	Rhizosphere	VNWICRVVGHRLPRRRRPFFLTDLFQRCERCGERVR
Ga0307416_1025888781	3300032002	Rhizosphere	VNWICRVVGHRLPRRRRPFFLTDLFQRCERCGERVRLKDR
Ga0310890_114677832	3300032075	Soil	VNWLCRVLGHRLPRRRRPFFLTDPFQKCERCGERVRLKD
Ga0315281_100216659	3300032163	Sediment	MALLRRSLLCRVFGHRLPRRKRPFFLTERFQRCERCGERVTAKYL
Ga0307471_1024521332	3300032180	Hardwood Forest Soil	MRRAVCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR
Ga0335070_100089934	3300032829	Soil	VPRFLCRVLGHRLPRRRRPFFLTERYQRCERCGERVRLRDR
Ga0335070_100461272	3300032829	Soil	MRRVMCRIVGHRLPRRRRPFFLTERYQRCERCGARVRLRGR
Ga0335081_107232322	3300032892	Soil	MARLLCRILGHRLPRRRRPFFLTERYQRCERCGERVRLRDR
Ga0335069_1002268110	3300032893	Soil	MRRVLCRIVGHRLPRRHRPFFLTERYQRCERCGARIRLRGR
Ga0335077_112612472	3300033158	Soil	VRRHLCRVIGHRLPRRRRPFFLTERYQRCERCGERVRL
Ga0334722_101116891	3300033233	Sediment	VNGPAKRFLCTVLGHKLPRRKRPFFLIERHQRCERCGERVRLKGR
Ga0247830_107423163	3300033551	Soil	VRKKGRVLGHRLPRRKRPFFLTERFQRCERCGERIRLKDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091046

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences