NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091234

Metagenome / Metatranscriptome Family F091234

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091234
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 46 residues
Representative Sequence VNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVK
Number of Associated Samples 75
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.87 %
% of genes near scaffold ends (potentially truncated) 99.07 %
% of genes from short scaffolds (< 2000 bps) 99.07 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.327 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(75.701 % of family members)
Environment Ontology (ENVO) Unclassified
(88.785 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(77.570 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.56%    β-sheet: 0.00%    Coil/Unstructured: 69.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.33 %
All OrganismsrootAll Organisms4.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005331|Ga0070670_101645092Not Available590Open in IMG/M
3300005335|Ga0070666_10825123Not Available684Open in IMG/M
3300005618|Ga0068864_102021102Not Available582Open in IMG/M
3300005842|Ga0068858_101072338Not Available790Open in IMG/M
3300009092|Ga0105250_10276965Not Available721Open in IMG/M
3300009553|Ga0105249_11194237Not Available832Open in IMG/M
3300009553|Ga0105249_12402731Not Available600Open in IMG/M
3300009973|Ga0105136_112281Not Available532Open in IMG/M
3300009976|Ga0105128_109923Not Available645Open in IMG/M
3300009980|Ga0105135_113657Not Available656Open in IMG/M
3300009990|Ga0105132_128478Not Available589Open in IMG/M
3300009994|Ga0105126_1022444Not Available696Open in IMG/M
3300010371|Ga0134125_11862030Not Available654Open in IMG/M
3300010397|Ga0134124_11323386Not Available744Open in IMG/M
3300010403|Ga0134123_12109326Not Available624Open in IMG/M
3300010403|Ga0134123_12405362Not Available592Open in IMG/M
3300014968|Ga0157379_12259349Not Available541Open in IMG/M
3300015270|Ga0182183_1008445Not Available1010Open in IMG/M
3300015273|Ga0182102_1014757Not Available683Open in IMG/M
3300015280|Ga0182100_1075798Not Available555Open in IMG/M
3300015280|Ga0182100_1079062Not Available547Open in IMG/M
3300015284|Ga0182101_1055151Not Available618Open in IMG/M
3300015290|Ga0182105_1058687Not Available625Open in IMG/M
3300015290|Ga0182105_1059553Not Available622Open in IMG/M
3300015297|Ga0182104_1045381Not Available707Open in IMG/M
3300015297|Ga0182104_1088413Not Available564Open in IMG/M
3300015301|Ga0182184_1044784Not Available664Open in IMG/M
3300015301|Ga0182184_1072301Not Available566Open in IMG/M
3300015301|Ga0182184_1087667Not Available529Open in IMG/M
3300015306|Ga0182180_1080488Not Available534Open in IMG/M
3300015311|Ga0182182_1079260Not Available590Open in IMG/M
3300015311|Ga0182182_1086537Not Available571Open in IMG/M
3300015311|Ga0182182_1095601Not Available551Open in IMG/M
3300015312|Ga0182168_1073371Not Available640Open in IMG/M
3300015312|Ga0182168_1076566Not Available631Open in IMG/M
3300015312|Ga0182168_1094657Not Available582Open in IMG/M
3300015315|Ga0182120_1087908Not Available602Open in IMG/M
3300015315|Ga0182120_1115247Not Available542Open in IMG/M
3300015315|Ga0182120_1118927Not Available536Open in IMG/M
3300015316|Ga0182121_1074892Not Available659Open in IMG/M
3300015319|Ga0182130_1043132Not Available758Open in IMG/M
3300015320|Ga0182165_1112082All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae562Open in IMG/M
3300015320|Ga0182165_1133602Not Available524Open in IMG/M
3300015326|Ga0182166_1093876Not Available595Open in IMG/M
3300015326|Ga0182166_1108041Not Available565Open in IMG/M
3300015329|Ga0182135_1066455Not Available697Open in IMG/M
3300015329|Ga0182135_1083171Not Available642Open in IMG/M
3300015330|Ga0182152_1081689Not Available648Open in IMG/M
3300015333|Ga0182147_1163955Not Available509Open in IMG/M
3300015335|Ga0182116_1108031Not Available627Open in IMG/M
3300015335|Ga0182116_1112494Not Available617Open in IMG/M
3300015335|Ga0182116_1121656Not Available597Open in IMG/M
3300015337|Ga0182151_1116286Not Available582Open in IMG/M
3300015337|Ga0182151_1125672Not Available565Open in IMG/M
3300015337|Ga0182151_1151016Not Available523Open in IMG/M
3300015338|Ga0182137_1108925Not Available624Open in IMG/M
3300015338|Ga0182137_1144452Not Available552Open in IMG/M
3300015339|Ga0182149_1129410Not Available570Open in IMG/M
3300015340|Ga0182133_1119590Not Available618Open in IMG/M
3300015340|Ga0182133_1161741Not Available543Open in IMG/M
3300015348|Ga0182115_1101845All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum903Open in IMG/M
3300015348|Ga0182115_1254525All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum558Open in IMG/M
3300015349|Ga0182185_1134170Not Available730Open in IMG/M
3300015349|Ga0182185_1259021Not Available530Open in IMG/M
3300015349|Ga0182185_1259356Not Available530Open in IMG/M
3300015350|Ga0182163_1215026Not Available602Open in IMG/M
3300015352|Ga0182169_1276706Not Available543Open in IMG/M
3300015353|Ga0182179_1055751Not Available1092Open in IMG/M
3300015354|Ga0182167_1340020Not Available526Open in IMG/M
3300017408|Ga0182197_1096832Not Available597Open in IMG/M
3300017408|Ga0182197_1121695Not Available547Open in IMG/M
3300017408|Ga0182197_1128550Not Available536Open in IMG/M
3300017412|Ga0182199_1108364Not Available646Open in IMG/M
3300017421|Ga0182213_1210692Not Available554Open in IMG/M
3300017422|Ga0182201_1041774Not Available765Open in IMG/M
3300017432|Ga0182196_1078855Not Available638Open in IMG/M
3300017432|Ga0182196_1081072Not Available632Open in IMG/M
3300017432|Ga0182196_1121335Not Available550Open in IMG/M
3300017435|Ga0182194_1100644Not Available591Open in IMG/M
3300017439|Ga0182200_1065456Not Available693Open in IMG/M
3300017439|Ga0182200_1162647Not Available504Open in IMG/M
3300017440|Ga0182214_1116788Not Available577Open in IMG/M
3300017445|Ga0182198_1154366Not Available561Open in IMG/M
3300017691|Ga0182212_1115729Not Available605Open in IMG/M
3300020023|Ga0182178_1006795Not Available759Open in IMG/M
3300020023|Ga0182178_1018329Not Available544Open in IMG/M
3300028050|Ga0268328_1029465Not Available692Open in IMG/M
3300028056|Ga0268330_1005512Not Available1107Open in IMG/M
3300028058|Ga0268332_1077125Not Available508Open in IMG/M
3300028141|Ga0268326_1008982Not Available578Open in IMG/M
3300028151|Ga0268308_1031030Not Available518Open in IMG/M
3300028152|Ga0268336_1018088Not Available596Open in IMG/M
3300028253|Ga0268316_1021829Not Available525Open in IMG/M
3300028256|Ga0268304_1014985Not Available512Open in IMG/M
3300028472|Ga0268315_1018625Not Available570Open in IMG/M
3300032466|Ga0214503_1188832Not Available642Open in IMG/M
3300032469|Ga0214491_1036779All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1155Open in IMG/M
3300032697|Ga0214499_1227887Not Available575Open in IMG/M
3300032699|Ga0214494_1079496Not Available622Open in IMG/M
3300032812|Ga0314745_1002346Not Available2745Open in IMG/M
3300032812|Ga0314745_1060385Not Available814Open in IMG/M
3300032824|Ga0314735_1106248Not Available516Open in IMG/M
3300032913|Ga0314739_1042372All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum858Open in IMG/M
3300032914|Ga0314750_1040238Not Available1057Open in IMG/M
3300032934|Ga0314741_1126252Not Available580Open in IMG/M
3300032959|Ga0314738_1072109Not Available617Open in IMG/M
3300033535|Ga0314759_1275086Not Available533Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere75.70%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere8.41%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated4.67%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009973Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaGHost-AssociatedOpen in IMG/M
3300009976Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017691Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028141Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028253Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028256Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032466Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032469Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032697Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032699Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032812Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032824Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032913Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032914Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032934Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032959Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033535Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070670_10164509223300005331Switchgrass RhizosphereVNKSRRDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVKRKL
Ga0070666_1082512323300005335Switchgrass RhizosphereMVNKSRRDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVKRKLTSKSSRSNVRRP*ST*KNS
Ga0068864_10202110213300005618Switchgrass RhizosphereVNKSRRDDNNAPGSQSLNQLDNF*IDLNEATAMRPVAKAQIYSVKQKL
Ga0068858_10107233833300005842Switchgrass RhizosphereVNKSRRDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVKRKLTSK
Ga0105250_1027696513300009092Switchgrass RhizosphereMNKSRQDDSDVPGSQSLDKLGNF*KDLNEATTMRPVAKAQIYSVKQKLTSK
Ga0105249_1119423713300009553Switchgrass RhizosphereVNKSRRDNSNAPGSQSLDKIDNF*IDLNEATAMRPVAKAQIYSVKQKLTS
Ga0105249_1240273113300009553Switchgrass RhizosphereVNKSRQDDSDAPGSQSLDKLDNF*IDLNEATTIRPVAKAQIYSV
Ga0105136_11228123300009973Switchgrass AssociatedVNKSRRDDGDATGSQSLDKLDNF*IDLNEATAMRPVAKAQIY
Ga0105128_10992313300009976Switchgrass AssociatedVNKS**DDSDALGSQSLDKLDNF*IDRNEATVMRSEGKAQIY
Ga0105135_11365713300009980Switchgrass AssociatedVNKSRRDDSDAPRSQSLDKLNNF*IDLNEATAMRPVAKAQIYSVKQKLTS
Ga0105132_12847813300009990Switchgrass AssociatedVNKSRRDDNDTPGSQSLDKLDNF*IDLNEAIAMRPVAKAQIYSVKQKLTSKSSRSNVRRP
Ga0105126_102244413300009994Switchgrass AssociatedVNKSRRDNSDAPGSQSLDELDNF*IDLNEATAMRPVAKAQIYLIKQKLTIKPSRSNV
Ga0134125_1186203023300010371Terrestrial SoilVNKSRQCDSDTPGSQSLYQLDNFCIDLNEATAMRPVANAQIYSVKRK
Ga0134124_1132338613300010397Terrestrial SoilVNKS*RDDSDTPGSQSLDKLDIF*IDLNEATAIRPEAKAQIYSVNKNLSADQVARM*CVL
Ga0134123_1210932613300010403Terrestrial SoilVNKSRRDDSDAPESRSLDKLGNF*IDLNEATAMRLVAKAQI
Ga0134123_1240536213300010403Terrestrial SoilVNKSRRDDSDAPGSQSLDELDNFRIDLNEATAMRPVAKAQIYSVKQKLTSKPSRSNVRRP
Ga0157379_1225934913300014968Switchgrass RhizosphereVNKSRRDDSDASRSQNLDELDNF*IDLNEATAMRPVAKAQIYSVKQKLTSKPSRSNVR
Ga0182183_100844513300015270Switchgrass PhyllosphereVNKSRRDDSDASRSQNLDELDNF*IDLNEATAMRPVAKAQIYSVKRKLT
Ga0182102_101475713300015273Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNF*IDLNEATTMRPVAKAQIYLVKLKLT
Ga0182100_107579823300015280Switchgrass PhyllosphereVNKSRRDDNDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQ
Ga0182100_107906213300015280Switchgrass PhyllosphereMNKFRRDDSDAPRSQSLDKLDTF*IDLNEATTMRPVAKAQI
Ga0182101_105515113300015284Switchgrass PhyllosphereVNKSRRDNSDTPGSQSLDKLDNFLIDLNEATAMCPVAKAQIYSVKQK
Ga0182105_105868713300015290Switchgrass PhyllosphereVNKSKRDDIDTPGSQSLDKFDNF*IDLNEATKMRPVAK
Ga0182105_105955323300015290Switchgrass PhyllosphereVNKSRRDDSDTPGSQSLDKLDNF*IDLNEATAMRQVAKAQIYSVKQK
Ga0182104_104538113300015297Switchgrass PhyllosphereVNKSRRDDNDAPGSQSLDKLNKF*IDLNEATAMRPVAKAQIY
Ga0182104_108841323300015297Switchgrass PhyllosphereVNKSRQDDSDTPRSQSLDKLDNF*IDLNESTEMRLEAKAQIYSVNDHLPADQI
Ga0182184_104478413300015301Switchgrass PhyllosphereVNKSRRDNSDTPGSQSLDKLDNF*IDLNEATAMRPVAKA
Ga0182184_107230113300015301Switchgrass PhyllosphereMNKSRRDDSDAPGSQSLDELDNF*IDLNEATAIRLVAKAQIYSVKQKL
Ga0182184_108766723300015301Switchgrass PhyllosphereVNKSR*DDSDAPKSQSLDKLDNF*IDLNEATAMRPVAKAQI
Ga0182180_108048813300015306Switchgrass PhyllosphereVNKSRRDNSDAPKSQSLDELDNF*INLNEATAMRPVA
Ga0182182_107926013300015311Switchgrass PhyllosphereVNKSRRDNSDAPGSQSLNKLDNF*IDLNEATAMRPVAKAQIY
Ga0182182_108653713300015311Switchgrass PhyllosphereVNKSRRDDSDTPGSQSLDKLNNF*IDLNEATAMRPEAKAQIYSVNKNL
Ga0182182_109560113300015311Switchgrass PhyllosphereVNKYRRDDSDAPGSQSLDELDNF*IDLNEATAMRPVAKAQIYS
Ga0182168_107337113300015312Switchgrass PhyllosphereVNKSRRDDGDAPGSQSLDQLDNF*IDLNEATAMRPVAKAQIY
Ga0182168_107656613300015312Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVKQKLTS
Ga0182168_109465713300015312Switchgrass PhyllosphereVNKSRRDNSDAPGSQSLDKLDNF*IDLNEVTAMRPVAKAQIYSV
Ga0182120_108790813300015315Switchgrass PhyllosphereVNKSRQDDSDAPESQSLDKLDNF*IYLNEATAMRPVAKAQIYSVKQKLTSKSSRLN
Ga0182120_111524713300015315Switchgrass PhyllosphereVNKSRRDDSDAPRSQSLDKLDNF*IDLNEATTMRPVAKA
Ga0182120_111892723300015315Switchgrass PhyllosphereMNKSR*DDSDVPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVK*KLTSKSSR
Ga0182121_107489213300015316Switchgrass PhyllosphereVNKSRQDDSDAPGNQRLDKLDNF*IDLNEATAMRPVGKAQIY
Ga0182130_104313213300015319Switchgrass PhyllosphereVNKSRQDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVKQKLTSKPNRSNVRCP
Ga0182165_111208213300015320Switchgrass PhyllosphereVNKSRRDDSDVPGSQSLDELDNF*IDLNEATTMRPI
Ga0182165_113360213300015320Switchgrass PhyllosphereMNKSR*DDSDAPGSQSLDELDNF*IDLNEATVMRPVA
Ga0182166_109387613300015326Switchgrass PhyllosphereVNKSR*DDSDAPGSQNLDELDNF*IDLNEATAMRPIAKAQIYSVKRKLTSKLSRSNVRRP
Ga0182166_110804113300015326Switchgrass PhyllosphereLVNKSK*DDSDAPGSQSLDKLDNF*IDLNEATMMRLVAKA*
Ga0182135_106645513300015329Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDELDNF*IDLNEATAMRPVGKAQIYSVKR
Ga0182135_108317113300015329Switchgrass PhyllosphereVNKSRRDNSDAPESQSLDKLDNF*IDLNEATAMRPVAKAQ
Ga0182152_108168913300015330Switchgrass PhyllosphereVNKSRRDDSDVPGSQSLDKLDNF*IDLKEATAMRPVANAQMYSVKRK
Ga0182147_116395513300015333Switchgrass PhyllosphereVNKSRRDDNDTPGSQSLDKLDNF*IDLNEATAMRPEAKAQIYS
Ga0182116_110803113300015335Switchgrass PhyllosphereVNKSRRDNSDALESQSLDKLDNF*IDLNEATVMRPVAKAQIYSV
Ga0182116_111249413300015335Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIYSVKRK
Ga0182116_112165613300015335Switchgrass PhyllosphereMNKYRRDESDTPGSQSLDELDKF*IDLNEATAMRPVTKAQIYSVKQKLTSKSSRSNVRRP
Ga0182151_111628623300015337Switchgrass PhyllosphereVNKSRRGDNDAPGSQSLDKPDNF*IYLNEATAMRPVAKAQI
Ga0182151_112567213300015337Switchgrass PhyllosphereVNKSRRDDGDAPGSQSLDEFDNF*IDLNEATAMNPVAKAQIYSVKQKLTSKSSRSNVRRR*S
Ga0182151_115101613300015337Switchgrass PhyllosphereVNKSRQDDSDAPGSQSLDKLDNF*IDLNEATAMRPVAKAQIY
Ga0182137_110892513300015338Switchgrass PhyllosphereVNKSRRDDIDTPGSQSLDKFDNF*IDLNEATVMRPVAK
Ga0182137_114445213300015338Switchgrass PhyllosphereVNKSRRDDSDTPGSQSQDKLDNF*IDLNEATAMRPEAKAQIYSVNEN
Ga0182149_112941013300015339Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLGKLDNF*IDLNEATAMRPV
Ga0182133_111959013300015340Switchgrass PhyllosphereVNKSRRDDIDTPGSQSLDKLDNF*IDLNEATVMRPVAKAQI
Ga0182133_116174113300015340Switchgrass PhyllosphereVNKSRRDDSDAPRNQSLDKLDNFLIDLNEATAMRPVAKAQIYSVKQKLTSKSSCSNVR
Ga0182115_110184523300015348Switchgrass PhyllosphereVNKSRRDDNNAPGSQSLNQLDNF*IDLNEATAMRPVAKAQIYSVKQK
Ga0182115_125452513300015348Switchgrass PhyllosphereMNKSRRDDSDAPRSQSLDKLDNF*IYLNEATAMRPVAKAQIYSVKQKLTSKS
Ga0182185_113417013300015349Switchgrass PhyllosphereVNKSR*DDSDAPGSQNLDELDNF*IDLNEATAMRPIAKAQIYSVKRKLTSKLSRSNVRRPGST*KN
Ga0182185_125902113300015349Switchgrass PhyllosphereVNKFRRDDSDTPGSQSLDKLDNF*IDLNEATAMRPEAKAQI
Ga0182185_125935623300015349Switchgrass PhyllosphereMNKSRRDDSDAPGSQSLDELDNF*IDLNEATAMRPVAKAQIYSVKRKLTSK
Ga0182163_121502613300015350Switchgrass PhyllosphereVNKSRRDDSDTPRSQSFDQLNNF*IDLNEATAMRPVAKAQIYSVKQ
Ga0182169_127670613300015352Switchgrass PhyllosphereVNKSRRDDSDAPESQSLDELDNF*IDLNEATAMRPIAKA
Ga0182179_105575113300015353Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDQLDNF*IDLNEATAMRLVAKAQIYSVKRKLTS
Ga0182167_134002023300015354Switchgrass PhyllosphereVNKSRRDDSDTPESQSLDELDNY*IDLNEATAMRPIAKAQIYSVK*KLTSK
Ga0182197_109683213300017408Switchgrass PhyllosphereVNKSRRDDSNTPGSQSLDKLDNFXIDLNKATAMRPKAKAQIYSVNE
Ga0182197_112169523300017408Switchgrass PhyllosphereVNKSRRDDSDAPRSQSLDELDNFXIDLNEATAMRPVAKAQIYSVKXK
Ga0182197_112855013300017408Switchgrass PhyllosphereMNKYRRDDSDTPGSQSLDELDNFXIDLNKATAMRPVAKAQIYSIKQKLTSKSSRSNVR
Ga0182199_110836413300017412Switchgrass PhyllosphereVNKSRXDDSDTLRSQSLDKLDNFXIDLNETTAMRPVAKAQIYSVKRK
Ga0182213_121069213300017421Switchgrass PhyllosphereLVNKSRRDNSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVK
Ga0182201_104177413300017422Switchgrass PhyllosphereVNKSRRDDRDAPGSQGLDKLDNFXIDLNEATAIRPVAKAQIYSVK
Ga0182196_107885513300017432Switchgrass PhyllosphereVNKSRRDNSDAPRSQSLDKLDNFXIDLNEATAMRPVAKAQ
Ga0182196_108107213300017432Switchgrass PhyllosphereVNKSKXDNSNAPGSQSLDKLDNFXIDLNEATTMHPVAK
Ga0182196_112133513300017432Switchgrass PhyllosphereVNKSRRDDSDTPGSQSLDKLDNFXIDLNESTAIRPVAKTQIY
Ga0182194_110064413300017435Switchgrass PhyllosphereVNKSRRDDSDTPGGQSLYKLDNFXIDLNEATTMRPEAKAQIYSVNEN
Ga0182200_106545623300017439Switchgrass PhyllosphereVNKSRQDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQI
Ga0182200_116264713300017439Switchgrass PhyllosphereEFVNKSRRDNSDTPGSQSLDQLDNFLIDLNEATAMRPIAKAQIYSVKRKLTSKSSRSNVRRP
Ga0182214_111678813300017440Switchgrass PhyllosphereVNKSRQDNSDAPESQSLDKLDNFXIDLNEATAMRPVAKAQIYS
Ga0182198_115436623300017445Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKTQIYSVKR
Ga0182212_111572923300017691Switchgrass PhyllosphereVNKSRRDDSDTPGSQSLDKLDNFXIDLNQATAMRLEAKTQIYSVNEN
Ga0182178_100679513300020023Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVKQKLT
Ga0182178_101832913300020023Switchgrass PhyllosphereVNKYRRDDSDAPGSQSLDELDNFXIDLNEATAMRPVAKAQIYSVKXKLTS
Ga0268328_102946513300028050PhyllosphereVNKSRRDNSDAPGSQSLDKLDNFXIDLNEATAMCPVAKAEIYSV
Ga0268330_100551213300028056PhyllosphereVNKSRRDDSDAPGSQSLDQLDNFXIDLNEATAMRLVAKAQIYLVKRKL
Ga0268332_107712513300028058PhyllosphereMNKSRRDDSDAPGSQSLDELDNFXIDLNEATAMRPVAKA
Ga0268326_100898213300028141PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVKRKLTSKSSR
Ga0268308_103103013300028151PhyllosphereVNKSRRDDSDAPRSQSLDKLDNFXIDLNEATAMRPVAK
Ga0268336_101808813300028152PhyllosphereVNKSRRNDSDTPGSQSLDKLDNFXIDLNEATAMRLEAKAQIYSVNKNLPA
Ga0268316_102182913300028253PhyllosphereVNKSRRDDSDVPGSQSLDKLDNFXIDLNEATTMRP
Ga0268304_101498513300028256PhyllosphereVNKSRRDDSDAPGSQSLDQLDNFXIDLNEATAMRLVAKAQIY
Ga0268315_101862513300028472PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVCKT
Ga0214503_118883213300032466Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVK
Ga0214491_103677933300032469Switchgrass PhyllosphereVNKSRRDDSDTPGNQNLDKLDNFXIDLNEATAMRPVAKAQIYS
Ga0214499_122788723300032697Switchgrass PhyllosphereVNKSRRDDNDAPGSQSLDKLDNFXINLNEATAMRPVAKAQIYSVKQKLTS
Ga0214494_107949613300032699Switchgrass PhyllosphereVNKSRRDDNDAPESQSLDNNNFXIDLNEATTMRPVA
Ga0314745_100234683300032812Switchgrass PhyllosphereVNKSRRDDSDTPGSQSLDKLDNFLIDLNEATAMRSEAKTHIYSVNKNLPADQVARM
Ga0314745_106038513300032812Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVKRK
Ga0314735_110624813300032824Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPV
Ga0314739_104237223300032913Switchgrass PhyllosphereVNKSRRDDSDAPGIQSLDELDNFXIDLNEATAMRPVAKAQIYSVKRKL
Ga0314750_104023823300032914Switchgrass PhyllosphereVNKSIRDDSDAPGSQSLDKLDNFLIDLNEATAMRPVAKTQIYSVKRKLTS
Ga0314741_112625213300032934Switchgrass PhyllosphereVNKSRRDDSDAPGSQSLDKLDNFXIDLNEATAMRPVAKAQIYSVKXKL
Ga0314738_107210913300032959Switchgrass PhyllosphereVNKSRQDDNDTPGSQSLDKLDIFXKDLNEATAMRP
Ga0314759_127508613300033535Switchgrass PhyllosphereVNKSRRDDSDTPGSQSLDKLDNFXIDLNEATAMRSEAKTQIYS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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