Metagenome Family F091251

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091251
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	45 residues
Representative Sequence	LSLTEIMRALQDFGTFIVIILLAYVVYKAAILLEAMSNRIKGEKD
Number of Associated Samples	28
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	54.21 %
% of genes near scaffold ends (potentially truncated)	18.69 %
% of genes from short scaffolds (< 2000 bps)	54.21 %
Associated GOLD sequencing projects	24
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (71.963 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment (35.514 % of family members)
Environment Ontology (ENVO)	Unclassified (56.075 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline) (39.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.53% β-sheet: 0.00% Coil/Unstructured: 42.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF09826	Beta_propel	43.93
PF00579	tRNA-synt_1b	3.74
PF03484	B5	2.80
PF13662	Toprim_4	1.87
PF08240	ADH_N	1.87
PF00106	adh_short	0.93
PF00497	SBP_bac_3	0.93
PF01037	AsnC_trans_reg	0.93
PF13561	adh_short_C2	0.93
PF13847	Methyltransf_31	0.93
PF04930	FUN14	0.93
PF04055	Radical_SAM	0.93
PF06418	CTP_synth_N	0.93
PF08494	DEAD_assoc	0.93
PF01546	Peptidase_M20	0.93
PF08704	GCD14	0.93
PF01636	APH	0.93
PF02771	Acyl-CoA_dh_N	0.93
PF01656	CbiA	0.93
PF01036	Bac_rhodopsin	0.93
PF00142	Fer4_NifH	0.93
PF01409	tRNA-synt_2d	0.93
PF01012	ETF	0.93
PF02518	HATPase_c	0.93
PF00881	Nitroreductase	0.93
PF07690	MFS_1	0.93
PF02018	CBM_4_9	0.93
PF00977	His_biosynth	0.93
PF13185	GAF_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	3.74
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	3.74
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	2.80
COG0016	Phenylalanyl-tRNA synthetase alpha subunit	Translation, ribosomal structure and biogenesis [J]	0.93
COG0504	CTP synthase (UTP-ammonia lyase)	Nucleotide transport and metabolism [F]	0.93
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	0.93
COG1348	Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC	Coenzyme transport and metabolism [H]	0.93
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.93
COG2024	O-phosphoseryl-tRNA(Cys) synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.93
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.93
COG2383	Uncharacterized membrane protein, Fun14 family	Function unknown [S]	0.93
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.93
COG5524	Bacteriorhodopsin	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.77 %
Unclassified	root	N/A	25.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.83 %
Unclassified	root	N/A	25.23 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	71.96 %
Unclassified	root	N/A	25.23 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	20.56 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	10.28 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	3.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	16.82 %
Candidatus Aenigmarchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota	3.74 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	10.28 %
unclassified Aenigmarchaeota	no rank	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota	3.74 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	7.48 %
Candidatus Aenigmarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	3.74 %
Candidatus Bathyarchaeota archaeon BA2	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA2	2.80 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001751\|JGI2172J19969_10002852	All Organisms → cellular organisms → Archaea → Euryarchaeota	7765	Open in IMG/M
3300001751\|JGI2172J19969_10005518	All Organisms → cellular organisms → Archaea → Euryarchaeota	5473	Open in IMG/M
3300001751\|JGI2172J19969_10015230	All Organisms → cellular organisms → Archaea → Euryarchaeota	2975	Open in IMG/M
3300001751\|JGI2172J19969_10026886	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2089	Open in IMG/M
3300001752\|JGI2173J19968_10000264	All Organisms → cellular organisms → Archaea	18694	Open in IMG/M
3300001752\|JGI2173J19968_10219525	Not Available	526	Open in IMG/M
3300001782\|WOR52_10005227	All Organisms → cellular organisms → Archaea	19266	Open in IMG/M
3300001782\|WOR52_10010547	All Organisms → cellular organisms → Archaea	10774	Open in IMG/M
3300001782\|WOR52_10020767	All Organisms → cellular organisms → Archaea	6977	Open in IMG/M
3300001854\|JGI24422J19971_10171475	All Organisms → cellular organisms → Archaea	982	Open in IMG/M
3300001854\|JGI24422J19971_10183839	All Organisms → cellular organisms → Archaea	931	Open in IMG/M
3300001854\|JGI24422J19971_10201260	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	867	Open in IMG/M
3300001854\|JGI24422J19971_10231260	All Organisms → cellular organisms → Archaea → TACK group	779	Open in IMG/M
3300001854\|JGI24422J19971_10239507	All Organisms → cellular organisms → Archaea	759	Open in IMG/M
3300001854\|JGI24422J19971_10254664	Not Available	724	Open in IMG/M
3300001854\|JGI24422J19971_10305676	Not Available	632	Open in IMG/M
3300001854\|JGI24422J19971_10362530	All Organisms → cellular organisms → Archaea	561	Open in IMG/M
3300002053\|SMTZ23_10071195	All Organisms → cellular organisms → Archaea	5095	Open in IMG/M
3300003332\|GBSed_10009553	All Organisms → cellular organisms → Archaea	8728	Open in IMG/M
3300009034\|Ga0115863_1018528	All Organisms → cellular organisms → Archaea → Euryarchaeota	9570	Open in IMG/M
3300009034\|Ga0115863_1022289	Not Available	8622	Open in IMG/M
3300009034\|Ga0115863_1067844	Not Available	4520	Open in IMG/M
3300009034\|Ga0115863_1089932	All Organisms → cellular organisms → Bacteria	3847	Open in IMG/M
3300009034\|Ga0115863_1173335	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2620	Open in IMG/M
3300009034\|Ga0115863_1183151	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	2535	Open in IMG/M
3300009034\|Ga0115863_1190025	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2481	Open in IMG/M
3300009034\|Ga0115863_1206387	All Organisms → cellular organisms → Archaea → Euryarchaeota	2364	Open in IMG/M
3300009034\|Ga0115863_1263095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2046	Open in IMG/M
3300009034\|Ga0115863_1368502	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	1673	Open in IMG/M
3300009034\|Ga0115863_1453540	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1476	Open in IMG/M
3300009034\|Ga0115863_1666803	All Organisms → cellular organisms → Archaea	1169	Open in IMG/M
3300009034\|Ga0115863_1784019	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1061	Open in IMG/M
3300009150\|Ga0114921_10231530	All Organisms → Viruses → Predicted Viral	1300	Open in IMG/M
3300009150\|Ga0114921_10321630	All Organisms → cellular organisms → Archaea	1107	Open in IMG/M
3300009150\|Ga0114921_10825903	All Organisms → cellular organisms → Archaea	688	Open in IMG/M
3300009150\|Ga0114921_11018317	All Organisms → cellular organisms → Archaea	618	Open in IMG/M
3300009488\|Ga0114925_10776042	Not Available	688	Open in IMG/M
3300009528\|Ga0114920_10012688	Not Available	4554	Open in IMG/M
3300010324\|Ga0129297_10306771	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	714	Open in IMG/M
3300010324\|Ga0129297_10504230	Not Available	532	Open in IMG/M
3300010324\|Ga0129297_10547167	Not Available	505	Open in IMG/M
3300010328\|Ga0129298_10049074	All Organisms → cellular organisms → Archaea → TACK group	2012	Open in IMG/M
3300010328\|Ga0129298_10124108	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1220	Open in IMG/M
3300010328\|Ga0129298_10127787	Not Available	1200	Open in IMG/M
3300010328\|Ga0129298_10132306	All Organisms → cellular organisms → Archaea	1178	Open in IMG/M
3300010328\|Ga0129298_10279245	Not Available	773	Open in IMG/M
3300010328\|Ga0129298_10398266	Not Available	632	Open in IMG/M
3300010328\|Ga0129298_10455261	Not Available	584	Open in IMG/M
3300014886\|Ga0180300_10003951	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	7014	Open in IMG/M
3300022204\|Ga0224496_10041670	All Organisms → cellular organisms → Archaea → TACK group	2124	Open in IMG/M
3300022204\|Ga0224496_10305533	Not Available	650	Open in IMG/M
3300022205\|Ga0224511_10255585	All Organisms → cellular organisms → Archaea	1550	Open in IMG/M
3300022221\|Ga0224506_10017919	All Organisms → cellular organisms → Archaea	3869	Open in IMG/M
3300022551\|Ga0212089_10141122	All Organisms → cellular organisms → Archaea	1239	Open in IMG/M
3300024263\|Ga0209978_10035549	All Organisms → cellular organisms → Archaea → Euryarchaeota	2488	Open in IMG/M
3300027888\|Ga0209635_10004483	All Organisms → cellular organisms → Archaea	10956	Open in IMG/M
3300027888\|Ga0209635_10009895	All Organisms → cellular organisms → Archaea → Euryarchaeota	7536	Open in IMG/M
3300027888\|Ga0209635_10047999	All Organisms → cellular organisms → Archaea	3479	Open in IMG/M
3300027888\|Ga0209635_10075615	Not Available	2754	Open in IMG/M
3300027888\|Ga0209635_10087686	All Organisms → cellular organisms → Archaea	2549	Open in IMG/M
3300027888\|Ga0209635_10238258	Not Available	1466	Open in IMG/M
3300027888\|Ga0209635_10639985	Not Available	788	Open in IMG/M
3300027888\|Ga0209635_10705592	All Organisms → cellular organisms → Archaea	737	Open in IMG/M
3300027888\|Ga0209635_11140652	Not Available	525	Open in IMG/M
3300027893\|Ga0209636_10000353	All Organisms → cellular organisms → Archaea	43435	Open in IMG/M
3300027893\|Ga0209636_10013472	All Organisms → cellular organisms → Archaea	8322	Open in IMG/M
3300027893\|Ga0209636_10014032	Not Available	8151	Open in IMG/M
3300027893\|Ga0209636_10055697	All Organisms → cellular organisms → Archaea	3896	Open in IMG/M
3300027893\|Ga0209636_10064513	All Organisms → cellular organisms → Archaea	3594	Open in IMG/M
3300027893\|Ga0209636_10120773	All Organisms → cellular organisms → Archaea → Euryarchaeota	2497	Open in IMG/M
3300027893\|Ga0209636_10183934	All Organisms → cellular organisms → Archaea	1934	Open in IMG/M
3300027893\|Ga0209636_10268753	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1520	Open in IMG/M
3300027893\|Ga0209636_10381330	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1207	Open in IMG/M
3300027893\|Ga0209636_10641394	All Organisms → cellular organisms → Archaea	845	Open in IMG/M
3300027893\|Ga0209636_10727143	All Organisms → cellular organisms → Archaea	773	Open in IMG/M
3300027893\|Ga0209636_10978747	Not Available	624	Open in IMG/M
3300027893\|Ga0209636_11104042	All Organisms → cellular organisms → Archaea	570	Open in IMG/M
3300027901\|Ga0209427_10008650	All Organisms → cellular organisms → Archaea → Euryarchaeota	11438	Open in IMG/M
3300027901\|Ga0209427_10117317	All Organisms → cellular organisms → Archaea → Euryarchaeota	2344	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1028975	All Organisms → cellular organisms → Archaea	2648	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1126971	All Organisms → cellular organisms → Archaea	1016	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1149845	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA2	907	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1204346	Not Available	729	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1290162	Not Available	566	Open in IMG/M
(restricted) 3300031593\|Ga0315307_1004680	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	6068	Open in IMG/M
(restricted) 3300031593\|Ga0315307_1050461	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1593	Open in IMG/M
(restricted) 3300031593\|Ga0315307_1224713	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	612	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1003486	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	9001	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1009472	All Organisms → cellular organisms → Archaea	5255	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1013858	All Organisms → cellular organisms → Archaea	4238	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1030932	All Organisms → cellular organisms → Archaea	2624	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1179642	Not Available	833	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1246184	Not Available	665	Open in IMG/M
(restricted) 3300031604\|Ga0315309_1277136	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA2	610	Open in IMG/M
(restricted) 3300031806\|Ga0315306_10000011	All Organisms → cellular organisms → Archaea	106933	Open in IMG/M
(restricted) 3300031806\|Ga0315306_10000072	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	46220	Open in IMG/M
(restricted) 3300031806\|Ga0315306_10044781	All Organisms → cellular organisms → Archaea → TACK group	1738	Open in IMG/M
(restricted) 3300031806\|Ga0315306_10210898	All Organisms → cellular organisms → Archaea	717	Open in IMG/M
(restricted) 3300031806\|Ga0315306_10263863	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon BA2	625	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10075373	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon	1719	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10282213	Not Available	707	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10298924	All Organisms → cellular organisms → Archaea	680	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10321022	Not Available	647	Open in IMG/M
(restricted) 3300031877\|Ga0315314_1000014	All Organisms → cellular organisms → Archaea	311477	Open in IMG/M
(restricted) 3300031877\|Ga0315314_1000023	All Organisms → cellular organisms → Archaea	243038	Open in IMG/M
(restricted) 3300031877\|Ga0315314_1004317	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	10715	Open in IMG/M
(restricted) 3300031898\|Ga0315312_1056109	Not Available	1446	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	63.55%
Freshwater	Environmental → Aquatic → Freshwater	36.45%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	42.06%
Lake	Environmental → Aquatic → Freshwater → Lake	36.45%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.89%
Sediment	Environmental → Aquatic → Marine → Sediment	3.74%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.87%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	42.06%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	36.45%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	15.89%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	3.74%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	1.87%

Habitat	Taxonomy	Distribution
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	35.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	26.17%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	12.15%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	10.28%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	6.54%
Marine Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment	3.74%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	3.74%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.93%
Marine Hydrothermal Vent Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001751	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32	Environmental	Open in IMG/M
3300001752	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30	Environmental	Open in IMG/M
3300001782	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_deep_samples	Environmental	Open in IMG/M
3300001854	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54	Environmental	Open in IMG/M
3300002053	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ	Environmental	Open in IMG/M
3300003332	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1	Environmental	Open in IMG/M
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental	Open in IMG/M
3300009150	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009528	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG	Environmental	Open in IMG/M
3300010324	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG	Environmental	Open in IMG/M
3300010328	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG	Environmental	Open in IMG/M
3300014886	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300022205	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_8_1	Environmental	Open in IMG/M
3300022221	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1	Environmental	Open in IMG/M
3300022551	Boni_combined assembly	Environmental	Open in IMG/M
3300024263	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes)	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027893	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)	Environmental	Open in IMG/M
3300027901	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)	Environmental	Open in IMG/M
3300031587 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3	Environmental	Open in IMG/M
3300031593 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP2	Environmental	Open in IMG/M
3300031604 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP4	Environmental	Open in IMG/M
3300031806 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP1	Environmental	Open in IMG/M
3300031876 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP5	Environmental	Open in IMG/M
3300031877 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9	Environmental	Open in IMG/M
3300031898 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI2172J19969_100028523	3300001751	Marine Sediment	LSLAEIMNALQDFGIFIVXILLAYVVYKAAILLEAMSNKIKGEKD*
JGI2172J19969_100055187	3300001751	Marine Sediment	MSLTEIMNALQDFGTFIVIILLAYVVYKAAILLEAMTNKIKGEKTER*
JGI2172J19969_100152301	3300001751	Marine Sediment	MRVLQDFGIFIIIILLAYVVYKISLLIEEISKKIKEKD*
JGI2172J19969_100268864	3300001751	Marine Sediment	LTLTELILVLQDFGIFIIIILLAYVVYKISILIEEISK
JGI2173J19968_100002649	3300001752	Marine Sediment	LSLAEIMNALQDFGIFIVIILLAYVVYKAAILLEAMSNKIKGEKD*
JGI2173J19968_102195251	3300001752	Marine Sediment	LTLIELMRVLQDFGIFIIIILLAYVVYKISLLIEEISKKIKEKD*
WOR52_1000522717	3300001782	Marine Sediment	MFAKLSLTELMRVLQDLGVFIVVILIAYVVYKIATLLEVISTKIKGEKT*
WOR52_100105479	3300001782	Marine Sediment	MIGGFVKLTLTELMRVLQDFGIFVVVILLAYVVYKVGTMIEAITNKIKEKD*
WOR52_100207672	3300001782	Marine Sediment	VLQDFGIFIIIILLAYVVYKISLLIEEISKKIKEKD*
JGI24422J19971_101714752	3300001854	Marine Sediment	LTLTEIMRALQDFGTFIVIILLAYVVYKAAILVEAMSDRIKGEKD*
JGI24422J19971_101838392	3300001854	Marine Sediment	LSLTEIMRALQDFGTFIVIILLAYVVYKAAILLEAMSNRIKGEKD*
JGI24422J19971_102012601	3300001854	Marine Sediment	FGTFIVIILLAYVVYRIATLLEVITSKIKGEKTKI*
JGI24422J19971_102312601	3300001854	Marine Sediment	VKLSLTEIMRAIQDFATFIVIVLLAYVVYRTATLLEAIGNKIRGE
JGI24422J19971_102395071	3300001854	Marine Sediment	VKLTLTELMRVLEDFGTFIVIILLAYVVYRIATLLEVITSKIKGEKTRI*
JGI24422J19971_102546642	3300001854	Marine Sediment	MKLSLAEIMNALQDFGIFIVIILLAYVVYKAAILLEAMSNKIKGEKD*
JGI24422J19971_103056762	3300001854	Marine Sediment	VKLSLTEIMRALQDFATFIVIVLLAYVVYRTATLLEAIGNKIRGEKTEL*
JGI24422J19971_103625301	3300001854	Marine Sediment	XFATFIVIVLLAYVVYRTATLLEAIGNKIRGEKTEL*
SMTZ23_100711953	3300002053	Marine Sediment	MSLTENMNALQDFGTFIVIILLAYVVYKAAILLEAMTNKIKGEKN*
GBSed_100095531	3300003332	Marine Hydrothermal Vent Sediment	ISVDRRLQDLTLTELMRVLQDFGIFIVIILLAYVVYKIGILIEAITRKIRERE*
Ga0115863_10185287	3300009034	Sediment, Intertidal	LEAIGKLALTEITELMRVLQDFGTFIVIILLAYVVYKAAILLEAMSNKIRAEKD*
Ga0115863_102228913	3300009034	Sediment, Intertidal	MRALQDFGIFVVIILLAYVVYRIAILVEVMSKKIQGEKNGA*
Ga0115863_10678443	3300009034	Sediment, Intertidal	MRVLQDFGVFIVIILLAYAVYKAAILIDVIGKKIKGEKD*
Ga0115863_10899322	3300009034	Sediment, Intertidal	MRVLQDFGAFLVIILLAYAVYKAAILIDVIGRKIKGEKD*
Ga0115863_11733352	3300009034	Sediment, Intertidal	MSALQDFGTFIVIILLAYVVYKAAILLEAMSNKIKGEKN*
Ga0115863_11831512	3300009034	Sediment, Intertidal	MIGGIRLTLSELMRALQDFGVFVVVILLAYAVYKVTLLIDAISNKIKGEKD*
Ga0115863_11900252	3300009034	Sediment, Intertidal	MIGGIGKLALTEITELMRMLQDFGTFIVIILLAYVVYKAAILLEVMSNKIKGEKD*
Ga0115863_12063873	3300009034	Sediment, Intertidal	XLQDFGTFIVIILLAYVVYKAAILLEAMSNKIKGEKN*
Ga0115863_12630956	3300009034	Sediment, Intertidal	MRALQDFGTFIVIILLAYVVYKAVILLEAMSDKIKGEKD*
Ga0115863_13685021	3300009034	Sediment, Intertidal	LTLTELMRVLEDFGTFIVIILLAYVVYRIATLVEVI
Ga0115863_14535402	3300009034	Sediment, Intertidal	MRVLQDFGIFIVIILLAYVVYRIGILVEVISNKIKEEKK*
Ga0115863_16668032	3300009034	Sediment, Intertidal	MRALQDFGTFIVIILLAYVVYKVAILLEAMSNRIKGEKD*
Ga0115863_17840192	3300009034	Sediment, Intertidal	LTLTELMRVLQDFGIFIVIILLAYVVYRIGILVEVISNKIKEEKK*
Ga0114921_102315302	3300009150	Deep Subsurface	ESHALMIGGIVKLSLTELMRVLQDFGTFIVIILLAYVVYKVAILLEAMSDKIKGEKD*
Ga0114921_103216302	3300009150	Deep Subsurface	QDFGTFIVIILLAYVVYKAAILLEAMSDKIKGEKN*
Ga0114921_108259031	3300009150	Deep Subsurface	MRVLQDFGTFIVIILLAYAVYKAAILIDVIGKKIKGEKD*
Ga0114921_110183172	3300009150	Deep Subsurface	DFGTFIVIILLAYVVYKAAILLEAMSDKIKGEKD*
Ga0114925_107760421	3300009488	Deep Subsurface	MRVLQDFGTFVVIILLAYAVYKAAMLIDVIGKKIKGEKD*
Ga0114920_100126885	3300009528	Deep Subsurface	MRVLQDFGTFVVIILLAYAVYKAAILIDVIGQKIKGEKD*
Ga0129297_103067712	3300010324	Lake Sediment	LTEIVRVLQDLGAFIVIILLAYVVYKIGNLIEVISQKIKGEKD*
Ga0129297_105042301	3300010324	Lake Sediment	MQVLQDLGIFVVIILVAYVVYKIGILIEVISNKIKGEKD*
Ga0129297_105471672	3300010324	Lake Sediment	PMFGGIRDLTLTELMRLLQDFGIFIVIVLLAYVVYKIGILIEVIGKKVKEEKN*
Ga0129298_100490742	3300010328	Lake Sediment	MRVLQDFGTFVVIVLLAYAVYRTATLLEVISNKIKGEKD*
Ga0129298_101241083	3300010328	Lake Sediment	LAELVRILQDFGIFVVVILLAYVVYKIGILIEVISDKIKGEKD*
Ga0129298_101277872	3300010328	Lake Sediment	LTLSELVRLLQDLGVFVITILIAYVVYRIGVLVEEITSKIRREEDQLSKSEAQRR*
Ga0129298_101323062	3300010328	Lake Sediment	MTLPELVRLLQDFGVFVVVTLLAYVVYGIGVLVEVITNKIRGEKDHPSRLEE*
Ga0129298_102792452	3300010328	Lake Sediment	MLQDLGIFVVIILVAYVVYRIGILIEVISNKIKGEKD*
Ga0129298_103982661	3300010328	Lake Sediment	VIGGIEDLTLTELMRLLQDFGIFIVIVLLAYVVYKIGILIEVIGKKVKEEKD*
Ga0129298_104552611	3300010328	Lake Sediment	MRVLQDLGIFVVIILVAYVVYKIGILIEAISNKIKGEKD*
Ga0180300_100039516	3300014886	Marine Sediment	LSLTEIIEALQDFGIFIVIILLAYVVYKAAILLEAMSDKIKAEKD*
Ga0224496_100416701	3300022204	Sediment	LEAFVKLSLAELMRALQDFGTFIVIILLAYVVYKIATLLEVISNKIKGEKIEI
Ga0224496_103055331	3300022204	Sediment	LTLTELMRALQDFGIFVVIILLAYVVYRIAILVEVMSKKIQGEKNGA
Ga0224511_102555851	3300022205	Sediment	LMRALQDFGIFVVIILLAYVVYRIAILVEVMSKKIQGEKNGA
Ga0224506_100179194	3300022221	Sediment	LEAFVKLSLAELMRALQDFGTLIVIILLAYVVYKIATLLEVISNKIKGEKIEI
Ga0212089_101411223	3300022551	Lake Sediment	LKLTLTELMRVLQDFGTFVVIVLLAYAVYRTATLLEVISNKIKGEKD
Ga0209978_100355491	3300024263	Deep Subsurface	LESHALMIGGIVKLSLTELMRVLQDFGTFIVIILLAYVVYKAAILLEAMSDKIKGEKD
Ga0209635_1000448313	3300027888	Marine Sediment	LSLAEIMNALQDFGIFIVIILLAYVVYKAAILLEAMSNKIKGEKD
Ga0209635_100098956	3300027888	Marine Sediment	MSLTEIMNALQDFGTFIVIILLAYVVYKAAILLEAMTNKIKGEKTER
Ga0209635_100479993	3300027888	Marine Sediment	LTLTELMRVLQDFGTFIVIILLAYVVYKAAILIDVLGKKIKGEKE
Ga0209635_100756153	3300027888	Marine Sediment	LTLTELMRVLQDFGIFIIIILLAYVVYKISLLIEEISKKIKEKD
Ga0209635_100876864	3300027888	Marine Sediment	LTLTELMRALQDFGIFIVIILLAYVVYRIAILVEVMSKKIQGEKNEA
Ga0209635_102382582	3300027888	Marine Sediment	LTLTELILVLQDFGIFIIIILLAYVVYKISILIEEISKKIKEKD
Ga0209635_106399852	3300027888	Marine Sediment	MLRITGKDRRFTDLTLTELMRALQDFGIFIVIILLAYVVYKVGILFEVLSKKITGEKD
Ga0209635_107055922	3300027888	Marine Sediment	LTLTELMRVLQDFGIFIIIILLAYVVYKISILIEEISKKIKEKD
Ga0209635_111406522	3300027888	Marine Sediment	MRVLQDFGTFIVIILLAYVVYKAAILIDVLGKKIKGEKD
Ga0209636_1000035316	3300027893	Marine Sediment	MFAKLSLTELMRVLQDLGVFIVVILIAYVVYKIATLLEVISTKIKGEKT
Ga0209636_100134723	3300027893	Marine Sediment	MRVLEDFGTFIVIILLAYVVYRIATLLEVITSKIKGEKTRI
Ga0209636_100140321	3300027893	Marine Sediment	MIGGFVKLTLTELMRVLQDFGIFVVVILLAYVVYKVGTMIEAITNKIKEKD
Ga0209636_100556972	3300027893	Marine Sediment	VKLSLTEIMRAIQDFATFIVIVLLAYVVYRTATLLEAIGNKIRGEKTEL
Ga0209636_100645132	3300027893	Marine Sediment	MRALQDFGTFIVIILLAYVVYKAAILVEAMSDRIKGEKD
Ga0209636_101207731	3300027893	Marine Sediment	MIGGIGKLSLTEIMRALQDFGTFIVIILLAYVVYKAAILLEAMSNKIKGEKN
Ga0209636_101839342	3300027893	Marine Sediment	MRALQDFGTFIVIILLAYVVYKAAILLEAMSNRIKGEKD
Ga0209636_102687533	3300027893	Marine Sediment	MRVLQDFGIFIIIILLAYVVYKISLLIEEISKKIKEKD
Ga0209636_103813302	3300027893	Marine Sediment	LTLTELMRVLEDFGTFIVIILLAYVVYRIATLLEVITSKIKGEKTKI
Ga0209636_106413941	3300027893	Marine Sediment	MKLSLAEIMNALQDFGIFIVIILLAYVVYKAAILLEAMSNKIKGEKD
Ga0209636_107271432	3300027893	Marine Sediment	LTLTEIMRALKDFGTFIVIILLAYVVYKAAILLEAMSNRIKGEKD
Ga0209636_109787472	3300027893	Marine Sediment	MSLTEIMNALQDFGIFIVIILLAYVVYKAGILLEAMSNKIKGEKN
Ga0209636_111040422	3300027893	Marine Sediment	ELTLTELMRVLQDFGTFIVIILLAYVVYKAAILIDVLGKKIKGEKE
Ga0209427_100086503	3300027901	Marine Sediment	MNALQDFGIFIVIILLAYVVYKAAILLEAMSNKIKGEKD
Ga0209427_101173171	3300027901	Marine Sediment	MRVLQDFGTFIVIILLAYVVYKAAILIDVLGKKIKGEKE
(restricted) Ga0315308_10289753	3300031587	Sediment	EIMRVLEDFGVFVVIILLAYVVYKVGVLVEAITNKIKGGKD
(restricted) Ga0315308_11269711	3300031587	Sediment	LTLSEIMRVLEDFGVFVVIILLAYVVYKVGVLVEVITNKIKGGKD
(restricted) Ga0315308_11498452	3300031587	Sediment	LTLSEIMRILEDFGVFVVIILLAYVVYKVGALVEVITNKIKGGKD
(restricted) Ga0315308_12043462	3300031587	Sediment	LTLTELMQVLQDLGIFVVIILVAYVVYKIGILIEVISNKIKGEKD
(restricted) Ga0315308_12901622	3300031587	Sediment	LEAFEKLSLTELIRVLQDFGTFVVIVLLAYVVYKISMLLEVISNKIKGEQTEFQNDKAVK
(restricted) Ga0315307_10046807	3300031593	Sediment	MRVLQDFGTFVVIVLLAYAVYRTATLLEVISNKIKGEKD
(restricted) Ga0315307_10504612	3300031593	Sediment	VKLTLSEIMRVLEDFGVFVVIILLAYVVYKVGVLVEVITNKIKGGKD
(restricted) Ga0315307_12247131	3300031593	Sediment	MRALQDLGIFIVIILLAYVVYRIGILVEVISDKIKGEKK
(restricted) Ga0315309_10034868	3300031604	Sediment	MIGGVYELTLTETIRALQDIGTFVVIILLAYVVYKIATLLEVISNKIKGEKTKI
(restricted) Ga0315309_10094724	3300031604	Sediment	LTEIVRVLQDLGAFIVIILLAYVVYKIGNLIEVISQKIKGEKD
(restricted) Ga0315309_10138582	3300031604	Sediment	LTLAELVRILQDFGIFVVVILLAYVVYKIGILIEVITNKIKGEKD
(restricted) Ga0315309_10309323	3300031604	Sediment	LAELVRILQDFGIFVVVILLAYVVYKIGILIEVISDKIKGEKD
(restricted) Ga0315309_11796422	3300031604	Sediment	MLQDLGIFVVIILVAYVVYRIGILIEVISNKIKGEKD
(restricted) Ga0315309_12461841	3300031604	Sediment	LTLSEIMRILEDFGVFVVIILLAYVVYKVGVLVEVITNKIKGGKD
(restricted) Ga0315309_12771362	3300031604	Sediment	MRVLEDFGVFVVIILLAYVVYKVGVLVEAITNKIKGGKD
(restricted) Ga0315306_1000001157	3300031806	Sediment	VKLSLTEIVRVLEDFGTFVVIVLLAYVVYRIATLLEVISNKIKGEKD
(restricted) Ga0315306_1000007215	3300031806	Sediment	MRKLTLSEIMRVLEDFGVFVVIILLAYVVYKVGVLVEVITNKIKGGKD
(restricted) Ga0315306_100447812	3300031806	Sediment	LTLTEIVRVLQDLGAFIVIILLAYVVYKIGNLIEVISQKIKGEKD
(restricted) Ga0315306_102108981	3300031806	Sediment	MQVLQDLGIFVVIILVAYVVYKIGILIEVISNKIKGEKD
(restricted) Ga0315306_102638632	3300031806	Sediment	MQKLTLSEIMRILEDFGVFVVIILLAYVVYKVGALVEVITNKI
(restricted) Ga0315310_100753736	3300031876	Sediment	MRVLQDLGIFVVIILVAYVVYRIGILIEVISNKIKGEKD
(restricted) Ga0315310_102822132	3300031876	Sediment	LKLSLTEIMRILEDFGTFVVIVLLAYVVYRIATLLEVISNKIKGEKD
(restricted) Ga0315310_102989241	3300031876	Sediment	LSLTELTRVLQDFGTFVVIILLAYVVYKIATLLEVISNKIKGERI
(restricted) Ga0315310_103210221	3300031876	Sediment	LKLTLTELMRVLQDFGTFVVIVLLAYAVYRTATLLEVISNKI
(restricted) Ga0315314_100001496	3300031877	Sediment	MMFGGIKDLTLTELMRLLQDFGIFIVIVLLAYVVYKIGILIEVIGKKVKEERD
(restricted) Ga0315314_1000023275	3300031877	Sediment	MRVLQDLGIFVVIILVAYVVYRIGTLIEVISNKIKGEKD
(restricted) Ga0315314_10043173	3300031877	Sediment	MFGGIRDLTLTELMRLLQDFGIFIVIVLLAYVVYKIGILIEVIGKKVKEEKN
(restricted) Ga0315312_10561092	3300031898	Sediment	KSRANDWRCLLKLTLTELMRVLQDFGTFVVIVLLAYAVYRTATLLEVISNKIKGEKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters