Metagenome / Metatranscriptome Family F091254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091254
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIF
Number of Associated Samples	57
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.80 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	89.72 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (89.720 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (95.327 % of family members)
Environment Ontology (ENVO)	Unclassified (95.327 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.065 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.67% β-sheet: 0.00% Coil/Unstructured: 16.33%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00533	BRCT	64.49
PF03120	DNA_ligase_OB	17.76
PF14520	HHH_5	14.02
PF00701	DHDPS	1.87
PF06804	Lipoprotein_18	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	17.76
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	3.74
COG3317	Outer membrane beta-barrel protein assembly factor BamC	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
All Organisms	root	All Organisms	10.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
cellular organisms	root	All Organisms → cellular organisms	10.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	2.80 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	2.80 %
endosymbiont of Bathymodiolus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
unclassified Candidatus Thioglobus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus	1.87 %
Candidatus Thioglobus autotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → Candidatus Thioglobus autotrophicus	0.93 %
endosymbiont of Bathymodiolus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.72 %
Candidatus Thioglobus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp.	1.87 %
Candidatus Thioglobus autotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → Candidatus Thioglobus autotrophicus	0.93 %
endosymbiont of Bathymodiolus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009027\|Ga0102957_1194263	Not Available	727	Open in IMG/M
3300016729\|Ga0182056_1391989	Not Available	887	Open in IMG/M
3300016735\|Ga0182074_1407778	Not Available	810	Open in IMG/M
3300016741\|Ga0182079_1171295	Not Available	515	Open in IMG/M
3300016758\|Ga0182070_1428535	Not Available	1216	Open in IMG/M
3300016771\|Ga0182082_1228625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4003	Open in IMG/M
3300017818\|Ga0181565_10306517	Not Available	1065	Open in IMG/M
3300017818\|Ga0181565_10765455	Not Available	609	Open in IMG/M
3300017818\|Ga0181565_10919105	Not Available	545	Open in IMG/M
3300017818\|Ga0181565_11030094	Not Available	508	Open in IMG/M
3300017949\|Ga0181584_10631552	Not Available	646	Open in IMG/M
3300017949\|Ga0181584_10752862	Not Available	579	Open in IMG/M
3300017956\|Ga0181580_10865517	Not Available	565	Open in IMG/M
3300017957\|Ga0181571_10552703	Not Available	699	Open in IMG/M
3300017957\|Ga0181571_10768531	Not Available	573	Open in IMG/M
3300017957\|Ga0181571_10776846	Not Available	569	Open in IMG/M
3300017958\|Ga0181582_10911162	Not Available	516	Open in IMG/M
3300017964\|Ga0181589_10443409	Not Available	848	Open in IMG/M
3300017964\|Ga0181589_10613322	Not Available	691	Open in IMG/M
3300017964\|Ga0181589_10955742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp.	523	Open in IMG/M
3300017967\|Ga0181590_10639491	Not Available	723	Open in IMG/M
3300017968\|Ga0181587_10840225	Not Available	571	Open in IMG/M
3300017969\|Ga0181585_10074249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	2598	Open in IMG/M
3300017969\|Ga0181585_10250085	Not Available	1250	Open in IMG/M
3300017985\|Ga0181576_10706700	Not Available	602	Open in IMG/M
3300017985\|Ga0181576_10755061	Not Available	578	Open in IMG/M
3300017986\|Ga0181569_10722835	Not Available	657	Open in IMG/M
3300017986\|Ga0181569_10990646	Not Available	543	Open in IMG/M
3300018049\|Ga0181572_10315132	Not Available	991	Open in IMG/M
3300018049\|Ga0181572_10576374	Not Available	686	Open in IMG/M
3300018049\|Ga0181572_10594527	Not Available	673	Open in IMG/M
3300018049\|Ga0181572_10848250	Not Available	543	Open in IMG/M
3300018418\|Ga0181567_10635242	Not Available	687	Open in IMG/M
3300018418\|Ga0181567_11061577	Not Available	503	Open in IMG/M
3300018420\|Ga0181563_10413462	Not Available	768	Open in IMG/M
3300018421\|Ga0181592_10032457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4232	Open in IMG/M
3300018421\|Ga0181592_10647093	Not Available	712	Open in IMG/M
3300018421\|Ga0181592_10911367	Not Available	571	Open in IMG/M
3300018424\|Ga0181591_10490313	Not Available	898	Open in IMG/M
3300018424\|Ga0181591_10765818	Not Available	673	Open in IMG/M
3300018424\|Ga0181591_11037812	Not Available	555	Open in IMG/M
3300018426\|Ga0181566_10033546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → Candidatus Thioglobus autotrophicus	4020	Open in IMG/M
3300018426\|Ga0181566_10103330	Not Available	2167	Open in IMG/M
3300018426\|Ga0181566_10207383	Not Available	1448	Open in IMG/M
3300018426\|Ga0181566_10286465	Not Available	1194	Open in IMG/M
3300018426\|Ga0181566_10956113	Not Available	578	Open in IMG/M
3300018426\|Ga0181566_11217528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp.	500	Open in IMG/M
3300018428\|Ga0181568_11287621	Not Available	546	Open in IMG/M
3300019262\|Ga0182066_1156592	Not Available	699	Open in IMG/M
3300019266\|Ga0182061_1137995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1624	Open in IMG/M
3300019272\|Ga0182059_1183800	Not Available	842	Open in IMG/M
3300019276\|Ga0182067_1092371	Not Available	1161	Open in IMG/M
3300019277\|Ga0182081_1193726	Not Available	957	Open in IMG/M
3300019280\|Ga0182068_1263316	Not Available	1146	Open in IMG/M
3300020177\|Ga0181596_10418419	Not Available	504	Open in IMG/M
3300020189\|Ga0181578_10197092	Not Available	1008	Open in IMG/M
3300020189\|Ga0181578_10312682	Not Available	719	Open in IMG/M
3300020189\|Ga0181578_10329350	Not Available	692	Open in IMG/M
3300020194\|Ga0181597_10370619	Not Available	613	Open in IMG/M
3300020207\|Ga0181570_10139435	Not Available	1336	Open in IMG/M
3300020207\|Ga0181570_10217715	Not Available	1000	Open in IMG/M
3300020207\|Ga0181570_10253167	Not Available	904	Open in IMG/M
3300020207\|Ga0181570_10331818	Not Available	751	Open in IMG/M
3300020207\|Ga0181570_10503919	Not Available	555	Open in IMG/M
3300021356\|Ga0213858_10156051	Not Available	1114	Open in IMG/M
3300021356\|Ga0213858_10320969	Not Available	737	Open in IMG/M
3300021364\|Ga0213859_10208736	Not Available	903	Open in IMG/M
3300021368\|Ga0213860_10107163	Not Available	1222	Open in IMG/M
3300022922\|Ga0255779_1269655	Not Available	673	Open in IMG/M
3300022927\|Ga0255769_10025435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4082	Open in IMG/M
3300022934\|Ga0255781_10335908	Not Available	668	Open in IMG/M
3300022939\|Ga0255754_10127863	Not Available	1353	Open in IMG/M
3300023081\|Ga0255764_10233842	Not Available	884	Open in IMG/M
3300023084\|Ga0255778_10165863	Not Available	1142	Open in IMG/M
3300023084\|Ga0255778_10222049	Not Available	923	Open in IMG/M
3300023084\|Ga0255778_10330190	Not Available	687	Open in IMG/M
3300023087\|Ga0255774_10205703	Not Available	1015	Open in IMG/M
3300023087\|Ga0255774_10389647	Not Available	631	Open in IMG/M
3300023087\|Ga0255774_10429287	Not Available	585	Open in IMG/M
3300023087\|Ga0255774_10497453	Not Available	521	Open in IMG/M
3300023105\|Ga0255782_10018976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4144	Open in IMG/M
3300023105\|Ga0255782_10241803	Not Available	872	Open in IMG/M
3300023105\|Ga0255782_10498304	Not Available	521	Open in IMG/M
3300023108\|Ga0255784_10030604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3376	Open in IMG/M
3300023108\|Ga0255784_10229134	Not Available	962	Open in IMG/M
3300023108\|Ga0255784_10326036	Not Available	755	Open in IMG/M
3300023108\|Ga0255784_10337394	Not Available	737	Open in IMG/M
3300023110\|Ga0255743_10283374	Not Available	864	Open in IMG/M
3300023110\|Ga0255743_10326045	Not Available	784	Open in IMG/M
3300023116\|Ga0255751_10290737	Not Available	858	Open in IMG/M
3300023116\|Ga0255751_10313235	Not Available	813	Open in IMG/M
3300023117\|Ga0255757_10149512	Not Available	1306	Open in IMG/M
3300023119\|Ga0255762_10023895	Not Available	4051	Open in IMG/M
3300023119\|Ga0255762_10416186	Not Available	657	Open in IMG/M
3300023170\|Ga0255761_10206620	Not Available	1101	Open in IMG/M
3300023172\|Ga0255766_10019913	Not Available	4882	Open in IMG/M
3300023172\|Ga0255766_10405888	Not Available	656	Open in IMG/M
3300023173\|Ga0255776_10042326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3600	Open in IMG/M
3300023175\|Ga0255777_10156585	Not Available	1407	Open in IMG/M
3300023175\|Ga0255777_10205428	Not Available	1178	Open in IMG/M
3300023175\|Ga0255777_10265203	Not Available	990	Open in IMG/M
3300023175\|Ga0255777_10271155	Not Available	975	Open in IMG/M
3300023176\|Ga0255772_10275305	Not Available	906	Open in IMG/M
3300023178\|Ga0255759_10194176	Not Available	1345	Open in IMG/M
3300023178\|Ga0255759_10574248	Not Available	647	Open in IMG/M
3300023180\|Ga0255768_10374120	Not Available	766	Open in IMG/M
3300023180\|Ga0255768_10442623	Not Available	675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.07%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.93%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	95.33%
Coastal	Environmental → Aquatic → Marine → Coastal	3.74%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	95.33%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	95.33%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.74%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300016729	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101402AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016735	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071406BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016741	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071410CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016758	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071403BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017985	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019262	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101412AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019266	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101407AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019272	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101405AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019276	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101413AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019277	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019280	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071401AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020177	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)	Environmental	Open in IMG/M
3300020189	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071401CT metaG (spades assembly)	Environmental	Open in IMG/M
3300020194	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)	Environmental	Open in IMG/M
3300020207	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental	Open in IMG/M
3300022922	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG	Environmental	Open in IMG/M
3300022927	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG	Environmental	Open in IMG/M
3300022934	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG	Environmental	Open in IMG/M
3300022939	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG	Environmental	Open in IMG/M
3300023081	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023087	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023108	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG	Environmental	Open in IMG/M
3300023110	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023117	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG	Environmental	Open in IMG/M
3300023119	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG	Environmental	Open in IMG/M
3300023170	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300023173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental	Open in IMG/M
3300023178	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0102957_11942631	3300009027	Pond Water	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQ
Ga0182056_13919891	3300016729	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFY
Ga0182074_14077781	3300016735	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFID
Ga0182079_11712952	3300016741	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDY
Ga0182070_14285352	3300016758	Salt Marsh	VKASDLINEQKKFLTEKLRIDFNDLASECEKILSKKIDSSQIDKVLSIFI
Ga0182082_12286251	3300016771	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKALSIFIDYHPFTNLV
Ga0181565_103065171	3300017818	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQIDKVLSIFI
Ga0181565_107654552	3300017818	Salt Marsh	MTANDLINEQKKFLTEKLRVDFNELSKECEKILSKEKDSI
Ga0181565_109191051	3300017818	Salt Marsh	MKASDLINEQKKFLTEKLRIDFDDLALECEKILSKKNDPNLIDKTLSIFIDYHPFTNLVY
Ga0181565_110300941	3300017818	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKVLSI
Ga0181584_106315522	3300017949	Salt Marsh	MKASDLINEQKKFLTEKLRVDFNDLASECEKILSKKIDSIQ
Ga0181584_107528622	3300017949	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQID
Ga0181580_108655172	3300017956	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDK
Ga0181571_105527031	3300017957	Salt Marsh	MRASDLINEQKKFLTEKLRVDFYELSKECEKILSKNNDPN
Ga0181571_107685311	3300017957	Salt Marsh	MRASDLINEQKKFLTEKLRVDFNELSKECEKILSKNNDLNLIDKTLSIFIDYHPFTNL
Ga0181571_107768462	3300017957	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKK
Ga0181582_109111621	3300017958	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFDDLASECEKILSKKK
Ga0181589_104434091	3300017964	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKK
Ga0181589_106133221	3300017964	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0181589_109557422	3300017964	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIFI
Ga0181590_106394912	3300017967	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDKVLSIFIDYHP
Ga0181587_108402252	3300017968	Salt Marsh	MRATDLINEQKKFLTEKLRVDFYELSKECEKILSKEKDSSQID
Ga0181585_100742493	3300017969	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQ
Ga0181585_102500852	3300017969	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECKKILSKKKDLTQID
Ga0181576_107067002	3300017985	Salt Marsh	MKASDLINEQKKFLTEKLRVDFHDLASECEKILSKKIDSSQIDKVLSIFIDYHPFT
Ga0181576_107550612	3300017985	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSKEKDSIQIDKVLSIFIDYHP
Ga0181569_107228351	3300017986	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSSQIDKVLSIFIDYHPFTNL
Ga0181569_109906461	3300017986	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDALASECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0181572_103151321	3300018049	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDGLASECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0181572_105763741	3300018049	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKI
Ga0181572_105945271	3300018049	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQIDKVLSIFIDYHPFTNLV
Ga0181572_108482502	3300018049	Salt Marsh	MKASDLINEQKKFLTEKLRVDFYDLASECEKILSK
Ga0181567_106352421	3300018418	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDS
Ga0181567_110615771	3300018418	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLS
Ga0181563_104134621	3300018420	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDELSKECEKILSKKIDSSQIDKVLSIFIDYHPF
Ga0181592_100324571	3300018421	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDYHPF
Ga0181592_106470931	3300018421	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKKNDSSQI
Ga0181592_109113672	3300018421	Salt Marsh	MKASDLINQQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQID
Ga0181591_104903132	3300018424	Salt Marsh	MKASDLINEQKKFLTEKLRVDFYDLASECEKILSKKIDSSQIDKVLSIFIDYHP
Ga0181591_107658181	3300018424	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKID
Ga0181591_110378122	3300018424	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSS
Ga0181566_100335464	3300018426	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSIQI
Ga0181566_101033301	3300018426	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSKEKDSIQIDKVLSIFIDYHPFTNLVY
Ga0181566_102073831	3300018426	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFI
Ga0181566_102864652	3300018426	Salt Marsh	MRASDLINQQKKFLTEKLRVDFYELSKECEKILSKN
Ga0181566_109561131	3300018426	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSGQIDKVLSIFIDYH
Ga0181566_112175281	3300018426	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIF
Ga0181568_112876211	3300018428	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKK
Ga0182066_11565922	3300019262	Salt Marsh	MRASDLIDEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFIDYHP
Ga0182061_11379951	3300019266	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKV
Ga0182059_11838002	3300019272	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFNELSKECQKILSKNNDSNQID
Ga0182067_10923712	3300019276	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDKVLSIF
Ga0182081_11937262	3300019277	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQIDKVLSIFIDY
Ga0182068_12633162	3300019280	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQIDKVLSIFID
Ga0181596_104184191	3300020177	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILLRKYDS
Ga0181578_101970921	3300020189	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFIDY
Ga0181578_103126822	3300020189	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQI
Ga0181578_103293502	3300020189	Salt Marsh	MKASYLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQ
Ga0181597_103706192	3300020194	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILLRKY
Ga0181570_101394351	3300020207	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKKNDSSQIDKVLSIFIDYHPF
Ga0181570_102177151	3300020207	Salt Marsh	MKASYLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVL
Ga0181570_102531672	3300020207	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSKEKDSIQIDKVLSIFIDY
Ga0181570_103318181	3300020207	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSTQ
Ga0181570_105039192	3300020207	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVL
Ga0213858_101560511	3300021356	Seawater	MRASDLINEQKKFLTEKLRVDFDNLASECEKILLKKNDSSQID
Ga0213858_103209691	3300021356	Seawater	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDNVLSIFI
Ga0213859_102087361	3300021364	Seawater	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSK
Ga0213860_101071631	3300021368	Seawater	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIF
Ga0255779_12696551	3300022922	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQ
Ga0255769_100254354	3300022927	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQID
Ga0255781_103359082	3300022934	Salt Marsh	MRATDLISEQKKFLTEKLRVDFADLASECKKILSKKKDLTQ
Ga0255754_101278632	3300022939	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDNLASECEKILSKEKDSIQID
Ga0255764_102338421	3300023081	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0255778_101658631	3300023084	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSQKKYSIQIDKVLSIFIDYHPFTNLV
Ga0255778_102220492	3300023084	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFNELSKECQKILSKNNDSNQIDKVLS
Ga0255778_103301901	3300023084	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDALASECKKILSKKKDLTQIDKVLS
Ga0255774_102057031	3300023087	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDRVLSIFIDYHP
Ga0255774_103896471	3300023087	Salt Marsh	MRASDLINEQKKFLTEKLRVDFYELSKECEKILSKEKDPIQ
Ga0255774_104292871	3300023087	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDELASECEKILSKKKDSI
Ga0255774_104974531	3300023087	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDLTQIDKVLSIFIDYHPFTN
Ga0255782_100189764	3300023105	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSI
Ga0255782_102418032	3300023105	Salt Marsh	MRASDLINEQKKFLTEKLRVDFNDLSKECEKILSKEK
Ga0255782_104983041	3300023105	Salt Marsh	MKASDLINEQKEFLTEKLRVDFNDLASECEKILSKKK
Ga0255784_100306044	3300023108	Salt Marsh	MRATDLINEQKKFLTEKLRVDFHELSKECEKILSQKKDSIQIDKVLSIFIDYHPFANL
Ga0255784_102291342	3300023108	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKVLSIFIDYHPFTNLVYLID
Ga0255784_103260361	3300023108	Salt Marsh	MRASDLINEQKKFLTEKLRVDFAELSKECEKILSKNNDSNLIDKVLSI
Ga0255784_103373941	3300023108	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDLTQIDKVLSIFI
Ga0255743_102833741	3300023110	Salt Marsh	MRASDLINEQKKFLTEKLRVDFAELSKECEKILSKNNDSNLIDKVLSIFIDYHPFTNL
Ga0255743_103260451	3300023110	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSQ
Ga0255751_102907372	3300023116	Salt Marsh	MRASDLINEQKKFLTEKLRVDFYELSKECEKILSKNSDSNLIDKTLSIFIDYHPFTNLV
Ga0255751_103132351	3300023116	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDNLASECEKILSKEKDSIQIDKVLSIFIDYHPFTN
Ga0255757_101495121	3300023117	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDYHPFANLVY
Ga0255762_100238954	3300023119	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFDDLASECEKILLRK
Ga0255762_104161862	3300023119	Salt Marsh	MRASDLIKEQKKFLTEKLRVDFDDLASECEKILLKKIDSSEIDKVLSIFID
Ga0255761_102066202	3300023170	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKKND
Ga0255766_100199135	3300023172	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDYHPFA
Ga0255766_104058881	3300023172	Salt Marsh	MRASDLINEQKNFLTEKLRIDFGDLASECGKILSQKKDSIQIDKVLSIFIDYH
Ga0255776_100423264	3300023173	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILLRKYDSSQIDKVLSIFIDYHPFTNLVY
Ga0255777_101565852	3300023175	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKI
Ga0255777_102054281	3300023175	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDS
Ga0255777_102652032	3300023175	Salt Marsh	MKASDLINEQKEFLTEKLRVDFNDLASECEKILSKKKDSIQIDKVLSIF
Ga0255777_102711551	3300023175	Salt Marsh	MKASYLINEQKKFLTEKLRVDFDDLASECEKILSIKID
Ga0255772_102753052	3300023176	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDPIQI
Ga0255759_101941762	3300023178	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKVLSIFIDY
Ga0255759_105742481	3300023178	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSGQIDKVLSIF
Ga0255768_103741201	3300023180	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDNLASECEKILSKEKDSIQ
Ga0255768_104426231	3300023180	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences