Metagenome / Metatranscriptome Family F091341

Basic Information
Family ID	F091341
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	49 residues
Representative Sequence	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG
Number of Associated Samples	101
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (42.991 % of family members)
Environment Ontology (ENVO)	Unclassified (56.075 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (50.467 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.74% β-sheet: 0.00% Coil/Unstructured: 59.26%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04002	RadC	41.12
PF06067	DUF932	1.87
PF00563	EAL	0.93
PF05193	Peptidase_M16_C	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	41.12
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.93
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.93
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.93
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.93

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	11.21%
Engineered	Engineered	1.87%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	46.73%
Terrestrial	Environmental → Terrestrial	40.19%
Plants	Host-Associated → Plants	11.21%
Wastewater	Engineered → Wastewater	0.93%
Bioremediation	Engineered → Bioremediation	0.93%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	44.86%
Soil	Environmental → Terrestrial → Soil	28.97%
Floodplain	Environmental → Terrestrial → Floodplain	11.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.93%
Metal	Engineered → Bioremediation → Metal	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	44.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.56%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.61%
Sand	Environmental → Terrestrial → Soil → Sand	4.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.93%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	44.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	42.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.67%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.87%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.93%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009448	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009795	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011395	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012113	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT100_2	Environmental	Open in IMG/M
3300012140	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT690_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012161	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT300_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014862	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da	Environmental	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300014866	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT890_16_10D	Environmental	Open in IMG/M
3300014868	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT830_16_10D	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015253	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT590_16_10D	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026111	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034114	Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063356_1019748512	3300004463	Arabidopsis Thaliana Rhizosphere	VSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQGVQQ
Ga0070664_1009416922	3300005564	Corn Rhizosphere	VSQKQRDGDQPRVLTGIRAGRTADKRVEVVTDVKFFEQR
Ga0099795_105363321	3300007788	Vadose Zone Soil	VSQEQRDREQPWVLAGRQAGHTADEHIEVVTDVEFFEQRMQQPSRQRQTARAFG*
Ga0099828_114465021	3300009089	Vadose Zone Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0099827_112113322	3300009090	Vadose Zone Soil	VSQEQRDREQPWVLAGGQAGHAADEHVEVVTDVKFFEQGVQQLTRQHETGRAFG*
Ga0111539_107660303	3300009094	Populus Rhizosphere	VSQEQRDGEQPWVLAGGLAGHTADEHVEVVADMEFFEQRMQQTSRQDKTACAFGQCP
Ga0111539_122804321	3300009094	Populus Rhizosphere	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQASRQRKTGRAFG*
Ga0111538_122119511	3300009156	Populus Rhizosphere	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0105248_107224322	3300009177	Switchgrass Rhizosphere	VSQEQRDGEQRWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQHKAAGALG*
Ga0114940_103632091	3300009448	Groundwater	VPQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0105347_10800311	3300009609	Soil	VSQEQRDREQPWVLAGGLAGHTADEHVEVVTDVEFFEQRMQQPSRQRKTARAFG*
Ga0105340_12739571	3300009610	Soil	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQHKAARAFG*
Ga0105252_100607931	3300009678	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0105059_10508801	3300009795	Groundwater Sand	MAQQQRDRDESGVLTRTRAGHTTDEHVEVVADVEFFE*
Ga0105080_10418402	3300009797	Groundwater Sand	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTR*
Ga0105075_10320131	3300009799	Groundwater Sand	VSQEQRDREQPWVLAGRQTGHTADEHVEVVADVEFFEQRVQQPSRQRQTARAFGQST
Ga0105081_10761991	3300009806	Groundwater Sand	VSQEQRDREQPWVLAGRRAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0105061_10165512	3300009807	Groundwater Sand	VSQEQRNGEQPWVLAGGQTGHRPDEHVEVVTDVKFFEQGVQQLTRQREAARAIG*
Ga0126313_111373231	3300009840	Serpentine Soil	VSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSRQREAGCAFGQRPKVVKAPLSPP
Ga0131077_110584771	3300009873	Wastewater	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0126308_106982131	3300010040	Serpentine Soil	VSQEQRDREQPWVLAGGQAGHTTDEHVEVVADVEFFEQCV*
Ga0151490_13507142	3300011107	Soil	VSQERRDGEQPWVLAGGQAGHTADEHVEVVADVEFFE*
Ga0137315_10500711	3300011395	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFE
Ga0137333_10402622	3300011413	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFG*
Ga0137442_11179141	3300011414	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0137325_10777151	3300011415	Soil	VSQEQRDGEQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARPFG*
Ga0137326_10540172	3300011417	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVHQLTRQREAARAFG*
Ga0137314_11784471	3300011420	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC*
Ga0137436_10723092	3300011423	Soil	VSQEQRDREQPWVLAGWQVGHPADEHVEVVAYVEFFEQGMKQAPRQRKTVRAFGQ
Ga0137436_11710412	3300011423	Soil	GQAGNTADEDVEVVTDVKFFEQRMQQPSRQRKTGRAFG*
Ga0137448_11598372	3300011427	Soil	VSQEQRDREQPWVLAGGQVGHTADKHVEVVTDVKFFEQGVQQLTRQHEAARAFG*
Ga0137456_10485711	3300011428	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQPTRQREAARAFG*
Ga0137455_10507611	3300011429	Soil	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI*
Ga0137428_12281611	3300011432	Soil	VSQEQRDGEQPWVLAGGLAGHTADEYVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0137443_11558351	3300011433	Soil	VSQEQRDREQPWELAGRQAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0137426_10694953	3300011435	Soil	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQR
Ga0137426_12612911	3300011435	Soil	QPWVLAGGLAGHTADEHVEVVADVEFFEQRLQQPSRQRKTARAFG*
Ga0137458_10331553	3300011436	Soil	VSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQPAGQRKTARAFG*
Ga0137432_11403842	3300011439	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQLKTARAFG*
Ga0137433_11093221	3300011440	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEER
Ga0137452_11294282	3300011441	Soil	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC*
Ga0137437_10766472	3300011442	Soil	VSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC*
Ga0137463_11563122	3300011444	Soil	VSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0137427_102434932	3300011445	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFE*
Ga0137421_11786782	3300012039	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQHLARQR
Ga0137461_10131872	3300012040	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVQQLTR*
Ga0137389_110904611	3300012096	Vadose Zone Soil	VSQEQRDREQPWVLAGGQAGHAADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0137328_10256541	3300012113	Soil	VSQEQRDREQPWVLAGGQARHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0137351_10645582	3300012140	Soil	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQCMQQPARQREAASAFCQCTKV
Ga0137349_10462561	3300012160	Soil	VSQKQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPAR
Ga0137336_10381292	3300012161	Soil	VSQEQRDREQPWVLAGGQVGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0137319_10727102	3300012167	Soil	VSQEQRDGQQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQSS*
Ga0137434_10095941	3300012225	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQ
Ga0137447_10434851	3300012226	Soil	VSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0137465_10809471	3300012231	Soil	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0157285_103608841	3300012897	Soil	VSQEQRDGEQPWVLAGGLAGHTPDEHVEVVADVEFFEQRMQQPPRKDKAVGAFG
Ga0157299_103408072	3300012899	Soil	VSQKQRDGDQPRVLTGRRVGRTADKRVEVVTDVKFFEQHLEQRTTP
Ga0157298_101155182	3300012913	Soil	VSQKQRDGEQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTGRAFD*
Ga0137419_105188891	3300012925	Vadose Zone Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLT
Ga0164241_106139131	3300012943	Soil	VSQEQRDGEQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0164300_105694011	3300012951	Soil	VSQEQCDREQPWVLAGPQAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0164300_110679491	3300012951	Soil	VSQKQRDGDQPRVLTGGRVGRTADKRVEVVTDVKF
Ga0075311_11462202	3300014259	Natural And Restored Wetlands	VSQEQRNGEQPWVLAGGQTGHRPDEHVEVVADVEFFEQRVQQPGRPRETVRALG*
Ga0157380_122531401	3300014326	Switchgrass Rhizosphere	VSQEQRDREQPWVLAGGLADHTADEHVEVVADVEFFEQRMQ
Ga0180096_10396991	3300014862	Soil	HDREQPWELAGREAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0180078_10241382	3300014865	Soil	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPPRKDKAAGAFG*
Ga0180090_10561962	3300014866	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRPREAARAFG*
Ga0180088_10985641	3300014868	Soil	EQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0180064_10542832	3300014876	Soil	VSQEQRDCEQPWVLAGGLAGHTADEHVEVVADMEFFEQRMQQPSRQRKTGRAFG*
Ga0180074_10761492	3300014877	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRLQQPSRQRKTARAFG*
Ga0180065_10705391	3300014878	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTGRAFG*
Ga0180082_10166052	3300014880	Soil	VSQEQRDREQPWVLAGRLAGHRADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0180094_11459212	3300014881	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0180069_11622292	3300014882	Soil	VSQEQRDREQPWVLAGGQVGHTADEHVEVVTDVKFFEQGVQQPTRQREAARAFG*
Ga0157376_109719021	3300014969	Miscanthus Rhizosphere	VSQEQRDGQQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQHKAARAFGKCTKVIEAA
Ga0167647_10341022	3300015199	Glacier Forefield Soil	VSQEQRDREQPWVLAGRQMGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0173480_110693412	3300015200	Soil	QPWVLAGRLAGHTADEHVEVVADVEFFEHRMQQPSRQRKTGRAFG*
Ga0180081_10221141	3300015253	Soil	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAASAFG*
Ga0132257_1026505092	3300015373	Arabidopsis Rhizosphere	VSQKQRDGDQPRVLTGRRAGGTADKRVEVVTDVKFFEQRLEQRATP
Ga0132255_1017249752	3300015374	Arabidopsis Rhizosphere	AGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0184626_102667612	3300018053	Groundwater Sediment	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG
Ga0184623_101852171	3300018056	Groundwater Sediment	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQ
Ga0210379_102118311	3300021081	Groundwater Sediment	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCV
Ga0207690_109548332	3300025932	Corn Rhizosphere	VSQEQRDGEQPWVLAGGLAGHTADEDVEVVADVELFEQGMQQPSRQHKAV
Ga0207708_107261301	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG
Ga0208291_10198823	3300026111	Natural And Restored Wetlands	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFF
Ga0207698_112033361	3300026142	Corn Rhizosphere	VSQEQRDGEQPWVLAATQAGHTADERVEVVADVEFFEQR
Ga0307312_109586491	3300028828	Soil	VSQEQGDREQPWVLAGGQVGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG
Ga0247827_107616872	3300028889	Soil	VSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQGVQ
Ga0310886_101350173	3300031562	Soil	VSHEERDDEQPWVLAARCVHHRADELVEVVADVKFLEQGVQQRTR
Ga0310886_108610961	3300031562	Soil	VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFF
Ga0310900_106026342	3300031908	Soil	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKT
Ga0310903_101214643	3300032000	Soil	VSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQ
Ga0364928_0154730_439_561	3300033813	Sediment	VSQEQGDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQ
Ga0364937_063725_271_435	3300034113	Sediment	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQRKAARAFG
Ga0364938_007440_1067_1231	3300034114	Sediment	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARTFG
Ga0364945_0059682_471_635	3300034115	Sediment	VSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREATRAFG
Ga0364927_0070741_81_203	3300034148	Sediment	VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0364929_0009653_205_369	3300034149	Sediment	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC
Ga0364929_0139025_461_583	3300034149	Sediment	VSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0364935_0154445_19_132	3300034151	Sediment	LAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG
Ga0364940_0261112_271_393	3300034164	Sediment	VSQKQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0370495_0172649_204_368	3300034257	Untreated Peat Soil	VSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSGPRKTARALG
Ga0364943_0073563_71_193	3300034354	Sediment	VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0364941_085731_496_609	3300034417	Sediment	VSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFE
Ga0364923_0189651_2_148	3300034690	Sediment	VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREA
Ga0373917_0082727_393_533	3300034692	Sediment Slurry	VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091341

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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