NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091498

Metagenome / Metatranscriptome Family F091498

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091498
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 42 residues
Representative Sequence VLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTV
Number of Associated Samples 96
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 42.06 %
% of genes from short scaffolds (< 2000 bps) 38.32 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (61.682 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(27.103 % of family members)
Environment Ontology (ENVO) Unclassified
(71.028 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(72.897 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 78.57%    Coil/Unstructured: 21.43%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF10030DUF2272 0.93



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.68 %
All OrganismsrootAll Organisms38.32 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003393|JGI25909J50240_1030981All Organisms → Viruses → Predicted Viral1174Open in IMG/M
3300004793|Ga0007760_10032475All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1477Open in IMG/M
3300005581|Ga0049081_10298578All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage555Open in IMG/M
3300007214|Ga0103959_1036095All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2730Open in IMG/M
3300007622|Ga0102863_1019113All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1924Open in IMG/M
3300008116|Ga0114350_1160454All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage611Open in IMG/M
3300008450|Ga0114880_1009649All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4808Open in IMG/M
3300009158|Ga0114977_10033935All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3195Open in IMG/M
3300009164|Ga0114975_10036337All Organisms → Viruses → Predicted Viral2936Open in IMG/M
3300009183|Ga0114974_10712862All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage544Open in IMG/M
3300009184|Ga0114976_10296358All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage866Open in IMG/M
3300011009|Ga0129318_10111765All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage794Open in IMG/M
3300012702|Ga0157596_1129217All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1352Open in IMG/M
3300012708|Ga0157595_1184392All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1176Open in IMG/M
3300012712|Ga0157598_1223540All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1202Open in IMG/M
3300012716|Ga0157605_1060237All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage748Open in IMG/M
3300012726|Ga0157597_1211598Not Available1218Open in IMG/M
3300012726|Ga0157597_1277318All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage583Open in IMG/M
3300012764|Ga0157624_1101587All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1167Open in IMG/M
3300012764|Ga0157624_1188646Not Available581Open in IMG/M
3300012779|Ga0138284_1342609All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1092Open in IMG/M
3300013372|Ga0177922_10521181All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage522Open in IMG/M
3300017701|Ga0181364_1050957All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage649Open in IMG/M
3300017701|Ga0181364_1061447All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage581Open in IMG/M
3300017736|Ga0181365_1055959All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage982Open in IMG/M
3300017747|Ga0181352_1161991All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage587Open in IMG/M
3300017754|Ga0181344_1119566Not Available759Open in IMG/M
3300020151|Ga0211736_10755024All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage535Open in IMG/M
3300020162|Ga0211735_10916279All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1654Open in IMG/M
3300020550|Ga0208600_1045094All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage668Open in IMG/M
3300022198|Ga0196905_1179023All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage537Open in IMG/M
3300024483|Ga0255224_1107593All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage584Open in IMG/M
3300024560|Ga0256306_1062972All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage890Open in IMG/M
3300024569|Ga0255243_1088676All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage765Open in IMG/M
3300027732|Ga0209442_1111962All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1087Open in IMG/M
3300027743|Ga0209593_10083261All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1192Open in IMG/M
3300027759|Ga0209296_1407568All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage507Open in IMG/M
3300027763|Ga0209088_10116748All Organisms → Viruses → Predicted Viral1209Open in IMG/M
3300027974|Ga0209299_1078441All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1322Open in IMG/M
(restricted) 3300028044|Ga0247838_1172104All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage803Open in IMG/M
3300033981|Ga0334982_0394184All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage630Open in IMG/M
3300034023|Ga0335021_0594936All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage550Open in IMG/M
3300034066|Ga0335019_0326639Not Available956Open in IMG/M
3300034105|Ga0335035_0273591All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1007Open in IMG/M
3300034119|Ga0335054_0235856All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1093Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater27.10%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake18.69%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake17.76%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater7.48%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment5.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment3.74%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.74%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.80%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.87%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.87%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.87%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.93%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.93%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.93%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.93%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002278Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003411Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SDEnvironmentalOpen in IMG/M
3300003493Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300004793Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006863Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNAEnvironmentalOpen in IMG/M
3300007214Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projectsEnvironmentalOpen in IMG/M
3300007622Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300011009Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNAEnvironmentalOpen in IMG/M
3300012702Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES114 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012706Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES159 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012708Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES113 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012712Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES121 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012714Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES125 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012716Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES130 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012722Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES163 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012725Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES137 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012726Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES115 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012730Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES126 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012758Freshwater microbial communities from Lake Simoncouche, Canada - S_130626_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012759Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES158 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012764Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES155 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012768Freshwater microbial communities from Lake Montjoie, Canada - M_130710_M_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012772Freshwater microbial communities from Lake Simoncouche, Canada - S_130826_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012779Freshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012781Freshwater microbial communities from Lake Simoncouche, Canada - S_130712_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300015243Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES148 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020550Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300024483Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024512Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0hEnvironmentalOpen in IMG/M
3300024537Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024560Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024569Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024860Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027193Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)EnvironmentalOpen in IMG/M
3300027492Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8dEnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027656Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027689Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027743Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027972Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027974Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028044 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15mEnvironmentalOpen in IMG/M
3300028112Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029268 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19mEnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034108Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157EnvironmentalOpen in IMG/M
3300034119Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J29590_10602433300002278FreshwaterQLIMSILAVIPNGYIVGEVERPTVTTIGASTMLISDIRVSTYYEQTI*
B570J29032_10955207533300002408FreshwaterVISVLAVIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTI*
JGI25909J50240_103098143300003393Freshwater LakeVISVLAVIPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI*
JGI25911J50253_10001419183300003411Freshwater LakeISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
JGI25923J51411_108423023300003493Freshwater LakeMSVLAVIPTGYVVSSVERPTVSQVGASTLLIADVRVSTYYTQTA*
Ga0065166_1034246613300004112Freshwater LakeAVIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0007760_1003247543300004793Freshwater LakeIEQLIISVLAVIPTGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI*
Ga0068876_1067908623300005527Freshwater LakePAGYIVSSVERPTVTQVGAATLLIADVRVSTYYQRTI*
Ga0049081_1029857813300005581Freshwater LenticPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI*
Ga0078894_1126115013300005662Freshwater LakeAVIPVGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTV*
Ga0075459_109300113300006863AqueousVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTV*
Ga0103959_103609513300007214Freshwater LakeGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0102863_101911313300007622EstuarineEQLIMSVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0102859_114352913300007708EstuarineYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0105745_118512713300007972Estuary WaterSVLAVIPSGYIVSSVERPTVQQVGASTLLIADVRVSTYYTQTA*
Ga0114350_116045423300008116Freshwater, PlanktonSLDNIEQLIISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0114876_122811323300008448Freshwater LakeLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI*
Ga0114880_100964983300008450Freshwater LakeYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0114977_1003393513300009158Freshwater LakePVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0114978_1003758513300009159Freshwater LakePVGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTV*
Ga0114975_1003633713300009164Freshwater LakeGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0105097_1053342513300009169Freshwater SedimentTMSVLKVIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0105096_1032655233300009170Freshwater SedimentIISVLAVIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0114974_1071286213300009183Freshwater LakeTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0114976_1029635813300009184Freshwater LakeEQLIISVLAVIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0129318_1011176513300011009Freshwater To Marine Saline GradientNIEQLIISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI*
Ga0157596_102852913300012702FreshwaterPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTI*
Ga0157596_112921743300012702FreshwaterIISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI*
Ga0157627_113531213300012706FreshwaterSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157595_118439243300012708FreshwaterPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157598_122354043300012712FreshwaterVIPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157601_118123623300012714FreshwaterAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTV*
Ga0157605_106023733300012716FreshwaterDNIEQLLISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157605_108933943300012716FreshwaterSVLAVIPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157630_125336533300012722FreshwaterAGYIVSSVERPAVTQVGASTLLIADVRVSTYYTRTI*
Ga0157610_117887713300012725FreshwaterIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157597_121159843300012726FreshwaterPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYQRTI*
Ga0157597_127731813300012726FreshwaterQLVISVLAVIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTV*
Ga0157602_106533643300012730FreshwaterVIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYQRTI*
Ga0138285_107601323300012758Freshwater LakeIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0157626_111589533300012759FreshwaterVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI*
Ga0157624_110158743300012764FreshwaterIPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0157624_118864623300012764FreshwaterNIEQLVISVLAVIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYQRTI*
Ga0138276_104142813300012768Freshwater LakeIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI*
Ga0138287_110264913300012772Freshwater LakePTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA*
Ga0138287_114622613300012772Freshwater LakeIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0138284_126877413300012779Freshwater LakeGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI*
Ga0138284_134260913300012779Freshwater LakeQLIMRVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTT*
Ga0138286_104663333300012781Freshwater LakeVLAVIPVGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTI*
Ga0138286_117787933300012781Freshwater LakeVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0170791_1526844213300013295FreshwaterVLAVIPNGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI*
Ga0177922_1052118123300013372FreshwaterASLDNIEQLVISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV*
Ga0180041_15354323300015243FreshwaterVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI*
Ga0181364_105095723300017701Freshwater LakeNIEQLVISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0181364_106144713300017701Freshwater LakeIISVLAVIPTGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI
Ga0181365_105595913300017736Freshwater LakeNIEQLVISVLAVIPSGYIVSSVERPTVQQVGASTLLIADVRVSTYYTRTI
Ga0181352_116199113300017747Freshwater LakeQLIISVLAVIPTGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI
Ga0181344_111956613300017754Freshwater LakeNIEQLVISVLAVIPAGYIVSSVERPTVTQVGAATLLIADVRVSTYYQRTI
Ga0181356_117915133300017761Freshwater LakeIPTDYMVSPVERPTVTTVGASTLLSVDVRVSTYYTRPD
Ga0181343_119333123300017766Freshwater LakeGYIVGSVERPTVTQVGASTLLIADVRVSTYYTRTI
Ga0181358_104038353300017774Freshwater LakeAVIPNGYIVGSVERPTVTQVGASTLLIADVRVSTYYTRTI
Ga0211736_1075502423300020151FreshwaterVISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0211735_1091627913300020162FreshwaterISVLAVIPTGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI
Ga0208600_104509433300020550FreshwaterVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0196905_117902323300022198AqueousSLDNIEQLVISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI
Ga0181351_115182833300022407Freshwater LakeAVIPTGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0255224_110759323300024483FreshwaterGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0255186_105937913300024512FreshwaterSVLAVIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0255225_105336133300024537FreshwaterVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0256306_106297233300024560FreshwaterKDKPTSRPVITTVAMISPYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0255243_108867633300024569FreshwaterIEQLIISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0256344_110588613300024860FreshwaterMSVLAVIPVGYVVSVVERPTVTQVGASTLLIADVRVSTYYTQTT
Ga0208800_104343813300027193EstuarineVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTT
Ga0255093_105093513300027492FreshwaterLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0208974_103069213300027608Freshwater LenticLAVIPNGYVVSSVERPTVSQVGASTLLIADVRVSTYYTQTA
Ga0209357_101509663300027656Freshwater LakeMSVLAVIPTGYVVSSVERPTVSQVGASTLLIADVRVSTYYTQTA
Ga0209551_119905823300027689Freshwater LakeLVISVLAVIPVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209442_111196213300027732Freshwater LakeAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0209087_119684433300027734Freshwater LakeGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209593_1008326143300027743Freshwater SedimentLIISVLAVIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209296_105939353300027759Freshwater LakeLIISVLAVIPSGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209296_140756823300027759Freshwater LakeIEQLIMSVLAAIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0209088_1011674843300027763Freshwater LakeAVIPVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209768_1008329213300027772Freshwater LakeISVLAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209500_1033516823300027782Freshwater LakePVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209079_1032476413300027972Freshwater SedimentAVIPAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0209299_107844113300027974Freshwater LakeDNIEQLIISVLAVIPNGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTI
Ga0247723_113687923300028025Deep Subsurface SedimentGYVVSSVERPTVSQVGASTLLIADVRVSTYYTQTA
(restricted) Ga0247838_117210433300028044FreshwaterDNIEQLVISVLAVIPVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0256335_117746623300028112FreshwaterVIPVGYVVSVVERPTVTQVGASTLLIADVRVSTYYTQTT
(restricted) Ga0247842_1035781613300029268FreshwaterIISVLAVIPVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0315278_1064271113300031997SedimentIMSVLAAIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0315278_1217001113300031997SedimentVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0315289_1133973613300032046SedimentGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0315295_1157653723300032156SedimentSVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0315276_1059328343300032177SedimentAAIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0315273_1220980633300032516SedimentTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0334982_0394184_1_1533300033981FreshwaterNIEQLIISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0335021_0594936_391_5493300034023FreshwaterLDNIEQLIISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0334995_0522522_592_7083300034062FreshwaterIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTA
Ga0335019_0326639_3_1523300034066FreshwaterIEQLVISVLAVIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYQRTI
Ga0335027_0498315_1_1113300034101FreshwaterAGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0335035_0273591_867_10073300034105FreshwaterLIISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0335050_0285449_676_7953300034108FreshwaterVIPVGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0335054_0235856_972_10913300034119FreshwaterVIPGGYIVSSVERPTVTTVGASTLLIADVRVSTYYTRTV
Ga0335007_0103087_1984_21093300034283FreshwaterLAVIPAGYIVSSVERPTVTQVGAATLLIADVRVSTYYTRTI
Ga0335007_0441162_684_8003300034283FreshwaterIPAGYIVSSVERPTVTQVGASTLLIADVRVSTYYTRTI


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