Metagenome / Metatranscriptome Family F091508

Basic Information
Family ID	F091508
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	75 residues
Representative Sequence	VKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.42 %
% of genes near scaffold ends (potentially truncated)	37.38 %
% of genes from short scaffolds (< 2000 bps)	78.50 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (50.467 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (42.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.336 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.15% β-sheet: 0.00% Coil/Unstructured: 40.85%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03352	Adenine_glyco	29.91
PF04519	Bactofilin	4.67
PF00691	OmpA	3.74
PF13174	TPR_6	1.87
PF00941	FAD_binding_5	1.87
PF14535	AMP-binding_C_2	0.93
PF04545	Sigma70_r4	0.93
PF01717	Meth_synt_2	0.93
PF01315	Ald_Xan_dh_C	0.93
PF03450	CO_deh_flav_C	0.93
PF00589	Phage_integrase	0.93
PF04963	Sigma54_CBD	0.93
PF02738	MoCoBD_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	29.91
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	4.67
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.93
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
All Organisms	root	All Organisms	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
cellular organisms	root	All Organisms → cellular organisms	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.28 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	6.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	6.54 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	6.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	1.87 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.80 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.80 %
Chitinilyticum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chitinilyticum	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.80 %
Chitinilyticum litopenaei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chitinilyticum → Chitinilyticum litopenaei	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_16992	Not Available	2511	Open in IMG/M
2228664022\|INPgaii200_c1040446	Not Available	1312	Open in IMG/M
3300000443\|F12B_11331768	Not Available	866	Open in IMG/M
3300004009\|Ga0055437_10017404	Not Available	1631	Open in IMG/M
3300004267\|Ga0066396_10013086	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300004281\|Ga0066397_10016831	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300004479\|Ga0062595_101355036	Not Available	645	Open in IMG/M
3300004633\|Ga0066395_10230368	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300004633\|Ga0066395_10264413	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300005183\|Ga0068993_10121107	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300005186\|Ga0066676_10897866	Not Available	595	Open in IMG/M
3300005332\|Ga0066388_100109561	All Organisms → cellular organisms → Bacteria	3252	Open in IMG/M
3300005332\|Ga0066388_102023118	Not Available	1033	Open in IMG/M
3300005332\|Ga0066388_108307822	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300005343\|Ga0070687_100880764	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005434\|Ga0070709_10436274	Not Available	984	Open in IMG/M
3300005436\|Ga0070713_101356790	Not Available	689	Open in IMG/M
3300005446\|Ga0066686_10223119	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300005459\|Ga0068867_102164992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chitinilyticum → Chitinilyticum litopenaei	527	Open in IMG/M
3300005468\|Ga0070707_100603581	All Organisms → cellular organisms → Bacteria → Proteobacteria	1060	Open in IMG/M
3300005549\|Ga0070704_102014326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chitinilyticum → Chitinilyticum litopenaei	536	Open in IMG/M
3300005713\|Ga0066905_100003696	All Organisms → cellular organisms → Bacteria → Proteobacteria	6098	Open in IMG/M
3300005713\|Ga0066905_100417381	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300005764\|Ga0066903_100064919	All Organisms → cellular organisms → Bacteria	4606	Open in IMG/M
3300005764\|Ga0066903_102192070	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300005764\|Ga0066903_105345806	Not Available	678	Open in IMG/M
3300005843\|Ga0068860_101297553	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300006854\|Ga0075425_100026100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6450	Open in IMG/M
3300006871\|Ga0075434_100004002	All Organisms → cellular organisms → Bacteria	13197	Open in IMG/M
3300006904\|Ga0075424_100005673	All Organisms → cellular organisms → Bacteria	11959	Open in IMG/M
3300006914\|Ga0075436_100060099	All Organisms → cellular organisms → Bacteria	2625	Open in IMG/M
3300009162\|Ga0075423_10351423	Not Available	1546	Open in IMG/M
3300009176\|Ga0105242_12633583	Not Available	552	Open in IMG/M
3300009792\|Ga0126374_10041286	All Organisms → cellular organisms → Bacteria	2264	Open in IMG/M
3300009792\|Ga0126374_10079375	Not Available	1788	Open in IMG/M
3300010043\|Ga0126380_10040592	All Organisms → cellular organisms → Bacteria	2439	Open in IMG/M
3300010043\|Ga0126380_11360565	Not Available	621	Open in IMG/M
3300010046\|Ga0126384_10018640	All Organisms → cellular organisms → Bacteria	4449	Open in IMG/M
3300010046\|Ga0126384_10129778	All Organisms → cellular organisms → Bacteria	1911	Open in IMG/M
3300010046\|Ga0126384_11938202	Not Available	562	Open in IMG/M
3300010047\|Ga0126382_10218102	Not Available	1372	Open in IMG/M
3300010048\|Ga0126373_12970381	Not Available	529	Open in IMG/M
3300010336\|Ga0134071_10161381	Not Available	1094	Open in IMG/M
3300010358\|Ga0126370_10541021	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300010359\|Ga0126376_10355378	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300010359\|Ga0126376_10713031	Not Available	967	Open in IMG/M
3300010360\|Ga0126372_12359592	Not Available	582	Open in IMG/M
3300010360\|Ga0126372_13219984	Not Available	507	Open in IMG/M
3300010361\|Ga0126378_10521756	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300010361\|Ga0126378_11301884	Not Available	822	Open in IMG/M
3300010362\|Ga0126377_10801134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1000	Open in IMG/M
3300010366\|Ga0126379_13534758	Not Available	523	Open in IMG/M
3300010376\|Ga0126381_101973013	Not Available	841	Open in IMG/M
3300010376\|Ga0126381_103017838	Not Available	668	Open in IMG/M
3300010398\|Ga0126383_10195176	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300010398\|Ga0126383_11268842	Not Available	827	Open in IMG/M
3300010398\|Ga0126383_12383095	Not Available	614	Open in IMG/M
3300011442\|Ga0137437_1105479	Not Available	966	Open in IMG/M
3300012201\|Ga0137365_10121076	Not Available	1969	Open in IMG/M
3300012202\|Ga0137363_10001892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	12266	Open in IMG/M
3300012204\|Ga0137374_10052885	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4161	Open in IMG/M
3300012207\|Ga0137381_10675575	Not Available	898	Open in IMG/M
3300012353\|Ga0137367_10724651	Not Available	692	Open in IMG/M
3300012354\|Ga0137366_10093346	Not Available	2283	Open in IMG/M
3300012479\|Ga0157348_1003429	Not Available	851	Open in IMG/M
3300012519\|Ga0157352_1020438	Not Available	797	Open in IMG/M
3300012948\|Ga0126375_10412958	Not Available	979	Open in IMG/M
3300012971\|Ga0126369_12131513	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300013297\|Ga0157378_11795942	Not Available	661	Open in IMG/M
3300014883\|Ga0180086_1091521	Not Available	766	Open in IMG/M
3300015359\|Ga0134085_10565904	Not Available	525	Open in IMG/M
3300016357\|Ga0182032_10708285	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300016422\|Ga0182039_10911273	Not Available	785	Open in IMG/M
3300018431\|Ga0066655_10492062	Not Available	812	Open in IMG/M
3300019789\|Ga0137408_1486220	Not Available	1648	Open in IMG/M
3300021333\|Ga0210324_1101170	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1433	Open in IMG/M
3300021560\|Ga0126371_10493828	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300021560\|Ga0126371_11194623	Not Available	897	Open in IMG/M
3300021560\|Ga0126371_11372606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	838	Open in IMG/M
3300025535\|Ga0207423_1010469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1432	Open in IMG/M
3300025549\|Ga0210094_1016125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1171	Open in IMG/M
3300025910\|Ga0207684_10199530	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1726	Open in IMG/M
3300025916\|Ga0207663_10043238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2757	Open in IMG/M
3300025939\|Ga0207665_10858894	Not Available	719	Open in IMG/M
3300026089\|Ga0207648_11885351	Not Available	559	Open in IMG/M
3300026537\|Ga0209157_1171818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300027527\|Ga0209684_1000909	All Organisms → cellular organisms → Bacteria	5370	Open in IMG/M
3300027646\|Ga0209466_1008207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2212	Open in IMG/M
3300028381\|Ga0268264_10478411	Not Available	1211	Open in IMG/M
3300031198\|Ga0307500_10263894	Not Available	536	Open in IMG/M
3300031681\|Ga0318572_10015271	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3746	Open in IMG/M
3300031713\|Ga0318496_10527678	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031719\|Ga0306917_10299329	Not Available	1242	Open in IMG/M
3300031740\|Ga0307468_100797029	Not Available	805	Open in IMG/M
3300031782\|Ga0318552_10104138	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300031834\|Ga0315290_10003886	All Organisms → cellular organisms → Bacteria → Proteobacteria	10752	Open in IMG/M
3300031896\|Ga0318551_10682430	Not Available	595	Open in IMG/M
3300032063\|Ga0318504_10209013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300032076\|Ga0306924_10053109	All Organisms → cellular organisms → Bacteria	4479	Open in IMG/M
3300032174\|Ga0307470_11313953	Not Available	593	Open in IMG/M
3300032205\|Ga0307472_101212484	Not Available	721	Open in IMG/M
3300032205\|Ga0307472_102404501	Not Available	534	Open in IMG/M
3300032770\|Ga0335085_10193355	Not Available	2499	Open in IMG/M
3300032829\|Ga0335070_10041640	All Organisms → cellular organisms → Bacteria	5126	Open in IMG/M
3300033433\|Ga0326726_10002736	All Organisms → cellular organisms → Bacteria → Proteobacteria	16142	Open in IMG/M
3300033433\|Ga0326726_10285490	Not Available	1545	Open in IMG/M
3300033807\|Ga0314866_021021	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.72%
Host-Associated	Host-Associated	10.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.24%
Plants	Host-Associated → Plants	10.28%
Aquatic	Environmental → Aquatic	7.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.54%
Marine	Environmental → Aquatic → Marine	4.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Sediment	Environmental → Aquatic → Sediment	1.87%
Peat	Environmental → Terrestrial → Peat	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.07%
Loam	Environmental → Terrestrial → Soil → Loam	21.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.54%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.87%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.87%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021333	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_02860640	2199352025	Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVVGLMAWQLTGREKRPRRARPENADGHGVHDESSS
INPgaii200_10404463	2228664022	Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVHDESSS
F12B_113317681	3300000443	Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVHDESS*
Ga0055437_100174043	3300004009	Natural And Restored Wetlands	VKRFVSRYVPFLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTQRERGRLSDNPQAERANGRGVHDESAP*
Ga0066396_100130863	3300004267	Tropical Forest Soil	LKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP*
Ga0066397_100168312	3300004281	Tropical Forest Soil	VEALKRFVARYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP*
Ga0062595_1013550361	3300004479	Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARTENANGHGVHDESSS*
Ga0066395_102303682	3300004633	Tropical Forest Soil	VKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0066395_102644132	3300004633	Tropical Forest Soil	VKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGA
Ga0068993_101211071	3300005183	Natural And Restored Wetlands	LAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTQRERGRLSDNPQAERANGRGVHDESAP*
Ga0066676_108978662	3300005186	Soil	GIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRARRARTENANGHGVHDESSS*
Ga0066388_1001095613	3300005332	Tropical Forest Soil	VKRLVARYIPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRERPRRDHSRAERPNGRGMHDESAP*
Ga0066388_1020231183	3300005332	Tropical Forest Soil	EAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0066388_1083078221	3300005332	Tropical Forest Soil	VKRLVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREHAPRDRSRAESANGRGVHDESAP*
Ga0070687_1008807641	3300005343	Switchgrass Rhizosphere	KPRAEWRGSRDPGWSREGGKGRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVHDESSS*
Ga0070709_104362742	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPESADGHGVHDESSS*
Ga0070713_1013567901	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVHDESSS*
Ga0066686_102231193	3300005446	Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRARRARTENANGHGVHDESSS*
Ga0068867_1021649921	3300005459	Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGH
Ga0070707_1006035813	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRAQTENANGHGVHDESSS*
Ga0070704_1020143261	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPESADGHGVHD
Ga0066905_1000036962	3300005713	Tropical Forest Soil	VKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0066905_1004173812	3300005713	Tropical Forest Soil	VEALKRFVARYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPEGANGRGVRDESAP*
Ga0066903_1000649193	3300005764	Tropical Forest Soil	VKRLVARYIPILWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRERPRRDHSRAERPNGRGMHDESAP*
Ga0066903_1021920702	3300005764	Tropical Forest Soil	VKKLVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGPNGHGVRDESAP*
Ga0066903_1053458062	3300005764	Tropical Forest Soil	VEALKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGRDGRPRRPEGANGRGVRDESAP*
Ga0068860_1012975533	3300005843	Switchgrass Rhizosphere	GRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPESADGHGVHDESSS*
Ga0075425_1000261002	3300006854	Populus Rhizosphere	VKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPGANGRGVRDESAP*
Ga0075434_1000040024	3300006871	Populus Rhizosphere	MVVESGHEQSADAPLGGKAAEGDGPTRAGQGEGGVEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPGANGRGVRDESAP*
Ga0075424_1000056735	3300006904	Populus Rhizosphere	MVVESGHEQSADASLGGKAAEGDGPTRAGQGEGGVEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPGANGRGVRDESAP*
Ga0075436_1000600991	3300006914	Populus Rhizosphere	KAAEGDGPTRAGQGEGGVEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPGANGRGVRDESAP*
Ga0075423_103514232	3300009162	Populus Rhizosphere	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPGANGRGVRDESAP*
Ga0105242_126335831	3300009176	Miscanthus Rhizosphere	RFVARYVPTLWLLAVLSLVGWFIWNGDLAGRILLALVIGLMAWQLTGREKRPRRARPESADGHGVHDESSS*
Ga0126374_100412864	3300009792	Tropical Forest Soil	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHSVRDESAP*
Ga0126374_100793752	3300009792	Tropical Forest Soil	VARYIPILWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRERPRRDHSRAERPNGRGMHDESAP*
Ga0126380_100405922	3300010043	Tropical Forest Soil	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0126380_113605652	3300010043	Tropical Forest Soil	EALKRFVARYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPEGANGRGVRDESAP*
Ga0126384_100186403	3300010046	Tropical Forest Soil	VEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0126384_101297781	3300010046	Tropical Forest Soil	LKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRG
Ga0126384_119382022	3300010046	Tropical Forest Soil	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREG
Ga0126382_102181022	3300010047	Tropical Forest Soil	VKRLVARYVPILWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREHAPRDRSRAESANGRGVHDESAP*
Ga0126373_129703811	3300010048	Tropical Forest Soil	VEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGAN
Ga0134071_101613811	3300010336	Grasslands Soil	EGGKGRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARTENANGHGVHDESSS*
Ga0126370_105410212	3300010358	Tropical Forest Soil	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGPNGHGVRDESAP*
Ga0126376_103553781	3300010359	Tropical Forest Soil	VEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGA
Ga0126376_107130312	3300010359	Tropical Forest Soil	VEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRESRPRRREGANGHGVRDESAP*
Ga0126372_123595922	3300010360	Tropical Forest Soil	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRRPRRREGANGHGVRDESAP*
Ga0126372_132199842	3300010360	Tropical Forest Soil	YVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0126378_105217563	3300010361	Tropical Forest Soil	VEAVKKLVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0126378_113018841	3300010361	Tropical Forest Soil	QGEGGVEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0126377_108011343	3300010362	Tropical Forest Soil	LARAGQGEGGVEAVKRLVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRQEGANGHGVRDESAP*
Ga0126379_135347581	3300010366	Tropical Forest Soil	VEAVKRFVSRYVPFLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP*
Ga0126381_1019730131	3300010376	Tropical Forest Soil	KRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGRDGRPRRPEGANGRGVRDESAP*
Ga0126381_1030178381	3300010376	Tropical Forest Soil	VEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRQEGPNGHGVRDESAP*
Ga0126383_101951761	3300010398	Tropical Forest Soil	VEALKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGR
Ga0126383_112688422	3300010398	Tropical Forest Soil	VEAVKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRQEGANGHGVRDESAP*
Ga0126383_123830951	3300010398	Tropical Forest Soil	VARYIPILWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRERPRRDHHSMHDESAP*
Ga0137437_11054791	3300011442	Soil	VKRFASRYVPLLWLLAALSLMGWFVWNGDLAGWILLGLVVGLMAWQLTGREKRARESEGRTENANGRGVRDESAP*
Ga0137365_101210763	3300012201	Vadose Zone Soil	VTQGHQREQEGGKGRRDGRGGIETVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLSGREKRSRHARTENADGRGMHDESSP*
Ga0137363_1000189210	3300012202	Vadose Zone Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGRDKRSRHARTENANGRGVHDESSP*
Ga0137374_100528857	3300012204	Vadose Zone Soil	VTQGHQSEQESGKGRRDGRGGVEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRSRHTRTENANGRGVHDESSP*
Ga0137381_106755752	3300012207	Vadose Zone Soil	VTQGHQREQEGGKGRRDGRGGIETVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLSGREKRSRHPRTENADGRGMHDESSP*
Ga0137367_107246511	3300012353	Vadose Zone Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRSRHTRTENANGRGVHDESSP*
Ga0137366_100933462	3300012354	Vadose Zone Soil	VTQGHQREQEGGKGRRDGRGGIETVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMIWQLSGREKRSRHPRTENADGRGMHDESSP*
Ga0157348_10034291	3300012479	Unplanted Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVVGLMAWQLTGREKRPRRARPDNADGHGVHDESSS*
Ga0157352_10204381	3300012519	Unplanted Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVVGLMAWQLTGREKRPRRARPESADGHGVHDESSS*
Ga0126375_104129581	3300012948	Tropical Forest Soil	VKRLVARYIPILWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRERPRRDRHSMHDESAP*
Ga0126369_121315132	3300012971	Tropical Forest Soil	VEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGH
Ga0157378_117959421	3300013297	Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPE
Ga0180086_10915212	3300014883	Soil	VKRFASRYVPLLWLLAALSLMGWFVWNGDLAGWILLGLVVGLMAWQLTGREKRARESEGRTESANGRGVRDESAP*
Ga0134085_105659041	3300015359	Grasslands Soil	SREGGKGRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARTENANGHGVHDESSS*
Ga0182032_107082851	3300016357	Soil	EGGVGRERSEALKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0182039_109112733	3300016422	Soil	WTGEGGVGRERSEALKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0066655_104920621	3300018431	Grasslands Soil	GRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRARRARTENANGHGVHDESSS
Ga0137408_14862202	3300019789	Vadose Zone Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGRDKRSRHARTENANGRGVHDESSP
Ga0210324_11011702	3300021333	Estuarine	VKRFASRYVPFLWLLAAMSLMGWFIWNGDLAGWILLGLVVGLMAWQLTGREKRARESEGRRESANGRGVRDESAP
Ga0126371_104938282	3300021560	Tropical Forest Soil	VEALKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREGRPRRPEGANGRGVRDESAP
Ga0126371_111946233	3300021560	Tropical Forest Soil	EARAGQGEGGVEAVKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP
Ga0126371_113726061	3300021560	Tropical Forest Soil	VKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP
Ga0207423_10104691	3300025535	Natural And Restored Wetlands	FVSRYVPFLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTQRERGRLSDNPQAERANGRGVHDESAP
Ga0210094_10161252	3300025549	Natural And Restored Wetlands	VKRFVSRYVPFLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTQRERGRLSDNPQAERANGRGVHDESAP
Ga0207684_101995301	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARTENANGHGVHDESSS
Ga0207663_100432386	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	KRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVHDESSS
Ga0207665_108588943	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPESADGHGVHDESSS
Ga0207648_118853511	3300026089	Miscanthus Rhizosphere	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVH
Ga0209157_11718181	3300026537	Soil	RAPGWSREGGKGRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRARRARTENANGHGVHDESSS
Ga0209684_10009095	3300027527	Tropical Forest Soil	VKTFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP
Ga0209466_10082072	3300027646	Tropical Forest Soil	VEALKRFVARYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0268264_104784111	3300028381	Switchgrass Rhizosphere	KPRAEWRGSRDSGWSREGGKGRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPESADGHGVHDESSS
Ga0307500_102638941	3300031198	Soil	PRAEWRGSWDPGWSREGGKGRRDGRGGIEAVKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRRARPENADGHGVHDESSS
Ga0318572_100152717	3300031681	Soil	LKRFVSRYFPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0318496_105276781	3300031713	Soil	LKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGA
Ga0306917_102993291	3300031719	Soil	LWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0307468_1007970292	3300031740	Hardwood Forest Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLVLVVGLMAWQLTGRENRPRHARSENANGHGVHDESSS
Ga0318552_101041381	3300031782	Soil	LKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGR
Ga0315290_100038862	3300031834	Sediment	VKRFASRYVPLLWLLAALSLVGWFIWNGDLAGWILLGLVVGLMAWQLTARDKRARESESRTESANGRGVRDESAP
Ga0318551_106824301	3300031896	Soil	YVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGREGRPRRREGANGHGVRDESAP
Ga0318504_102090131	3300032063	Soil	GRERSEALKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0306924_100531095	3300032076	Soil	LKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILHALVIGLMVWQLTGRDGRPRRPEGANGRGVRDESAP
Ga0307470_113139531	3300032174	Hardwood Forest Soil	VKRLVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLVLVVGLMAWQLTGREKRPRHARRENANGHGVHDESSS
Ga0307472_1012124842	3300032205	Hardwood Forest Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLVLVVGLMAWQLTGRENRARHARSENANGHGVHDESSS
Ga0307472_1024045011	3300032205	Hardwood Forest Soil	VKRFVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGREKRPRHARPENAD
Ga0335085_101933552	3300032770	Soil	VKKLVGRYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLAGRERPRRDHSRAESPNGRGVHDESAP
Ga0335070_100416405	3300032829	Soil	VKRFVSRYVPFLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLTQRERARRSDNPQAETANGRGVHDESAP
Ga0326726_100027365	3300033433	Peat Soil	VKRFVSRYVPFLWLLAVLSLVGWFVWNGDLAGWILLALVIGLMVWQLTQRERARLADNPQAETANGRGVHDESAP
Ga0326726_102854902	3300033433	Peat Soil	VKRFVSRYVPLLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMAWQLTGRERAPRRDNPRTESANGRGVHDESAP
Ga0314866_021021_729_941	3300033807	Peatland	VKKLVARYVPTLWLLAVLSLVGWFIWNGDLAGWILLALVIGLMVWQLAGRERPRRAESPNGRGVHDESAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091508

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign