Metagenome / Metatranscriptome Family F091534

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091534
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	93 residues
Representative Sequence	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAESPIRAADGPDNR
Number of Associated Samples	77
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.50 %
% of genes near scaffold ends (potentially truncated)	33.64 %
% of genes from short scaffolds (< 2000 bps)	97.20 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.393 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (14.019 % of family members)
Environment Ontology (ENVO)	Unclassified (31.776 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.813 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.20% β-sheet: 16.26% Coil/Unstructured: 58.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03061	4HBT	1.87
PF00072	Response_reg	0.93
PF01381	HTH_3	0.93
PF02811	PHP	0.93
PF00561	Abhydrolase_1	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.39 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.39 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.39 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	92.52 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	92.52 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	92.52 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	88.79 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	88.79 %
Unclassified	root	N/A	5.61 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10234456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	853	Open in IMG/M
3300004114\|Ga0062593_100250851	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1462	Open in IMG/M
3300004114\|Ga0062593_101091862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	827	Open in IMG/M
3300004114\|Ga0062593_102026102	Not Available	640	Open in IMG/M
3300004156\|Ga0062589_100134510	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1661	Open in IMG/M
3300004156\|Ga0062589_100492675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1030	Open in IMG/M
3300004156\|Ga0062589_100718692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	890	Open in IMG/M
3300004156\|Ga0062589_101672269	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300004156\|Ga0062589_102224812	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300004157\|Ga0062590_100048460	All Organisms → cellular organisms → Bacteria	2335	Open in IMG/M
3300004157\|Ga0062590_101437929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	688	Open in IMG/M
3300004463\|Ga0063356_100450877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1679	Open in IMG/M
3300004463\|Ga0063356_102236622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	833	Open in IMG/M
3300004463\|Ga0063356_104021939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	633	Open in IMG/M
3300004463\|Ga0063356_104538128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M
3300004463\|Ga0063356_104769362	Not Available	583	Open in IMG/M
3300004480\|Ga0062592_100147050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1570	Open in IMG/M
3300004480\|Ga0062592_100722144	Not Available	870	Open in IMG/M
3300004480\|Ga0062592_100823653	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	826	Open in IMG/M
3300004643\|Ga0062591_100826107	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	858	Open in IMG/M
3300004798\|Ga0058859_11710318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	805	Open in IMG/M
3300005093\|Ga0062594_100415545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1094	Open in IMG/M
3300005343\|Ga0070687_100426693	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	876	Open in IMG/M
3300005347\|Ga0070668_100256074	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1454	Open in IMG/M
3300005356\|Ga0070674_101537665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	599	Open in IMG/M
3300005356\|Ga0070674_102134113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300005365\|Ga0070688_101713144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	515	Open in IMG/M
3300005366\|Ga0070659_101248353	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	658	Open in IMG/M
3300005438\|Ga0070701_10147627	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1351	Open in IMG/M
3300005459\|Ga0068867_102254445	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300005544\|Ga0070686_100649544	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	836	Open in IMG/M
3300005615\|Ga0070702_100985226	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300005615\|Ga0070702_101073429	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	642	Open in IMG/M
3300005615\|Ga0070702_101370251	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300005617\|Ga0068859_101856185	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	665	Open in IMG/M
3300005617\|Ga0068859_102373569	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300005718\|Ga0068866_10778489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	663	Open in IMG/M
3300005719\|Ga0068861_101620173	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300005842\|Ga0068858_101833466	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	599	Open in IMG/M
3300005843\|Ga0068860_101023584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	844	Open in IMG/M
3300005844\|Ga0068862_102212396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300006845\|Ga0075421_100725941	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1152	Open in IMG/M
3300006845\|Ga0075421_101142615	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	872	Open in IMG/M
3300006847\|Ga0075431_100625633	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1059	Open in IMG/M
3300006852\|Ga0075433_11161293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	671	Open in IMG/M
3300006853\|Ga0075420_100946398	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300009094\|Ga0111539_10819889	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1083	Open in IMG/M
3300009094\|Ga0111539_11221251	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	873	Open in IMG/M
3300009100\|Ga0075418_12911125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300009148\|Ga0105243_11312430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300009156\|Ga0111538_11843619	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	761	Open in IMG/M
3300009156\|Ga0111538_12859080	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300009157\|Ga0105092_10468966	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	720	Open in IMG/M
3300009157\|Ga0105092_10693379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300009176\|Ga0105242_11056653	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	823	Open in IMG/M
3300009177\|Ga0105248_11095467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	900	Open in IMG/M
3300009177\|Ga0105248_12240799	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	622	Open in IMG/M
3300009553\|Ga0105249_10149305	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2248	Open in IMG/M
3300009553\|Ga0105249_10168076	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2125	Open in IMG/M
3300009553\|Ga0105249_13154701	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300010047\|Ga0126382_11433684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300010154\|Ga0127503_10308960	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	681	Open in IMG/M
3300010371\|Ga0134125_11282815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	799	Open in IMG/M
3300010397\|Ga0134124_13051297	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300010399\|Ga0134127_10299073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1549	Open in IMG/M
3300010400\|Ga0134122_12001078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300010401\|Ga0134121_11241291	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	747	Open in IMG/M
3300010403\|Ga0134123_10332871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1362	Open in IMG/M
3300010403\|Ga0134123_11677336	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300011119\|Ga0105246_11726839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300012891\|Ga0157305_10124764	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	665	Open in IMG/M
3300013297\|Ga0157378_11760938	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300013306\|Ga0163162_13144598	Not Available	530	Open in IMG/M
3300013308\|Ga0157375_13002106	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300014326\|Ga0157380_11777684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300014968\|Ga0157379_11806261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300015077\|Ga0173483_10447559	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	676	Open in IMG/M
3300015371\|Ga0132258_11920753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1490	Open in IMG/M
3300015374\|Ga0132255_100592585	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1638	Open in IMG/M
3300015374\|Ga0132255_101129664	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1178	Open in IMG/M
3300015374\|Ga0132255_102345733	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	814	Open in IMG/M
3300019356\|Ga0173481_10422683	Not Available	658	Open in IMG/M
3300025961\|Ga0207712_10510763	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1028	Open in IMG/M
3300025961\|Ga0207712_10793630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	832	Open in IMG/M
3300025972\|Ga0207668_10868077	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	802	Open in IMG/M
3300026035\|Ga0207703_11306658	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	698	Open in IMG/M
3300026067\|Ga0207678_10348174	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300026075\|Ga0207708_11059891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	706	Open in IMG/M
3300026075\|Ga0207708_11086060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300026095\|Ga0207676_11719405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300026118\|Ga0207675_100381626	Not Available	1386	Open in IMG/M
3300027614\|Ga0209970_1064356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	676	Open in IMG/M
3300027907\|Ga0207428_11188933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	531	Open in IMG/M
3300027909\|Ga0209382_11022743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	860	Open in IMG/M
3300028592\|Ga0247822_11496982	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	570	Open in IMG/M
3300028889\|Ga0247827_10385928	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	846	Open in IMG/M
3300030336\|Ga0247826_10734959	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	768	Open in IMG/M
3300031547\|Ga0310887_10235179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1015	Open in IMG/M
3300031562\|Ga0310886_10799945	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300031720\|Ga0307469_12421291	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	513	Open in IMG/M
3300031740\|Ga0307468_100378191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1070	Open in IMG/M
3300032003\|Ga0310897_10203099	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	865	Open in IMG/M
3300032013\|Ga0310906_10517937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	810	Open in IMG/M
3300032174\|Ga0307470_11839920	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	513	Open in IMG/M
3300033550\|Ga0247829_10547830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	960	Open in IMG/M
3300033550\|Ga0247829_11230886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300033551\|Ga0247830_10527645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	930	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	51.40%
Environmental	Environmental	48.60%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.47%
Terrestrial	Environmental → Terrestrial	45.79%
Aquatic	Environmental → Aquatic	2.80%
Human	Host-Associated → Human	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.56%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Digestive System	Host-Associated → Human → Digestive System	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.30%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.82%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.28%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	14.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.41%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	6.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_102344562	3300000891	Soil	MQDHHLQLLIRQNLADGRLPINSIPRVWGGPGNGETCDACEGIITKDEFVIEGISLANGRNALQLHSECFHLWELERRAVAETKPPIPAADDGPDDR*
Ga0062593_1002508512	3300004114	Soil	MHQQGLQLIIRQKLRDGTLPYNSIPRAWGGPGHGEMCDACDSTITNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR*
Ga0062593_1010918621	3300004114	Soil	MHQQGLQLMIRQKLLNSALPYNSIPRVWGGPGNGEMCDGCDAIVTKDEWVIEGISLKGGRKPLQLHVECFHLWE
Ga0062593_1020261021	3300004114	Soil	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGNGEMCDACNGIISNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAEPPIPAADGLDNR*
Ga0062589_1001345101	3300004156	Soil	MHQQGLQLMIRQKLLNSALPYNSIPRVWGGPGNGEMCDGCDAIVTKDEWVIEGISLKGGRKPLQLHVACFHLWEIERHAFVAKPEPQSGTMPHDG*
Ga0062589_1004926752	3300004156	Soil	MQDHHLQLLIRQKLADGRLPHNSIPRVWGGPGNGEICDACDGIVPKDEWLIEGIALAGGRKPLQLHTECFHLWEQERHAVVAGPSIPPADGPDNR*
Ga0062589_1007186921	3300004156	Soil	MQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPDLDSRATPEGPDGG*
Ga0062589_1016722692	3300004156	Soil	MHQQGLQLIIRQKLLNRALPYNSIPRVWGGPGNGEMCDGCDAIITKDEWVIEGVSLKGGRKPLQLHVECFHLWEIERHAFVAKPEP
Ga0062589_1022248121	3300004156	Soil	MHQLTLELVIRHKLQTGVLPHNSIPRVWGAPGNGETCDACESIISKDEWVIEGISLAEGRKPLQLHSECFHLWERER
Ga0062590_1000484601	3300004157	Soil	MHEQGLQLIIRQKLLNGTLPYNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGVSLAGGRKPLQVHVACFHLWEIERHSRPVAPAAQP*
Ga0062590_1014379292	3300004157	Soil	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAESPIRAADGPDNR*
Ga0063356_1004508774	3300004463	Arabidopsis Thaliana Rhizosphere	MHQLSLELLVRHKLQTGALPRNSIPRIWGGPGNGETCDACESVVTKDEWVIEGISLAEGRKPLHLHVECFHLWERERRTLVVKTEPRSRAADGGPDGR*
Ga0063356_1022366222	3300004463	Arabidopsis Thaliana Rhizosphere	MHQQSLQLIIRQKLRDGTLPYNSISRVWGGPGNGEACDACDGIVTKDEWVIEGISLAEGRKPLQLHVECFHLWEIERHDMVGKTAPPLRAAGDGPDGP*
Ga0063356_1040219392	3300004463	Arabidopsis Thaliana Rhizosphere	DGTLPYNSIPRVWGGPGNGETCDACDGIITKDEWVIEGISVAAGRKPLQVHVECFHLWEQERHAVVAAPPIRATDAEDAR*
Ga0063356_1045381281	3300004463	Arabidopsis Thaliana Rhizosphere	MHQQGLQLIIRQKLRSGTLPYNSIPRVWGGPGNGETCDACDGIVTKDEWVIEGISLAGGRKPLQLHAECFHLWELERHAVVGAPAPPIRAADDGPNAG*
Ga0063356_1047693621	3300004463	Arabidopsis Thaliana Rhizosphere	DGTLPYNSIPRVWGGPGNGEMCDACNGIISNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAEPPIPAADGLDNR*
Ga0062592_1001470503	3300004480	Soil	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGEMCDACDGLVTKDEWVIEGIALSGGRKPLQLHVECFHLWEIERRSGSVASTAQP*
Ga0062592_1007221441	3300004480	Soil	MHQQGLQLMIRQKLLNSALPYNSIPRVWGGPGNGEMCDGCDAIVTKDEWVIEGISLKGGRKPLQLHVACFH
Ga0062592_1008236532	3300004480	Soil	MQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGIITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0062591_1008261073	3300004643	Soil	EATMHQQGLQLIIRQKLRDGRLPYNSIPRVWGGPGNGEACDACDGIITKDEWVIEGISVAAGRKPLQVHVECFHLWEQERHAVVAAPPIRATDAEDAR*
Ga0058859_117103182	3300004798	Host-Associated	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHTVVAESPIRATDGPDNR*
Ga0062594_1004155451	3300005093	Soil	MQQHSLQLLIRQKLQNGTLPYDSISRVWGGPGNGETCDACELIVTKDEWVMEGISLAGGRKPLQLHTECFHLWEQERRSRPVEPPA*
Ga0070687_1004266932	3300005343	Switchgrass Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACDSTITNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR*
Ga0070668_1002560743	3300005347	Switchgrass Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGETCDACDVLVTKDEWVIEGIALAGGRKPLQLHVECFHLWEIERRRGPVAPTDQP*
Ga0070674_1015376651	3300005356	Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERRSGPGAPTA
Ga0070674_1021341131	3300005356	Miscanthus Rhizosphere	MHQLTLELVIRHKLQTGVLPHNSIPRVWGGPGNGETCDACESVITKDEWVIEGISLAEGRKPLQLHAECFHLWERERHTETKTSLHLKT
Ga0070688_1017131441	3300005365	Switchgrass Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERRSGPGAPTAQR*
Ga0070659_1012483532	3300005366	Corn Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGEMCDGCDAIITKDEWVIEGVSLKGGRKPLQLHVECFHLWEIERHAFVAKPEPQSGTMPHDG*
Ga0070701_101476272	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERRSGPEAPTAQR*
Ga0068867_1022544451	3300005459	Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERRSGP
Ga0070686_1006495441	3300005544	Switchgrass Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACDSTITNDEWVIEVIALTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR*
Ga0070702_1009852262	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGDGEMCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERHAFVAKPDLDSRATPEGPDGG*
Ga0070702_1010734291	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHAVVASPPGRGRRP*
Ga0070702_1013702511	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MHQLTLELVIRHKLQTGVLPHNSIPRVWGAPGNGETCDACESIISKDEWVIEGISLAEGRKPLQLHSECFHLWERERHTETKTSLHL
Ga0068859_1018561851	3300005617	Switchgrass Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGQKPLQLHSECFHLWEIERHAFVAKPEPHSGTVQAGPPAG*
Ga0068859_1023735691	3300005617	Switchgrass Rhizosphere	MHQQGLQLIIRQKLLNRALPYNSIPRVWGGPGNGEMCDGCDAIITKDEWVIEGVSLKGGRKPLQLHVECFHLWEIERHAFVAKPEPQSGTMPHDG*
Ga0068866_107784892	3300005718	Miscanthus Rhizosphere	LVIRQKLKNGTLPYNSIPRVWGGPGNGEMCDACDGLVTKDEWVIEGIALSGGRKPLQLHVECFHLWEIERRSGSVASTAQP*
Ga0068861_1016201732	3300005719	Switchgrass Rhizosphere	MTDVALRHRHREVVMQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWE
Ga0068858_1018334661	3300005842	Switchgrass Rhizosphere	MHQLTLELVIRHKLQTGVLPHNSIPRVWGGPGNGETCDACESVITKDEWVIEGISLAEGRKPLQLHSECFHLWERERHTETK
Ga0068860_1010235842	3300005843	Switchgrass Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR*
Ga0068862_1022123961	3300005844	Switchgrass Rhizosphere	PHSLRLLIRQKLENGRLPLNNIPRVWGRPGHGELCDACDGIITKDALVIEGMSLAEHRQLLRLHVDCFYVWEQERSMGRAEPPPQR*
Ga0075421_1007259413	3300006845	Populus Rhizosphere	MHQQGLQLIIRQKLQNGTLPYNSIPRVWGGPGNGEACDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLRPTLQP*
Ga0075421_1011426152	3300006845	Populus Rhizosphere	MQEHHLQLLIRHKLETGVLPMNSIPRVWGGPGSGEICDACEVPITKDQWVIEGISLAGGRKPLQLHAECFHLWERERHAIEGATALSPLPLRQAPAPTASA*
Ga0075431_1006256333	3300006847	Populus Rhizosphere	MHQQGLQLIIRQKLQNGTLPYNSIPRVWGGPGNGEACDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLTPTLL
Ga0075433_111612932	3300006852	Populus Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERH
Ga0075420_1009463982	3300006853	Populus Rhizosphere	MHQQGLQLIIRQKLQNGTLPYNSIPRVWGGPGNGEACDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLRP
Ga0111539_108198891	3300009094	Populus Rhizosphere	MHQQGLQLIIRQKLQNGTLPYNSIPRVWGGPGNGEACDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLTPTLLP*
Ga0111539_112212511	3300009094	Populus Rhizosphere	QRLADGRLPHNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERHAVVASPPLRAADGGPDGH*
Ga0075418_129111251	3300009100	Populus Rhizosphere	MDFGPARQGSSMHQQGLQLIIRQKLQNGTLPYNSIPRVWGGPGNGEACDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLTPTLQP*
Ga0105243_113124301	3300009148	Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGETCDACDVLVTKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHTVVAESPIRATDGPDNR*
Ga0111538_118436191	3300009156	Populus Rhizosphere	MHQQRLQLIIRHKLQNGTLPYNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHSECFHLWEVERHAVAPKTEPPIRPVQDGPHAG*
Ga0111538_128590802	3300009156	Populus Rhizosphere	MHQQGLQLIIRQKLQNGTLPYNSIPRVWGGPGNGEVCDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLTPTLLP*
Ga0105092_104689661	3300009157	Freshwater Sediment	MQQHSLQLLIRHKLANGTLPTNSIPRVWGGPGNGESCDACEIIITKDEWVIEGISLAEGRKPLQLHVECFHLWERERHAMAPGTRSPAGS*
Ga0105092_106933791	3300009157	Freshwater Sediment	MQQHSLHLLIRHKLANGTLPINSIPRVWGGPGNGEICDACDEVVTKDEWVMEGISLADGRKPLQLHVECFHLWQLERRAVPARPAHVPGT*
Ga0105242_110566531	3300009176	Miscanthus Rhizosphere	MQDHHLQLLIRQRLADGRLPHNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERHTVVAESPIRATDGADNR*
Ga0105248_110954671	3300009177	Switchgrass Rhizosphere	ALRHRHREVVMQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0105248_122407991	3300009177	Switchgrass Rhizosphere	SMPPEATMHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHTVVAESPIRATDGPDNR*
Ga0105249_101493054	3300009553	Switchgrass Rhizosphere	MQDHHLQLLIRQRLADGRLPHNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPIQLHTECFHLWEQERHAVVASPPGRGRRP*
Ga0105249_101680764	3300009553	Switchgrass Rhizosphere	MHQQNLQLIIRQKLLNGTLPYNSIPRVWGGPGNGEMCDACDGIVTKDEWVIEGIALAGGRKPLQLHVECFHLWEQERRVVHAKPTPKP*
Ga0105249_131547011	3300009553	Switchgrass Rhizosphere	MQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSIPKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0126382_114336841	3300010047	Tropical Forest Soil	QNSLQLLIRHKLATGALPLNSIPRVWGGPSNGGSCDACELIVTKDELLTEGISLANGRKPLQLHVECFHLWERERHTVAAEIRAGKAGPDAQ*
Ga0127503_103089602	3300010154	Soil	MQQHSLQLLIRQKLENGTLPLNSIPRVWGGPANGEMCDACEGIITKDEMLIEGISLAGGRNPLQLHVECFHLWEQERHSRPVAPTAQP*
Ga0134125_112828151	3300010371	Terrestrial Soil	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGETCDACDVLVTKDEWVIEGIALAGGRKPLQLHVECFHLWERERRALSGQPGPPLRPTEDGPTVG*
Ga0134124_130512971	3300010397	Terrestrial Soil	VPARGLDGRGLVQPHHLQLPICQKLQTGALPRNRLPRMWGGPGNGETCDACDSIITHDEWVIEGIGLPPDRPPLQLHVECFHLWERERRALSGQPEPTLRPTEDGPTAGWG
Ga0134127_102990733	3300010399	Terrestrial Soil	VNLALSHSVPPEATMHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACDSTITNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR*
Ga0134122_120010781	3300010400	Terrestrial Soil	MHQQGLQLIIRQKLLNGTLPYNSIPRVWGGPGNGEMCDACDGIITKDEWAIEGIALAGGRKPLQLHTECFHLWEQERRVVHVGPASQP*
Ga0134121_112412912	3300010401	Terrestrial Soil	MTDVALRHRHREVVMQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGIITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0134123_103328713	3300010403	Terrestrial Soil	MQDHHLQLLIRQRLADGRLPHNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERHAVVASPPLRAADGGPDGH*
Ga0134123_116773362	3300010403	Terrestrial Soil	KLRDGTLPYNSIPRAWGGPGHGEMCDACDSTITNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR*
Ga0105246_117268391	3300011119	Miscanthus Rhizosphere	LTPGCSMQDHHLQLLIRQRLADGRLPHNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERHAVVASPPLRAADGGPDGH*
Ga0157305_101247641	3300012891	Soil	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGEMCDACDGLVTKDEWVIEGISVAAGRKPLQVHVECFHLWEQERHAVVAAPPIRATDAEDAR*
Ga0157378_117609382	3300013297	Miscanthus Rhizosphere	ASITDVALRHRHREVVMQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0163162_131445981	3300013306	Switchgrass Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRAWGGPGHGEMCDACDSTITNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVASPPLRAADGGPDGH*
Ga0157375_130021062	3300013308	Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0157380_117776842	3300014326	Switchgrass Rhizosphere	RQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHTVVAESPIRATDGPDNR*
Ga0157379_118062611	3300014968	Switchgrass Rhizosphere	VNLALSHSVPPEATMHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHAVVAEPPIPAADGLDNR*
Ga0173483_104475592	3300015077	Soil	MTDVALRHRHREVVMQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0132258_119207533	3300015371	Arabidopsis Rhizosphere	MHQQGLQLIIRQKLLNGTLPYNGIPRVWGGPGNGETCDACDDIVTKDEWVIEGIALAGSRKPLQLHTECFHLWEIERHTFAPKTEPHIRAVNDDGPHTG*
Ga0132255_1005925851	3300015374	Arabidopsis Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGEMCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERRSGPGAPTAQR*
Ga0132255_1011296643	3300015374	Arabidopsis Rhizosphere	MHQQGLQLIIRQKLLNGTLPYNSIPRVWGGPGNGETCDACDGIVTKDEWVIEGIALAGSRKPLQLHTECFHLWEIERHTFAPKTEPHIRAVNDDGPHTG*
Ga0132255_1023457331	3300015374	Arabidopsis Rhizosphere	MTDVALRHRHREVVMQQHSLQLLIRQKLHNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG*
Ga0173481_104226832	3300019356	Soil	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGLGKLCDACGGIITKDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAEPPIPAADGLDNR
Ga0207712_105107632	3300025961	Switchgrass Rhizosphere	MQQHSLQLLIRQKLQNGTLPYDSISRVWGGPGNGETCDACELIVTKDEWVMEGISLAGGRKPLQLHTECFHLWEQERRSRPVEPPA
Ga0207712_107936301	3300025961	Switchgrass Rhizosphere	MHQQNLQLIIRQKLLNGTLPYNSIPRVWGGPGNGEMCDACDGIVTKDEWVIEGIALAGGRKPLQLHVECFHLWEQERRVVHAKPTPKP
Ga0207668_108680771	3300025972	Switchgrass Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGETCDACDVLVTKDEWVIEGIALAGGRKPLQLHVECFHLWEIERRRGPVAPTDQP
Ga0207703_113066581	3300026035	Switchgrass Rhizosphere	MHQQGLQLIIRQKLLNRALPYNSIPRVWGGPGNGEMCDGCDAIITKDEWVIEGVSLKGGRKPLQLHVECFHLWEIERHAFVAKPEPHGGTMPHDG
Ga0207678_103481742	3300026067	Corn Rhizosphere	MHQQGLQLIIRQKLLTGTLPYNSIPRVWGGPGNGEMCDACDGIVTKDEWVIEGIALAGGRKPLQLHVECFHLWEIERRRGPVAPTDQP
Ga0207708_110598913	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	GALPLNSIPRVWGGPGNGETCDACEGIITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGE
Ga0207708_110860601	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHQQGLQLMIRQKLKNGTLPYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIERRSGPEAPTAQR
Ga0207676_117194051	3300026095	Switchgrass Rhizosphere	MTDVALRHRHREVVMQQHSLQLLIRQKLQNGALPLNSIPRVWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKSKLDSRAAPEGPDGG
Ga0207675_1003816262	3300026118	Switchgrass Rhizosphere	MHQQGLQLIIRHKLQNGTLPYNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHVECFHLWEIERRRGPVAPTDQP
Ga0209970_10643562	3300027614	Arabidopsis Thaliana Rhizosphere	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGNGEMCDACNGIISNDEWVIEGIALTGGRKPLQLHTECFHLWEQERHAVVAGPPIRAADGPDSR
Ga0207428_111889331	3300027907	Populus Rhizosphere	MHQLTLELVIRHKLQTGVLPHNSIPRVWGGPGNGETCDACESVITKDEWVIEGISVAEGRKPLQLHAECFHLWERERHTETKISL
Ga0209382_110227431	3300027909	Populus Rhizosphere	MQEHHLQLLIRHKLETGVLPMNSIPRVWGGPGSGEICDACEVPITKDQWVIEGISLAGGRKPLQLHAECFHLWERERHAIEGATALSPLPLRQAPAPTASA
Ga0247822_114969821	3300028592	Soil	DHHLQLLIRQKLADGRLPINSIPRVWGGPGNGETCDACESVITKDEWVIEGISLAEGRKPLQLHVECFHLWERERHTMAGERLTPPSGRPPDARAR
Ga0247827_103859282	3300028889	Soil	MHQQGLQLIIRQKLHNGTLPYNSIPRVWGGPGNGEACDGCDAIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERRMSPVKPTPQQ
Ga0247826_107349592	3300030336	Soil	MQDHHLQLLIRQKLADGRLPINSIPRVWGGPGNGETCDACESVITKDEWVIEGISLAEGRKPLQLHVECFHLWERERHTMAGETKPPIRAVGDGPDDR
Ga0310887_102351792	3300031547	Soil	MHQQGLQLIIRQKLRDGTLPYNSIPRVWGGPGHGEMCDACGGIITKDEWVIEGITLTGGRKPLQLHTECFHLWEQERHTVVAESPIRATDGPDNR
Ga0310886_107999451	3300031562	Soil	MHQEGLQLIIRHKLQNGTLPYNSIPRVWGGPGYGEMCDACDGIITKDEWVIEGIALAGGQKPLQLHSECFHLWEVERHAVAPKTEPPIRPVQDGPHAG
Ga0307469_124212911	3300031720	Hardwood Forest Soil	IIRQKLQNGTLPYNSIPRVWGGPGNGEACDACDGIIPRDEWVIEGIALAGGRKPLQLHVECFHLWQQERGVAHLTPTLQP
Ga0307468_1003781912	3300031740	Hardwood Forest Soil	MHQQGLQLIIRQKLKNGTLPYNSIPRVWGGPGNGEACDACDGIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERHAVNVMARSNIRAAQDGPDGG
Ga0310897_102030992	3300032003	Soil	MQDHHLQLLIRQRLADGRLPHNSIPRVWGGPGNGEMCDACDGIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERHAVVASPPLRAADGGPDGH
Ga0310906_105179371	3300032013	Soil	MHQQGLQLMIRQKLKNGTLSYNSIPRVWGGPGNGELCDACDSVVTKDEWVIEGIALAGGRKPLQLHTECFHLWEIER
Ga0307470_118399201	3300032174	Hardwood Forest Soil	LAPKGRRLTIPTMTQPILRLLIQEKLAAGRLPNNHIARIWGGPGNGETCDACEGSITKDEMLIEGISVAGGRKPLQLHTECFHLWEIERHAFVAKPELDSRAAPEGPDGG
Ga0247829_105478302	3300033550	Soil	MDVDALRLIIRGKLADGRLPLNSIARVWGGPGNGESCNACDGIVTNDEFVIEGISLAGGPRPLQLHVRCFWLWESERRQQLAPQ
Ga0247829_112308862	3300033550	Soil	MHQQGLQLIIRQKLHNGRLPYNSIPRVWGGPGNGEACDGCDAIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERRMSPVKPTPQP
Ga0247830_105276452	3300033551	Soil	MHQQGLQLIIRQKLHNGTLPYNSIPRVWGGPGNGEACDGCDAIITKDEWVIEGIALAGGRKPLQLHTECFHLWEQERRMSPVKPTPQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091534

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences