Metagenome / Metatranscriptome Family F091539

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091539
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	MQSSTPDDVARQLAEEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Number of Associated Samples	72
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.18 %
% of genes near scaffold ends (potentially truncated)	22.43 %
% of genes from short scaffolds (< 2000 bps)	78.50 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.486 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand (28.037 % of family members)
Environment Ontology (ENVO)	Unclassified (34.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (34.579 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.92% β-sheet: 0.00% Coil/Unstructured: 52.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01243	Putative_PNPOx	4.67
PF00196	GerE	2.80
PF08281	Sigma70_r4_2	2.80
PF07883	Cupin_2	2.80
PF02467	Whib	2.80
PF13305	TetR_C_33	1.87
PF00248	Aldo_ket_red	1.87
PF13427	DUF4111	1.87
PF03458	Gly_transporter	1.87
PF13191	AAA_16	0.93
PF03795	YCII	0.93
PF07228	SpoIIE	0.93
PF13180	PDZ_2	0.93
PF02371	Transposase_20	0.93
PF03992	ABM	0.93
PF10081	Abhydrolase_9	0.93
PF13344	Hydrolase_6	0.93
PF01061	ABC2_membrane	0.93
PF03861	ANTAR	0.93
PF13416	SBP_bac_8	0.93
PF03631	Virul_fac_BrkB	0.93
PF00296	Bac_luciferase	0.93
PF04909	Amidohydro_2	0.93
PF04672	Methyltransf_19	0.93
PF00701	DHDPS	0.93
PF07077	DUF1345	0.93
PF03633	Glyco_hydro_65C	0.93
PF01872	RibD_C	0.93
PF00069	Pkinase	0.93
PF08044	DUF1707	0.93
PF07690	MFS_1	0.93
PF01663	Phosphodiest	0.93
PF02148	zf-UBP	0.93
PF13434	Lys_Orn_oxgnase	0.93
PF13023	HD_3	0.93
PF10604	Polyketide_cyc2	0.93
PF14224	DUF4331	0.93
PF14759	Reductase_C	0.93
PF13365	Trypsin_2	0.93
PF13411	MerR_1	0.93
PF07885	Ion_trans_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.74
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	1.87
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.93
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.93
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.93
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.93
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.93
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.47 %
Unclassified	root	N/A	35.51 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.79 %
Unclassified	root	N/A	35.51 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.10 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	4.67 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.87 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.87 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.93 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.93 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.93 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.93 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.93 %
unclassified Nocardiopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → unclassified Nocardiopsis	0.93 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Nocardiopsis sp. CNR-923	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → unclassified Nocardiopsis → Nocardiopsis sp. CNR-923	0.93 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.93 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig62777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	1127	Open in IMG/M
3300000550\|F24TB_12363208	Not Available	548	Open in IMG/M
3300000858\|JGI10213J12805_11407949	Not Available	631	Open in IMG/M
3300000956\|JGI10216J12902_102030420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2410	Open in IMG/M
3300000956\|JGI10216J12902_102357252	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300000956\|JGI10216J12902_110877632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1436	Open in IMG/M
3300003373\|JGI25407J50210_10011031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	2306	Open in IMG/M
3300003373\|JGI25407J50210_10045340	Not Available	1121	Open in IMG/M
3300003373\|JGI25407J50210_10092349	Not Available	749	Open in IMG/M
3300004016\|Ga0058689_10168199	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005186\|Ga0066676_10879966	Not Available	602	Open in IMG/M
3300005436\|Ga0070713_100347104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1376	Open in IMG/M
3300005562\|Ga0058697_10002392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	6184	Open in IMG/M
3300005562\|Ga0058697_10133023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1068	Open in IMG/M
3300005562\|Ga0058697_10346807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	722	Open in IMG/M
3300005713\|Ga0066905_100391605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1124	Open in IMG/M
3300005937\|Ga0081455_10193302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1530	Open in IMG/M
3300006845\|Ga0075421_100137736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3056	Open in IMG/M
3300006845\|Ga0075421_100222286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2327	Open in IMG/M
3300006845\|Ga0075421_100502591	Not Available	1440	Open in IMG/M
3300009100\|Ga0075418_11192720	Not Available	825	Open in IMG/M
3300009799\|Ga0105075_1002953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1303	Open in IMG/M
3300009799\|Ga0105075_1062119	Not Available	508	Open in IMG/M
3300009800\|Ga0105069_1011779	Not Available	766	Open in IMG/M
3300009801\|Ga0105056_1049403	Not Available	587	Open in IMG/M
3300009805\|Ga0105079_1022240	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300009807\|Ga0105061_1018616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	915	Open in IMG/M
3300009809\|Ga0105089_1078497	Not Available	556	Open in IMG/M
3300009811\|Ga0105084_1065713	Not Available	655	Open in IMG/M
3300009815\|Ga0105070_1007672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1726	Open in IMG/M
3300009815\|Ga0105070_1048168	Not Available	786	Open in IMG/M
3300009815\|Ga0105070_1080947	Not Available	626	Open in IMG/M
3300009817\|Ga0105062_1059693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	710	Open in IMG/M
3300009817\|Ga0105062_1124585	Not Available	525	Open in IMG/M
3300009823\|Ga0105078_1050926	Not Available	550	Open in IMG/M
3300009836\|Ga0105068_1024334	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1040	Open in IMG/M
3300009840\|Ga0126313_10083984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2313	Open in IMG/M
3300010145\|Ga0126321_1427419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	891	Open in IMG/M
3300010145\|Ga0126321_1503650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	732	Open in IMG/M
3300010145\|Ga0126321_1517974	Not Available	635	Open in IMG/M
3300010362\|Ga0126377_10000108	All Organisms → cellular organisms → Bacteria	41988	Open in IMG/M
3300010896\|Ga0138111_1132539	Not Available	527	Open in IMG/M
3300012021\|Ga0120192_10009057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → unclassified Nocardiopsis → Nocardiopsis sp. CNR-923	1432	Open in IMG/M
3300012204\|Ga0137374_10826005	Not Available	685	Open in IMG/M
3300012204\|Ga0137374_11206065	Not Available	530	Open in IMG/M
3300012206\|Ga0137380_10002581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15424	Open in IMG/M
3300012206\|Ga0137380_10031264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4907	Open in IMG/M
3300012350\|Ga0137372_10625557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	787	Open in IMG/M
3300012353\|Ga0137367_10069957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2607	Open in IMG/M
3300012355\|Ga0137369_10075116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2849	Open in IMG/M
3300012355\|Ga0137369_10482555	Not Available	879	Open in IMG/M
3300012355\|Ga0137369_10575373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	786	Open in IMG/M
3300012358\|Ga0137368_10016575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7168	Open in IMG/M
3300012358\|Ga0137368_10567629	Not Available	724	Open in IMG/M
3300012359\|Ga0137385_10601516	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300012380\|Ga0134047_1033395	Not Available	640	Open in IMG/M
3300012401\|Ga0134055_1219082	Not Available	543	Open in IMG/M
3300014487\|Ga0182000_10023726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1648	Open in IMG/M
3300014487\|Ga0182000_10030810	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300014487\|Ga0182000_10306929	Not Available	664	Open in IMG/M
3300018052\|Ga0184638_1000500	All Organisms → cellular organisms → Bacteria	11012	Open in IMG/M
3300018052\|Ga0184638_1008261	All Organisms → cellular organisms → Bacteria	3473	Open in IMG/M
3300018052\|Ga0184638_1029432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1974	Open in IMG/M
3300018078\|Ga0184612_10132770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1302	Open in IMG/M
3300021073\|Ga0210378_10000086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40188	Open in IMG/M
3300022534\|Ga0224452_1116260	Not Available	821	Open in IMG/M
3300022694\|Ga0222623_10013914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2960	Open in IMG/M
3300027006\|Ga0209896_1027083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300027056\|Ga0209879_1014432	Not Available	1299	Open in IMG/M
3300027209\|Ga0209875_1008672	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300027209\|Ga0209875_1018305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	825	Open in IMG/M
3300027209\|Ga0209875_1037121	Not Available	586	Open in IMG/M
3300027277\|Ga0209846_1007451	Not Available	1886	Open in IMG/M
3300027277\|Ga0209846_1016799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1213	Open in IMG/M
3300027332\|Ga0209861_1049608	Not Available	619	Open in IMG/M
3300027379\|Ga0209842_1010566	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300027379\|Ga0209842_1023488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1182	Open in IMG/M
3300027511\|Ga0209843_1005319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2968	Open in IMG/M
3300027561\|Ga0209887_1008449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2766	Open in IMG/M
3300027577\|Ga0209874_1033959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1384	Open in IMG/M
3300027718\|Ga0209795_10085478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	912	Open in IMG/M
3300027873\|Ga0209814_10393627	Not Available	609	Open in IMG/M
3300027909\|Ga0209382_10199259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2296	Open in IMG/M
3300027909\|Ga0209382_10785129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1015	Open in IMG/M
3300027909\|Ga0209382_12059837	Not Available	545	Open in IMG/M
3300027952\|Ga0209889_1065353	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300027957\|Ga0209857_1023451	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1169	Open in IMG/M
3300028719\|Ga0307301_10011394	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300028744\|Ga0307318_10026182	All Organisms → cellular organisms → Bacteria	1889	Open in IMG/M
3300028784\|Ga0307282_10127444	Not Available	1196	Open in IMG/M
3300028824\|Ga0307310_10266764	All Organisms → cellular organisms → Bacteria → Terrabacteria group	826	Open in IMG/M
3300028828\|Ga0307312_10276621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1091	Open in IMG/M
3300028878\|Ga0307278_10153708	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1030	Open in IMG/M
3300028878\|Ga0307278_10366090	Not Available	635	Open in IMG/M
3300030510\|Ga0268243_1038759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1005	Open in IMG/M
3300030510\|Ga0268243_1141037	Not Available	579	Open in IMG/M
3300030511\|Ga0268241_10003257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2951	Open in IMG/M
3300030511\|Ga0268241_10167754	Not Available	544	Open in IMG/M
3300030516\|Ga0268255_10126602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	757	Open in IMG/M
3300031548\|Ga0307408_100550844	Not Available	1018	Open in IMG/M
3300031731\|Ga0307405_10116220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1822	Open in IMG/M
3300031901\|Ga0307406_11205637	Not Available	657	Open in IMG/M
3300032159\|Ga0268251_10001192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	7620	Open in IMG/M
3300032159\|Ga0268251_10019461	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300032159\|Ga0268251_10021639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1914	Open in IMG/M
3300032159\|Ga0268251_10204261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	776	Open in IMG/M
3300034172\|Ga0334913_000838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13538	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.64%
Host-Associated	Host-Associated	23.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.29%
Plants	Host-Associated → Plants	23.36%
Aquatic	Environmental → Aquatic	9.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.28%
Phylloplane	Host-Associated → Plants → Phylloplane	8.41%
Sediment	Environmental → Aquatic → Sediment	5.61%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Roots	Host-Associated → Plants → Roots	2.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.45%
Sand	Environmental → Terrestrial → Soil → Sand	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.80%
Loam	Environmental → Terrestrial → Soil → Loam	2.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	28.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.21%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	8.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.80%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.93%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009805	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010896	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_12790260	2124908045	Soil	LRMQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLDPEEGF
F24TB_123632082	3300000550	Soil	MPSPAKDEIARRLAEEARPTLGAEGFSDERIDELAFAFVNDMIGEGEMQFVNWAMAEGPIGLDPEAGI*
JGI10213J12805_114079491	3300000858	Soil	LAEEARPILGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEVGI*
JGI10216J12902_1020304202	3300000956	Soil	MQSHDPGERARLLADETRPLLGADGFSDERIDELASAFVDDRVGEGAAQFVNWARVQGPLGLDPEEGF*
JGI10216J12902_1023572522	3300000956	Soil	MQSHDPGERVRLLADEARPVLGADGFSDERIDELAFAFVDDRVGEGASQFVNWARAQGPIGLDPEEGF*
JGI10216J12902_1108776323	3300000956	Soil	MQSPDDLARRLADQTRPTLGAEGFSDERIDELASAFIDDQIGEGEEQFVNWARAEGPFGIDPEEGF*
JGI25407J50210_100110314	3300003373	Tabebuia Heterophylla Rhizosphere	MQSPDDVARGLAEEARPILGAEGFSDERIDELAFAFVNDHVGEGEAQFVNWALAEGPFGLDPEEGL*
JGI25407J50210_100453402	3300003373	Tabebuia Heterophylla Rhizosphere	MEDASHDAVARQLAEDARPILGAEGFSDERIDELAYAFVNDRVGDDSAQFVNWALAQGPFGLDPEEGL*
JGI25407J50210_100923491	3300003373	Tabebuia Heterophylla Rhizosphere	MQSPDDVARGLAEEARPILGAEGFSDERIDELAFAFVNDHVGEGEAQFVNWALAEGPFGLDP
Ga0058689_101681992	3300004016	Agave	MGSSDREEWLRMQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL*
Ga0066676_108799661	3300005186	Soil	MQSSDPDGVARRLANEARPMLGAEGFSDERIDELAYAFVNDRVGEGGAQFVNWALAEGPIGLDPEEGL*
Ga0070713_1003471042	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSSGAAEAARRLAEEARPTLGAEGFSDERIDELAYAFVDDRIGDGVTQFINWAVAQGPIGLDPEEGF*
Ga0058697_100023925	3300005562	Agave	MQNSAPDDAVRRLAEDARPVLGAQGFSDERIDELAYAFVNDHVGKDSAQFVDWALAEGPFGLDPEEGF*
Ga0058697_101330232	3300005562	Agave	MQSAHDPARQLADHTRPILGAEGFSDERIDELASAFVDDHIGEGEEQFVNWARAEGPFGIDPEEGF*
Ga0058697_103468072	3300005562	Agave	MQGAAPDDVARRLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDRDQFVNWAMAEGPFGLDPEEGF*
Ga0066905_1003916052	3300005713	Tropical Forest Soil	MQSSDPDERARLLADEARPLLGADGFSDERIDELAYAFVNDHIGMGTEQFVNWAHAEGPIGLDPQAGF*
Ga0081455_101933023	3300005937	Tabebuia Heterophylla Rhizosphere	MQSADPDDLARRLADAARPVLGAEGFSDERIDDLADAFVTDRIGEGEAQFVSWARAEGPFGLDPEEGF*
Ga0075421_1001377362	3300006845	Populus Rhizosphere	MQGTDPDDLARRLADEVRPVLGAEGFSDERIDELAYAFVADHIGMGEAQFVNWARAEGPFGIDPEEGF*
Ga0075421_1002222862	3300006845	Populus Rhizosphere	MRRDDAEEAANRLADEVRPVLGAEGYGDERIDELAHAFVHDRIGEGADEFVMWARAEGPIGLDPEEGF*
Ga0075421_1005025913	3300006845	Populus Rhizosphere	MQSSEDLAGQLADRTRPILGAEGFSDERIDELAYAFVDDHIGEGDEQFVNWARAEGPFGIDPEEGF*
Ga0075418_111927202	3300009100	Populus Rhizosphere	MPSPAKDEIARRLAEEARPTLGAEGFSDERIDELAFAFVNDMIGEGETQFVNWAMAEGPIGLDPEAGI*
Ga0105075_10029532	3300009799	Groundwater Sand	DDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPIGLDPEEGF*
Ga0105075_10621191	3300009799	Groundwater Sand	MEDSAQGDIARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL*
Ga0105069_10117792	3300009800	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF*
Ga0105056_10494032	3300009801	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELAFAFVTNRVGEGAQQFVNWALAEGPFGLDPEEGF*
Ga0105079_10222401	3300009805	Groundwater Sand	MQRSDPDEVARLLADEARPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF*
Ga0105061_10186162	3300009807	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVSWAMAEGPFGLDPEAGF*
Ga0105089_10784972	3300009809	Groundwater Sand	MQGAVPDEVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGQGRAQFVNWALSEGPFGLDPEEGF*
Ga0105084_10657131	3300009811	Groundwater Sand	MQSSGPDDVARRLAEEARPILGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF*
Ga0105070_10076723	3300009815	Groundwater Sand	ARLLADEVRPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF*
Ga0105070_10481682	3300009815	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF*
Ga0105070_10809471	3300009815	Groundwater Sand	VARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0105062_10596932	3300009817	Groundwater Sand	MQSSGPDDVARRLAEEARPILGAEGFSDERIDELAFAFVNDHIGEGGAQFVNWALAEGPIGLDPEEGF*
Ga0105062_11245852	3300009817	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHIGEGGAQFVSWAMAEGPFGLDPEAGF*
Ga0105078_10509261	3300009823	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF*
Ga0105068_10243341	3300009836	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF*
Ga0126313_100839842	3300009840	Serpentine Soil	MLALTARGKDRSMQGAAPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF*
Ga0126321_14274192	3300010145	Soil	MQGAAPDDLARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLD
Ga0126321_15036502	3300010145	Soil	MQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLD
Ga0126321_15179741	3300010145	Soil	MDGVADMDGVARRLAEEARPILGAEGFSDQRIDELAYAFVNDRVGEGSTQFVNWAMVEGPVGIDPEEGL*
Ga0126377_100001089	3300010362	Tropical Forest Soil	MQSSDPDERARLLADEARPLLGADGFSDERIDELAYAFVNDHIGRGTEQFVNWAHAEGPIGLDPQAGF*
Ga0138111_11325391	3300010896	Grasslands Soil	MQRSDPDGVARRLADEARPMLGAEGFSDERIDELAYAFVNDRVGEGGAQFVNWALAEGPIGLDPEEGL*
Ga0120192_100090572	3300012021	Terrestrial	MQSSGSDDVARWLADEARPILGAEGFSDERVDELAFAFVNDHIGEGEAQFINWALAEGPFGLDPEEGI*
Ga0137374_108260051	3300012204	Vadose Zone Soil	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEA
Ga0137374_112060652	3300012204	Vadose Zone Soil	MRSFDPDERARLLADEARPLLGADGFSDERIDELASAFVDDRVGEGAAQFVNWARAQGPFGLDPEEGF*
Ga0137380_100025812	3300012206	Vadose Zone Soil	MEVVALRLAEQARPTLGAEGFSDQRIDELAFAFVNDHVGEGEAQFVNWALAEGPIGLDPEEGF*
Ga0137380_100312645	3300012206	Vadose Zone Soil	MQSSGPDDVARRLAEEARPVLGAEGFSEERIDELAFAFVNDHVGEGGAQFVNWALAAGPFGLDPEEGF*
Ga0137372_106255571	3300012350	Vadose Zone Soil	MQRSGPDAAASRLAEEARPLLGAEGFSDERIDELASAFVNDHVGKGVEQFVNWAVAEGPFGLDPEEGF*
Ga0137367_100699573	3300012353	Vadose Zone Soil	MRSFDPDERARLLADEARPLLGADGFSDERIDELASAFVNDRIGEGAAQFVNWARAEGPFGLDPEEGF*
Ga0137369_100751162	3300012355	Vadose Zone Soil	MEDSAHGDVASRLAEGARPILGAEGFSDERIDELAYAFVNDHVGDDSSQFVNWARAQGPFGLDPEEGL*
Ga0137369_104825552	3300012355	Vadose Zone Soil	MQSPDDLARRLADETRPVLGAEGFSDERIDELASAFIADRIGHGEAQFVNWARAEGPFGIDPEEGF*
Ga0137369_105753732	3300012355	Vadose Zone Soil	MEDSAQGDVARQLAEDVRPILGAEGFSDERIDELAYAFVNDHVGDDSSQFVNWARAQGPFGLDPEEG
Ga0137368_100165757	3300012358	Vadose Zone Soil	MQSSDPDDVARRLAEEARPQLGSEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF*
Ga0137368_105676291	3300012358	Vadose Zone Soil	MEDSAQGDVARQLAEDVRPILGAEGFSDERIDELAYAFVNDHVGDDSSQFVNWARAQGPFGLDPEEGL*
Ga0137385_106015161	3300012359	Vadose Zone Soil	MQSSGPDDVARRLAEEARPVLGAEGFSEERIDELAFAFVNDHVGEGGAQFVNWALAAGPF
Ga0134047_10333951	3300012380	Grasslands Soil	MQSSDPDGVARRLADEARPMLGAEGFSDERIDELAYAFVNDRVGEGGAQFVNWALAEGPIGLDPEEGL*
Ga0134055_12190821	3300012401	Grasslands Soil	MDGVARRLAEEARPILGAEGFSDQRIDELAYAFVNDRVGEGSTQFVNWAMVEGPVGIDPEEGL*
Ga0182000_100237261	3300014487	Soil	MQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDNNEFVNWALTEGPSGLDPEEGF*
Ga0182000_100308103	3300014487	Soil	MRDSAPDDAARRLVEEARPVLGAEGFSDERIDELAYAFVNDHIGKDSAQFVNWALAEGPFGLDPEEGL*
Ga0182000_103069292	3300014487	Soil	MQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL*
Ga0184638_100050014	3300018052	Groundwater Sediment	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVIWARAQGPFGLDPEEGL
Ga0184638_10082613	3300018052	Groundwater Sediment	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDRVGDDSSQFVNWARAQGPFGLDPEEGL
Ga0184638_10294324	3300018052	Groundwater Sediment	MRSPDPDDVARLLADEARPLLGAEGFSDERIDELASAFVTHHVGEGGAQFVNWALAEGPFGLDPEEGF
Ga0184612_101327702	3300018078	Groundwater Sediment	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELASAFVTHHVGEGGAQFVNWALAEGPFGLDPEEGF
Ga0210378_1000008619	3300021073	Groundwater Sediment	MQSSTPDDVARQLAEEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Ga0224452_11162602	3300022534	Groundwater Sediment	DVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEG
Ga0222623_100139145	3300022694	Groundwater Sediment	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGP
Ga0209896_10270831	3300027006	Groundwater Sand	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0209879_10144322	3300027056	Groundwater Sand	MQRSDPDEVARLLADEARPLLGAEGFSDERIDELAFAFVTNRVGEGAQQFVNWALAEGPFGLDPEEGF
Ga0209875_10086723	3300027209	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF
Ga0209875_10183052	3300027209	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF
Ga0209875_10371211	3300027209	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0209846_10074512	3300027277	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWALAEGPFGLDPEEGL
Ga0209846_10167992	3300027277	Groundwater Sand	MQGAVPDEVARQLAEDARPVLGAEGFSDERIDELAYAFVNDHVGQGRAQFVNWALSEGPFGLDPEEGF
Ga0209861_10496081	3300027332	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF
Ga0209842_10105662	3300027379	Groundwater Sand	MQSSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0209842_10234883	3300027379	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVSWAMAEGPFGLDPEAGF
Ga0209843_10053191	3300027511	Groundwater Sand	ARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0209887_10084495	3300027561	Groundwater Sand	MEDSAQGDIARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0209874_10339593	3300027577	Groundwater Sand	MQSSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Ga0209795_100854782	3300027718	Agave	MQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDNDQFVNWALTEGPFGLDPEEGF
Ga0209814_103936272	3300027873	Populus Rhizosphere	MPSPAKDEIARRLAEEARPTLGAEGFSDERIDELAFAFVNDMIGEGEMQFVNWAMAEGPIGLDPEAGI
Ga0209382_101992592	3300027909	Populus Rhizosphere	MRRDDAEEAANRLADEVRPVLGAEGYGDERIDELAHAFVHDRIGEGADEFVMWARAEGPIGLDPEEGF
Ga0209382_107851292	3300027909	Populus Rhizosphere	MQGTDPDDLARRLADEVRPVLGAEGFSDERIDELAYAFVADHIGMGEAQFVNWARAEGPFGI
Ga0209382_120598371	3300027909	Populus Rhizosphere	MQSSEDLAGQLADRTRPILGAEGFSDERIDELAYAFVDDHIGEGDEQFVNWARAEGPFGIDPEEGL
Ga0209889_10653532	3300027952	Groundwater Sand	MQRSDPDEVARLLADEARPLLGAEGFSDERIDELASAFVTHHIGEGGPQFVNWALAEGPFGLDPEEGF
Ga0209857_10234511	3300027957	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Ga0307301_100113943	3300028719	Soil	MPSSGSDDLARQLAEEARPVLGPEGFSDERIDELAFAFVNDGIGEGETQFVNWALAEGPIGLDPEAGF
Ga0307318_100261823	3300028744	Soil	PMPSSGSDDLARQLAEEARPVLGPEGFSDERIDELAFAFVNDGIGEGETQFVNWALAEGPIGLDPEAGF
Ga0307282_101274442	3300028784	Soil	MQRPDDRARELADHTRPILGAEGFNDERIDELAYAFVDDHIGEGEEQFVNWARAVGPFGIDPEEGL
Ga0307310_102667641	3300028824	Soil	ASPIGANRGRTSMQRPDDRARELADHTRPILGAEGFNDERIDELAYAFVDDHIGEGEEQFVNWARAVGPFGIDPEEGL
Ga0307312_102766212	3300028828	Soil	QSAGPDDVARRLAEEARPVLGADGFSDERIDELAFAFVNDHVGEGGAQFVRWALAEGPFGLDPEEGF
Ga0307278_101537081	3300028878	Soil	MQSSGPDDVARRLAEEARPVLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWALAEGPFGLDP
Ga0307278_103660901	3300028878	Soil	MQSPAPDDVARQLAEDARPVLGAEGFSDERIDELAYAFVNDHVGQDRAQFVNWALAEGPFGLDPEEGF
Ga0268243_10387592	3300030510	Soil	MRDSAPDDAARRLVEEARPVLGAEGFSDERIDELAYAFVNDHIGKDSAQFVNWALAEGPFGLDPEEGL
Ga0268243_11410372	3300030510	Soil	MQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL
Ga0268241_100032572	3300030511	Soil	MRDSAPDDAARRLVEEARPVLGAEGFSDERIDELAHAFVNDHIGKDSAEFVNWARAEGPFGLDPEEGF
Ga0268241_101677542	3300030511	Soil	SDREEWLRMQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL
Ga0268255_101266021	3300030516	Agave	MVRSDPDGAARRRADAARPLLGAEGFGGRRTDELASTFLTDHVGEGGAQFLGWARAEGPVGLDPEVGL
Ga0307408_1005508441	3300031548	Rhizosphere	MQGAVPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHIGEDRAQFVNWALAEGPFGLDPEEGF
Ga0307405_101162202	3300031731	Rhizosphere	MQGAAPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0307406_112056371	3300031901	Rhizosphere	MQGAVPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0268251_100011927	3300032159	Agave	MQNSAPDDAVRRLAEDARPVLGAQGFSDERIDELAYAFVNDHVGKDSAQFVDWALAEGPFGLDPEEGF
Ga0268251_100194615	3300032159	Agave	MHSAHDPARQLADRTRPILGAEGFSNERIDELASAFVDDHIGQGEDQFVNWARAEGPFGIDPEEGL
Ga0268251_100216394	3300032159	Agave	DDAARRLVEEARPVLGAEGFSDERIDELAYAFVNDHIGKDSAQFVNWALAEGPFGLDPEEGL
Ga0268251_102042612	3300032159	Agave	MQGAVPDDVARRLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLDPEEGF
Ga0334913_000838_4604_4810	3300034172	Sub-Biocrust Soil	MQGAAPDDLARQLAEDARPILGAEGFSDERIDELAYAFVNDRIGEDRDQFVNWAMSEGPFGLDPEEGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091539

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences