Metagenome / Metatranscriptome Family F091691

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F091691
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	64 residues
Representative Sequence	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRK
Number of Associated Samples	77
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	60.71 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	18.69 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (73.832 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (48.598 % of family members)
Environment Ontology (ENVO)	Unclassified (48.598 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.467 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 76.92% β-sheet: 0.00% Coil/Unstructured: 23.08%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13239	2TM	24.30
PF00248	Aldo_ket_red	12.15
PF01384	PHO4	1.87
PF04185	Phosphoesterase	1.87
PF08471	Ribonuc_red_2_N	0.93
PF04307	YdjM	0.93
PF00437	T2SSE	0.93
PF03484	B5	0.93
PF01865	PhoU_div	0.93
PF00801	PKD	0.93
PF01243	Putative_PNPOx	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	1.87
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.87
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	0.93
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.93
COG1392	Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 family	Inorganic ion transport and metabolism [P]	0.93
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
All Organisms	root	All Organisms	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
cellular organisms	root	All Organisms → cellular organisms	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	25.23 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	9.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	9.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	9.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	9.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005179\|Ga0066684_10148736	All Organisms → cellular organisms → Archaea	1484	Open in IMG/M
3300005451\|Ga0066681_10114672	All Organisms → cellular organisms → Archaea	1554	Open in IMG/M
3300005568\|Ga0066703_10034674	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2742	Open in IMG/M
3300005576\|Ga0066708_10391037	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	893	Open in IMG/M
3300005586\|Ga0066691_10188848	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300009012\|Ga0066710_100130607	All Organisms → cellular organisms → Archaea	3447	Open in IMG/M
3300009038\|Ga0099829_10241856	All Organisms → cellular organisms → Archaea	1470	Open in IMG/M
3300009088\|Ga0099830_10800541	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	778	Open in IMG/M
3300012189\|Ga0137388_10290991	All Organisms → cellular organisms → Archaea	1495	Open in IMG/M
3300012189\|Ga0137388_10332329	All Organisms → cellular organisms → Archaea	1398	Open in IMG/M
3300012199\|Ga0137383_10092616	All Organisms → cellular organisms → Archaea	2191	Open in IMG/M
3300012199\|Ga0137383_10130117	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1838	Open in IMG/M
3300012202\|Ga0137363_10035876	All Organisms → cellular organisms → Archaea	3461	Open in IMG/M
3300012211\|Ga0137377_10167248	All Organisms → cellular organisms → Archaea	2109	Open in IMG/M
3300012362\|Ga0137361_11346701	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	638	Open in IMG/M
3300012918\|Ga0137396_10294677	All Organisms → cellular organisms → Archaea	1199	Open in IMG/M
3300012918\|Ga0137396_10300492	All Organisms → cellular organisms → Archaea	1187	Open in IMG/M
3300018468\|Ga0066662_10706162	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	963	Open in IMG/M
3300026301\|Ga0209238_1031028	All Organisms → cellular organisms → Archaea	1987	Open in IMG/M
3300026335\|Ga0209804_1003744	All Organisms → cellular organisms → Archaea	8799	Open in IMG/M
3300026507\|Ga0257165_1059065	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	694	Open in IMG/M
3300026529\|Ga0209806_1130215	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	999	Open in IMG/M
3300026536\|Ga0209058_1295783	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	557	Open in IMG/M
3300027748\|Ga0209689_1045879	All Organisms → cellular organisms → Archaea	2482	Open in IMG/M
3300027846\|Ga0209180_10290702	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	937	Open in IMG/M
3300027882\|Ga0209590_10082323	All Organisms → cellular organisms → Archaea	1883	Open in IMG/M
3300031962\|Ga0307479_10117041	All Organisms → cellular organisms → Archaea	2597	Open in IMG/M
3300032180\|Ga0307471_100869874	All Organisms → cellular organisms → Archaea	1068	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	98.13%
Loam	Environmental → Terrestrial → Soil → Loam	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	36.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	48.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	16.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_102213741	3300002558	Grasslands Soil	MSDSDKALQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTD
JGI25384J37096_101043791	3300002561	Grasslands Soil	MSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDLAKAT
JGI25382J37095_100435713	3300002562	Grasslands Soil	MSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDLAK
JGI25382J43887_102702913	3300002908	Grasslands Soil	MSDSDKTLQDMEEGADDMTKYSKLFLQFLKKEVFQDRTSISVEEAVTLVAALMDLSVSLLSKFRNEPIDATKATEI
Ga0066672_104109822	3300005167	Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRK
Ga0066683_101067243	3300005172	Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERMNVSVEEVVTLVAALTDLSVSLLAKFRK
Ga0066688_106797051	3300005178	Soil	MSDSDKVLQDMEEAGDGMTKYSNMLLEFIKREVFQERKNVSVEEVVTLVAALTDISVSLLAKFRKE
Ga0066684_101487363	3300005179	Soil	MEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLL
Ga0066675_104201501	3300005187	Soil	MSDSDKSLHDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTL
Ga0066682_104567801	3300005450	Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEIFDGRKDISVEEVVTLVAALTDLSVSLLSKFR
Ga0066682_107479242	3300005450	Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERMNVSVEEVVTLVAALTDLS
Ga0066681_101146721	3300005451	Soil	MEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKF
Ga0070707_1004532571	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSDKVLQDMEEGGDGMTKYGNMILEFVKKEVFQDRKNVSVEEIVTLVAALT
Ga0066695_106958423	3300005553	Soil	MGDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIG
Ga0066700_110649511	3300005559	Soil	MTDSGAALSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVS
Ga0066703_100346744	3300005568	Soil	MVLSMSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDPAEAT
Ga0066708_103910373	3300005576	Soil	MTDSSPALSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSL
Ga0066691_101888481	3300005586	Soil	MSDSDKVLQDMEEAGDGMTKYSNMLLEFIKREVFQERKNVSVEEVVTLVAALTDISVSLLAKFRKEPVDPSRAT
Ga0066665_110950512	3300006796	Soil	LSDSDKVLQDMEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTD
Ga0066659_110930471	3300006797	Soil	MSDSDRVLRDMEEGGDGMTKYGNMLLEFIKKEIFQERKNVSVEEIVTLVASLTDVSV
Ga0099794_107766962	3300007265	Vadose Zone Soil	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLVAALTDI
Ga0066710_1001306075	3300009012	Grasslands Soil	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFR
Ga0066710_1001861851	3300009012	Grasslands Soil	MTDSGPVLSDMEEGGDGMAKYARMMLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDLAKATEVGRDV
Ga0066710_1023981761	3300009012	Grasslands Soil	MSDSDKVLQDMEEGGEGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRK
Ga0066710_1032573171	3300009012	Grasslands Soil	LSDSDKMLQDMEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKF
Ga0099829_102418561	3300009038	Vadose Zone Soil	MSDSDKVLQDMEEGGDGMSKYGNMMLEFIKKEIFQERKNVSVEEVVTLIAA
Ga0099829_106764821	3300009038	Vadose Zone Soil	MSDSDKVLQDMEEGGEGMTKYGNMLLEFIKREVFQERKNVSVEEVVTLVAALTDISVSLLSKFRKEP
Ga0099830_108005411	3300009088	Vadose Zone Soil	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAAV*
Ga0099828_103370663	3300009089	Vadose Zone Soil	MTDSDKILQDMEEGGDGMTKYGNMILEFIKKEVFQERKTVSVEEVVTLVAALTDMSVSLLAKFRKD
Ga0066709_1012989993	3300009137	Grasslands Soil	MSDSDKSLQDMEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIGRDVFK
Ga0066709_1013905143	3300009137	Grasslands Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVS
Ga0066709_1027209911	3300009137	Grasslands Soil	MLQDMEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKF
Ga0066709_1044926702	3300009137	Grasslands Soil	MTDSDAVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDLAKATEVGR
Ga0126373_115315521	3300010048	Tropical Forest Soil	MSEPNEVLQDIEEGGDGLAKYSQMILDFVRKEIFQDRKNVSVEEVVTLVA
Ga0134088_103964962	3300010304	Grasslands Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERMNVSVEEVVTLVAALTDLSVSLLSKFRKDPIDPS
Ga0134088_105047981	3300010304	Grasslands Soil	MSDSDKTLQDMEEGAADMTKYSKLFLEFLKKEVFQDRKNITVEEAVTLVAALMDLSVSLLSKF
Ga0134088_107123791	3300010304	Grasslands Soil	MTSSDTVLPDMEEGADGMGRYTKMLLNFIKKDVFAERKQVSVEEVVTL
Ga0134065_102150772	3300010326	Grasslands Soil	MSDSDRVLRDMEEGGDGMTKYGNMLLEFIKKEIFQERKNVSVEEIVTLVASLTDVSVGLLAKFRKEPVDESRVA
Ga0134071_100736664	3300010336	Grasslands Soil	MSDPNTPLHDMEEGSEGMVKYATMVLDFIKKDVFKDRKQVSVEEVV
Ga0137391_102548202	3300011270	Vadose Zone Soil	MTDSDKILQDMEGGGDGMTKYGNMILEFIKKEVLQERKSVSVEEVVTLVAALTDMSVSLLAKFRKDPIDSSQ
Ga0137391_105358832	3300011270	Vadose Zone Soil	MSDSDKILQDMEEGGDGMTKYGNMMLEFIKKEIFQERKNVSVEEVVTLVAALTDLSVSLLAKFRKEPLDASRATEIGRDA
Ga0137388_102909911	3300012189	Vadose Zone Soil	MEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKF
Ga0137388_103323293	3300012189	Vadose Zone Soil	MNESDKVLHDMEEGGDGMTKYGNMMLEFIKREIFQERKNISVEEMVTLVAALTDLSVSLLAKFRKEPI
Ga0137388_119566042	3300012189	Vadose Zone Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEIFQERKNVSVEEVVTLIAALTD
Ga0137364_110891062	3300012198	Vadose Zone Soil	MSDSDKSLQDMEEGGDGMTKYGNMILEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRKDPIDSSR
Ga0137383_100926161	3300012199	Vadose Zone Soil	MEEGGEGMTKYGNMMLEFIKKEIFEERTNISVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIGRDV
Ga0137383_101301174	3300012199	Vadose Zone Soil	MTDSGPVLSDMEEGGDGMAKFAGMVLEFIKKDVFENRKQVSVEEVVTLIAALTDISVSLLSRF
Ga0137383_103886741	3300012199	Vadose Zone Soil	MEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIGRDV
Ga0137382_106615492	3300012200	Vadose Zone Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLAKFRKDPIDPSR
Ga0137382_107796901	3300012200	Vadose Zone Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDL
Ga0137365_109103511	3300012201	Vadose Zone Soil	MSDSDRSLQDMEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIGRDV
Ga0137363_100358766	3300012202	Vadose Zone Soil	MEEGGDGMTKYGNMMLEFIKKEVFQDRKNVSVEEIVTLVAALTDLSVSLLAKFRKEPIDPSRATDIGR
Ga0137399_105953411	3300012203	Vadose Zone Soil	MSDSNKTLHDMEEGADDMTKYSKLFLEFLKKEVFQDRTSISVEEAVTLVAALMDLSVSLLSKFRNEPIDSTKA
Ga0137380_106709161	3300012206	Vadose Zone Soil	MSDSDRVLRDMEEGGDGMTKYGKMLLEFIKKEIFEERKNVSVEEIVTLVASLTDVSVGLLAKFRKEPIDESRVAE
Ga0137380_109399282	3300012206	Vadose Zone Soil	MEESGDGMTKYGNMMLEFIKKEIFEERKNVSVEEVVTLVAALTDLSVSLLSKFRKEPID
Ga0137381_100108571	3300012207	Vadose Zone Soil	MTDSGPALSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDI
Ga0137381_107128411	3300012207	Vadose Zone Soil	MSDSDKSLQDMEEGGDGMTKYGNMILEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLL
Ga0137379_115476871	3300012209	Vadose Zone Soil	MTDSGPGLSDMEEGGDGMSKYAAMVLAFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLL
Ga0137378_104836593	3300012210	Vadose Zone Soil	MEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRK
Ga0137378_118027692	3300012210	Vadose Zone Soil	MEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDQVDPAKATEVGRDVFKYM
Ga0137377_101672484	3300012211	Vadose Zone Soil	MEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKD
Ga0137377_107302261	3300012211	Vadose Zone Soil	MEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIGRDVFKHMV
Ga0137386_105703921	3300012351	Vadose Zone Soil	MTDSGPALSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDLAKATEVGRDV
Ga0137367_107844281	3300012353	Vadose Zone Soil	MNDSDRVLRDMEEGGDGMTKYGNMLLEFIKKEIFQERKNVSVEEIVTLVASLTDVSVGL
Ga0137371_113987252	3300012356	Vadose Zone Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFR
Ga0137384_106528042	3300012357	Vadose Zone Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATE
Ga0137368_103806722	3300012358	Vadose Zone Soil	MSSSDKVLHDMEEGDGMTKYSNMILDFIKKEVFHERRNVSAEEIVTLVAALTDL
Ga0137385_105487793	3300012359	Vadose Zone Soil	MEEGGEGMTKYGNMMLEFIKKEIFEERTNVSVEEVVTLVAALTDLSVSLLSKFRKDPI
Ga0137385_106792021	3300012359	Vadose Zone Soil	MSDSDKSLQDMEEGGEGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRKDPIDSSR
Ga0137360_102275221	3300012361	Vadose Zone Soil	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTD
Ga0137360_118074971	3300012361	Vadose Zone Soil	MEEGGDGMTKYGNMMLEFIKKEVFQDRKNVSVEEIVTLVAALTDLSVSLLARFRKEPIDP
Ga0137361_113467011	3300012362	Vadose Zone Soil	MEEGGDGMAKFARMVLEFIKKDVFENRKQVSVEEVVTLIAALTDISVSLLSRFRKDQVDPARATEVGRDV
Ga0134047_11826942	3300012380	Grasslands Soil	MSDSDRVLRDMEEGGDGMTKYGNMLLEFIKKEIFQERKNVSVEEIVTLVASLTDVSVGLLAKFRKE
Ga0137396_102946773	3300012918	Vadose Zone Soil	MSDSDKVLQDMEEGSDGMTKYGNMMLEFIKKEIFQERKNVSVEEVVTLIAALTDLSVSLLAKFRKEP
Ga0137396_103004923	3300012918	Vadose Zone Soil	MGDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEIFQERKNVSVEEVVTLIAALTDLSVSLLAKFR
Ga0137396_105884552	3300012918	Vadose Zone Soil	MTDSERVLQDMEEGGDGMTKYGNMILEFIKKEVFQDRKNVSVEEMVTLVAALTDLSVSLLARFR
Ga0137396_109612171	3300012918	Vadose Zone Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEVFQERKNVSVEEVVTLIAALTDLSVSLLAKFRKEPLD
Ga0137394_112963252	3300012922	Vadose Zone Soil	MSDSDKTLQDMEEGGDGMTKYGNMILEFVKKEVFQDRKNVSVEEIVTLVAA
Ga0134075_103759611	3300014154	Grasslands Soil	MSDSDRVLRDMEEGGDGMTKYGNMLLEFIKKEIFQERKNVSVEEIVTLVAS
Ga0137409_109678211	3300015245	Vadose Zone Soil	MEEGGDGMTKYGNMMLEFIKKEVFQDRKNVSVEEMVTLVAALTDLSVSLLARFRKEPIDPVQATEIGREVFKHM
Ga0134112_105267582	3300017656	Grasslands Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEIFEERMNVSVEEVVTLVAAL
Ga0134083_105421221	3300017659	Grasslands Soil	MTDSGSALSDMEEGGDGMAKYARMVLEFIKEDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDLAKATEVGRDV
Ga0066662_106126441	3300018468	Grasslands Soil	MEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRKEPIDSSRA
Ga0066662_107061623	3300018468	Grasslands Soil	MADSGPVLSDMEDSGDGMAKYAAMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVGLLSRFRKDQVD
Ga0066662_110219051	3300018468	Grasslands Soil	MSDSDKTLQDMEEGADDMTKYSKLFLEFLKKEVFQDRKNITVEEAVTLVAALMDLSVSLLSK
Ga0215015_103635572	3300021046	Soil	MSDSEKILPDMEEGGDGMSKYSNMILAFIKDQVFQERKNVSVEEVVTLVAALTDLSVSLLGKFRKEPLD
Ga0207685_106567332	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEIVTLIAALTDISVSLLSRFRKDQVDPEKATE
Ga0209235_10822303	3300026296	Grasslands Soil	MSDPGSVLSDMEEGGDGMAKYAAMVLEFIKKDVFEERKQVSVEEVVTLVAALTDI
Ga0209238_10310281	3300026301	Grasslands Soil	MSDSDKSLQDMEEGGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRKDPIDPSRATEIGRD
Ga0209375_10522131	3300026329	Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEIFDGRKDISVEEVVTLVAAL
Ga0209158_11259941	3300026333	Soil	MSDSNKTLHDMEEGADDMTKYSKLFLQFLKKEVFQDRTSISVEEAVTLVAALMDLSVSLLSKFRNEPIDATKATEIGRD
Ga0209804_10037441	3300026335	Soil	MEEAGDGMTKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSLLSKFRKEPIDPSRATE
Ga0257165_10590652	3300026507	Soil	LSMSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFR
Ga0209806_11302153	3300026529	Soil	MVLSMSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDEVDPAEATE
Ga0209058_12957832	3300026536	Soil	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEERKQVSVEEVVTLIAALTDIS
Ga0209648_103062772	3300026551	Grasslands Soil	MSDSDKVLQDMEEGGEGMTKYGNMLLEFIKREVFQERKNVSVEEVVTLVAALTDISVSLLSKCSSIWLGR
Ga0209689_10458795	3300027748	Soil	MSDSDKSLQDMEEGGDGMRKYGNMMLEFIKKEIFEERKNISVEEVVTLVAALTDLSVSL
Ga0209180_102907023	3300027846	Vadose Zone Soil	MTDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLSRFRKDQVDPAKATEVGRDV
Ga0209701_102191583	3300027862	Vadose Zone Soil	MSDSDKVLQDMEDGGDGMTKYSNMMLDFIKREVFQERKNISVEEVVTLVAALTDLSVGLLAKFRKEPVDPSRATEIG
Ga0209701_104754001	3300027862	Vadose Zone Soil	MSDSDRVLQDMEEGGDGMTKYGNMMLEFIKKEVFQDRKNVSVEEMVTLVAALTDLSVSLL
Ga0209283_101928603	3300027875	Vadose Zone Soil	MTDSDKILQDMEEGGDGMTKYGNMILEFIKKEVFQERKTVSVEEVVTLVA
Ga0209283_107894701	3300027875	Vadose Zone Soil	MSGSDKILQDMEEGGDGMTKYSNMILEFIKKEVFQERKTVSVDEVVVLVAALTDL
Ga0209283_108767431	3300027875	Vadose Zone Soil	LSMSDSGPVLSDMEEGGDGMAKYARMVLEFIKKDVFEDRKQVSVEEVVTLIAALTDISVSLLAKFRKDQVDPAKA
Ga0209590_100823231	3300027882	Vadose Zone Soil	MSDSDKILQDMEEGGDGMTKYGNMILEFVKKEVFQDRKNVSVEEIVTLVAALTDLSVSLL
Ga0137415_111389801	3300028536	Vadose Zone Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEIFEDRKNVSVEEIVTLVAALTDLS
Ga0307479_101170411	3300031962	Hardwood Forest Soil	MKDSDKVLQDMEEGADGMTKYGNMMLEFIKKEIFQERKNISVEEVVTLVAALTDLSVSLLAKFRKEP
Ga0307471_1008698741	3300032180	Hardwood Forest Soil	MSDSDKVLQDMEEGGDGMTKYGNMMLEFIKKEVFQERKNVSVEEIVTLVAALTDLSVSLLAKFRKEPIDPSRATEI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091691

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences