Metagenome / Metatranscriptome Family F092007

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092007
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	46 residues
Representative Sequence	WFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Number of Associated Samples	84
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.67 %
% of genes near scaffold ends (potentially truncated)	90.65 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.290 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (47.664 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.467 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.11% β-sheet: 0.00% Coil/Unstructured: 41.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04392	ABC_sub_bind	1.87
PF03797	Autotransporter	1.87
PF06965	Na_H_antiport_1	1.87
PF01740	STAS	1.87
PF05974	DUF892	1.87
PF01522	Polysacc_deac_1	0.93
PF00589	Phage_integrase	0.93
PF03330	DPBB_1	0.93
PF02852	Pyr_redox_dim	0.93
PF05016	ParE_toxin	0.93
PF02628	COX15-CtaA	0.93
PF05683	Fumerase_C	0.93
PF13533	Biotin_lipoyl_2	0.93
PF14534	DUF4440	0.93
PF13439	Glyco_transf_4	0.93
PF03466	LysR_substrate	0.93
PF00355	Rieske	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.87
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.87
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.87
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1612	Heme A synthase	Coenzyme transport and metabolism [H]	0.93
COG1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.29 %
Unclassified	root	N/A	32.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.29 %
Unclassified	root	N/A	32.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.29 %
Unclassified	root	N/A	32.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.34 %
Unclassified	root	N/A	32.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.47 %
Unclassified	root	N/A	32.71 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	29.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.95 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	29.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.48 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	29.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	29.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002HFPRL	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
2170459005\|F1BAP7Q02J0K10	Not Available	502	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1071799	Not Available	610	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1082840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300005093\|Ga0062594_101899334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300005185\|Ga0066811_1019215	Not Available	572	Open in IMG/M
3300005434\|Ga0070709_10982669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300005437\|Ga0070710_10180062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1323	Open in IMG/M
3300005764\|Ga0066903_102848939	Not Available	938	Open in IMG/M
3300006028\|Ga0070717_10417648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300006575\|Ga0074053_11961331	All Organisms → cellular organisms → Bacteria → Proteobacteria	1025	Open in IMG/M
3300006755\|Ga0079222_11638794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	613	Open in IMG/M
3300006791\|Ga0066653_10231638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	940	Open in IMG/M
3300009094\|Ga0111539_11394476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	813	Open in IMG/M
3300009156\|Ga0111538_13756370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	526	Open in IMG/M
3300009176\|Ga0105242_12244003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300009553\|Ga0105249_11134296	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300010048\|Ga0126373_12723304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300010366\|Ga0126379_12974934	Not Available	567	Open in IMG/M
3300010366\|Ga0126379_13546472	Not Available	523	Open in IMG/M
3300010371\|Ga0134125_12301711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300010398\|Ga0126383_10334466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1528	Open in IMG/M
3300010400\|Ga0134122_10281907	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300011119\|Ga0105246_10631262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	930	Open in IMG/M
3300012212\|Ga0150985_101685563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1053	Open in IMG/M
3300012929\|Ga0137404_12238488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300012971\|Ga0126369_11410850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786	Open in IMG/M
3300012987\|Ga0164307_11722408	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	531	Open in IMG/M
3300012988\|Ga0164306_11467990	Not Available	583	Open in IMG/M
3300013096\|Ga0157307_1159974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300013306\|Ga0163162_10322874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1676	Open in IMG/M
3300014325\|Ga0163163_13269962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	505	Open in IMG/M
3300014326\|Ga0157380_10166184	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300014326\|Ga0157380_11771838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	676	Open in IMG/M
3300015371\|Ga0132258_10346912	All Organisms → cellular organisms → Bacteria	3669	Open in IMG/M
3300015373\|Ga0132257_103688300	Not Available	557	Open in IMG/M
3300015373\|Ga0132257_104097850	Not Available	530	Open in IMG/M
3300016270\|Ga0182036_10589140	Not Available	890	Open in IMG/M
3300016294\|Ga0182041_11201642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300016294\|Ga0182041_11306415	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300016357\|Ga0182032_10051403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2676	Open in IMG/M
3300016371\|Ga0182034_10608806	Not Available	922	Open in IMG/M
3300016371\|Ga0182034_10872752	Not Available	773	Open in IMG/M
3300016387\|Ga0182040_10828935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764	Open in IMG/M
3300016387\|Ga0182040_11377617	Not Available	597	Open in IMG/M
3300016422\|Ga0182039_11390289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300016445\|Ga0182038_11511471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300016445\|Ga0182038_11651802	Not Available	577	Open in IMG/M
3300016445\|Ga0182038_12141247	Not Available	507	Open in IMG/M
3300017993\|Ga0187823_10232845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300018007\|Ga0187805_10596634	Not Available	522	Open in IMG/M
3300021377\|Ga0213874_10336278	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300021405\|Ga0210387_11168149	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300021475\|Ga0210392_10675256	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300021478\|Ga0210402_10823020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300025321\|Ga0207656_10084749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1430	Open in IMG/M
3300025903\|Ga0207680_10074847	All Organisms → cellular organisms → Bacteria	2110	Open in IMG/M
3300025907\|Ga0207645_10271737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1124	Open in IMG/M
3300025915\|Ga0207693_10225413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1472	Open in IMG/M
3300025932\|Ga0207690_11154330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300025941\|Ga0207711_10277822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1542	Open in IMG/M
3300025945\|Ga0207679_12172464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300026089\|Ga0207648_10030313	All Organisms → cellular organisms → Bacteria	4792	Open in IMG/M
3300026121\|Ga0207683_10617686	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300027010\|Ga0207839_1031335	Not Available	603	Open in IMG/M
3300028802\|Ga0307503_10764600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300031170\|Ga0307498_10320884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300031226\|Ga0307497_10621178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300031546\|Ga0318538_10177832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300031573\|Ga0310915_10272849	Not Available	1192	Open in IMG/M
3300031573\|Ga0310915_10456923	Not Available	907	Open in IMG/M
3300031681\|Ga0318572_10891624	Not Available	528	Open in IMG/M
3300031744\|Ga0306918_11116648	Not Available	610	Open in IMG/M
3300031763\|Ga0318537_10022503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2201	Open in IMG/M
3300031764\|Ga0318535_10091754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1322	Open in IMG/M
3300031770\|Ga0318521_10535372	Not Available	706	Open in IMG/M
3300031779\|Ga0318566_10145869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1172	Open in IMG/M
3300031832\|Ga0318499_10096109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300031833\|Ga0310917_10028042	Not Available	3304	Open in IMG/M
3300031833\|Ga0310917_10926373	Not Available	586	Open in IMG/M
3300031879\|Ga0306919_10143654	Not Available	1733	Open in IMG/M
3300031879\|Ga0306919_10511150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	926	Open in IMG/M
3300031879\|Ga0306919_11323049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031890\|Ga0306925_10905985	Not Available	906	Open in IMG/M
3300031890\|Ga0306925_11460145	Not Available	671	Open in IMG/M
3300031910\|Ga0306923_10308014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1809	Open in IMG/M
3300031910\|Ga0306923_12144823	Not Available	562	Open in IMG/M
3300031912\|Ga0306921_10083364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3685	Open in IMG/M
3300031912\|Ga0306921_10357748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1706	Open in IMG/M
3300031941\|Ga0310912_10512777	Not Available	934	Open in IMG/M
3300031941\|Ga0310912_11229543	Not Available	569	Open in IMG/M
3300031942\|Ga0310916_10119609	All Organisms → cellular organisms → Bacteria	2141	Open in IMG/M
3300031942\|Ga0310916_10635773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031945\|Ga0310913_10719516	Not Available	706	Open in IMG/M
3300031945\|Ga0310913_10763622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300031945\|Ga0310913_11078636	Not Available	561	Open in IMG/M
3300031954\|Ga0306926_10668459	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300031954\|Ga0306926_12384252	Not Available	584	Open in IMG/M
3300031959\|Ga0318530_10332021	Not Available	629	Open in IMG/M
3300032001\|Ga0306922_11495115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300032035\|Ga0310911_10705025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300032041\|Ga0318549_10260467	Not Available	781	Open in IMG/M
3300032063\|Ga0318504_10001296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6550	Open in IMG/M
3300032076\|Ga0306924_10300509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1842	Open in IMG/M
3300032076\|Ga0306924_10709804	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300032261\|Ga0306920_100072651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5043	Open in IMG/M
3300032261\|Ga0306920_103581297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.44%
Host-Associated	Host-Associated	20.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.57%
Plants	Host-Associated → Plants	20.56%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Roots	Host-Associated → Plants → Roots	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%
Loam	Environmental → Terrestrial → Soil → Loam	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.34%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_02169100	2170459003	Grass Soil	GWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
E41_03984770	2170459005	Grass Soil	FLAKTRPVFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
AF_2010_repII_A100DRAFT_10717992	3300000655	Forest Soil	RDATSFTVVQMMFATLVLAAFVTLIVCWQKLVEYWRSYWKPR*
AF_2010_repII_A100DRAFT_10828401	3300000655	Forest Soil	AGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRTLWKTR*
Ga0062594_1018993342	3300005093	Soil	SAGGVVASWFFSKDAVSFTVVQMMFATLMLAAFLSLIVFWQTLVEYCRSHWKTR*
Ga0066811_10192152	3300005185	Soil	FSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0070709_109826692	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GGVVAGWFFSRDATSFTVVQMMFATLVLAAFVTLIVCWQSLVEYWRSFWKPR*
Ga0070710_101800621	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GGVVAGWFFSRDATSFTVVQMMFATLVLAAFVTLIVCWQKLVEHWRSYWKPR*
Ga0066903_1028489393	3300005764	Tropical Forest Soil	MKFFSKDATSFTVVQMMFATLVLAAFVTLVVFWQQLIEYFRSLWKTR*
Ga0070717_104176481	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GGVVAGWFFSRDATSFTVVQLMFATLVLAAFVTLLVCWQKLVEYWRSFWKPR*
Ga0074053_119613313	3300006575	Soil	SAGGFVASWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0079222_116387942	3300006755	Agricultural Soil	VVAGWFFSKDATSFTVLQMMFATLVLAAFVALLVCGQRLIEYSRSRRKVH*
Ga0066653_102316381	3300006791	Soil	DAISFTVVQMMFATLVLAAFVALIVFWQTLVEHWRSLRKAG*
Ga0111539_113944763	3300009094	Populus Rhizosphere	VASWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0111538_137563701	3300009156	Populus Rhizosphere	TSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0105242_122440031	3300009176	Miscanthus Rhizosphere	GIVAGWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYLRSYWKTR*
Ga0105249_111342962	3300009553	Switchgrass Rhizosphere	RIGGVVAGWFFSRDATSFTVVQMMFATLVLAAFVTLIVCWQSLVEYWRSFWKPR*
Ga0126373_127233043	3300010048	Tropical Forest Soil	GVVAGWFFSKDATSFTVVQMMFATLVLVAFVALLVFWQRLVEYCRTLWKTR*
Ga0126379_129749342	3300010366	Tropical Forest Soil	LRIGGVVAGWFFSKDETSFTLVQMMFATVVLAAFVTLLAFLQRLFQYCRSLWKTR*
Ga0126379_135464721	3300010366	Tropical Forest Soil	TSFTVVQMMFATLVLAAFVTLIVCWQTLVEYWRSHWKPR*
Ga0134125_123017111	3300010371	Terrestrial Soil	GVVAGWFFSRDATSFTVVQMMFATLVLAAFVTLIVCWQSLVEYWRSFWKPR*
Ga0126383_103344663	3300010398	Tropical Forest Soil	VVQMMFATLVLAAFVTLLVFWQQLIEYFRSLWKTR*
Ga0134122_102819071	3300010400	Terrestrial Soil	GWFFSRDATSFTVVQMMFATLVLAAFVTLIVCWQKLVEHWRSYWKPR*
Ga0105246_106312623	3300011119	Miscanthus Rhizosphere	GWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYLRSYWKTR*
Ga0150985_1016855633	3300012212	Avena Fatua Rhizosphere	VVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0137404_122384881	3300012929	Vadose Zone Soil	FVASWFFSKDATSFTLVQMMFATLMLAAFVLLIIFWQTLVEYWRSLWKTRSP*
Ga0126369_114108501	3300012971	Tropical Forest Soil	IGGVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFRQRLAECCRSLWRTH*
Ga0164307_117224081	3300012987	Soil	DATSFTVVQMMFATLVLAALVVLVVFWQTLVEYWRSVWKTR*
Ga0164306_114679902	3300012988	Soil	DATSFTVVQMMFATLVLAAFVTLIVCWQSLVEYWRSFWKPR*
Ga0157307_11599742	3300013096	Soil	LSAGGFVASWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0163162_103228742	3300013306	Switchgrass Rhizosphere	LVFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSFWKPR*
Ga0163163_132699621	3300014325	Switchgrass Rhizosphere	LSAGGFVASWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKAR*
Ga0157380_101661841	3300014326	Switchgrass Rhizosphere	SKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR*
Ga0157380_117718381	3300014326	Switchgrass Rhizosphere	SKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKAR*
Ga0132258_103469122	3300015371	Arabidopsis Rhizosphere	LARLVAGWFFSRDATSFTVVQMMFATLVLAAFVTMIVCWQKLVGYWRSFWNPH*
Ga0132257_1036883001	3300015373	Arabidopsis Rhizosphere	GGLVAGWFFSKDATTFTVVQMMFATIMLAAFVALIVCWQRLFESCRSLWKTR*
Ga0132257_1040978501	3300015373	Arabidopsis Rhizosphere	FSRDATSFTVVQMMVSTLVLAAFVTMIVCWQKLVGYWRSFWNPH*
Ga0182036_105891401	3300016270	Soil	KDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0182041_112016422	3300016294	Soil	MGGVVAGWFFSKDATSFTVVQMMFATLVLAAFVTLLVFWQQLIDYFRSLWKAR
Ga0182041_113064151	3300016294	Soil	DATSFTVVQMMFATIVLAAFVALLVCGQSLVEYCRSLWKMR
Ga0182032_100514031	3300016357	Soil	KDATSFTVVQMMFATLVLAAFVALLVSWQRLVEYCRSLWKTR
Ga0182034_106088061	3300016371	Soil	TSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0182034_108727521	3300016371	Soil	FFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0182040_108289352	3300016387	Soil	MNDWANFSTGAGRVVAGWFFSKDATSFTVVQMMFATLVLAAFVTLLAFSQRLLEYCRSLW
Ga0182040_113776172	3300016387	Soil	DATSFTVVQMMFATLVLAAFVALLVFWQRLIEYCRSLWKTR
Ga0182039_113902892	3300016422	Soil	VAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRTLCKTR
Ga0182038_115114712	3300016445	Soil	WFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0182038_116518021	3300016445	Soil	FTVVQMMVATLVLAAFVALLVFWQSLFQYCRSLWKTR
Ga0182038_121412471	3300016445	Soil	LAFFSKDATSFTVVQMMFATLVLAAFVVLLVFWQKLIDYCRSLWKAR
Ga0187823_102328451	3300017993	Freshwater Sediment	DATGFTLVQMGFATLVLAAFVALIVFWQTLVEYCRSL
Ga0187805_105966341	3300018007	Freshwater Sediment	EDATGFTLVQMGFATLVLAALVALFVFWQTLVEYCRGLWKT
Ga0213874_103362782	3300021377	Plant Roots	IDGVVAGWFFNRDATSFTVVQMMFATLVLAAFVTLIVCWQQLVEYWRSYWKPR
Ga0210387_111681491	3300021405	Soil	SRDATSFTVVQMMFATLVLAAFVTLIVCWQSLVEYWRSFWKPADRIR
Ga0210392_106752561	3300021475	Soil	TPRDATSFTVVQMMFATLVLAAFVTLILCWQSLVEYWRSFWKPADRIR
Ga0210402_108230201	3300021478	Soil	RIGGVVAGWFFSKDATSFTVVQMMVATLVLAAFVALLVFWQSLFEYCRSLWKTR
Ga0207656_100847491	3300025321	Corn Rhizosphere	VVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0207680_100748471	3300025903	Switchgrass Rhizosphere	GFVASWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0207645_102717372	3300025907	Miscanthus Rhizosphere	TSFTVVQMMFATLMLVAFLSLIVFWQTLVEYWRSHWKTR
Ga0207693_102254132	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GVVAGWFFSRDATSFTVVQMMFATLVLAAFVTLLVCWQKLVEYWRSFWKPR
Ga0207690_111543301	3300025932	Corn Rhizosphere	VASWFFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0207711_102778223	3300025941	Switchgrass Rhizosphere	FFSKDATSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0207679_121724642	3300025945	Corn Rhizosphere	RIGGVVAGWFFSKDATSFTVLQMMFATLVLAAFVALLVCGQRLIEYSRSRRKVH
Ga0207648_100303134	3300026089	Miscanthus Rhizosphere	FTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0207683_106176861	3300026121	Miscanthus Rhizosphere	KDATSFTVVQMMFATLMLVAFLSLIVFWQTLVEYWRSHWKTR
Ga0207839_10313352	3300027010	Tropical Forest Soil	LAFFSKDATSFTVVQMMFATLVLTAFVVLLVFWQKLIDYCRSLWKAR
Ga0307503_107646001	3300028802	Soil	SAQTAGGVVASWFFSKDAVSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0307498_103208841	3300031170	Soil	GVVASWFFSKDAVSFTVVQMMFATLMLAAFLSLIVFWQTLVEYWRSHWKTR
Ga0307497_106211781	3300031226	Soil	SAGGLVAGWFFSKDATSFTVVQMMFATLILAAFLSLIVFWQTLVEYWRSHRKTR
Ga0318538_101778323	3300031546	Soil	GVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0310915_102728491	3300031573	Soil	SFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0310915_104569232	3300031573	Soil	FTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0318572_108916241	3300031681	Soil	FTVVQMMFATLVLAAFVAMLVFWQRLVEYCRSLWKTR
Ga0306918_111166482	3300031744	Soil	KDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRTLCKTR
Ga0318537_100225033	3300031763	Soil	IGGIVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0318535_100917541	3300031764	Soil	RIGGVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0318521_105353723	3300031770	Soil	FTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0318566_101458692	3300031779	Soil	FSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0318499_100961093	3300031832	Soil	VAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0310917_100280425	3300031833	Soil	TVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0310917_109263731	3300031833	Soil	GGVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0306919_101436542	3300031879	Soil	SKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0306919_105111501	3300031879	Soil	VGGVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0306919_113230491	3300031879	Soil	KAGGFVAGLFFSEDATSFTVVQMMFATVVLAAFVCLIVFWQSLIEYWRSLWKAR
Ga0306925_109059851	3300031890	Soil	DATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0306925_114601451	3300031890	Soil	VVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0306923_103080143	3300031910	Soil	GGVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLAEYCRSLWKTR
Ga0306923_121448231	3300031910	Soil	FSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRTLCKTR
Ga0306921_100833643	3300031912	Soil	MAAWFFSEDATGFTLVQMGFATLVLAAIVALFVFWQTLVEYYRSVWKT
Ga0306921_103577483	3300031912	Soil	VAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLAEYCRSLWKTR
Ga0310912_105127772	3300031941	Soil	SFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0310912_112295431	3300031941	Soil	SKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRTLCKTR
Ga0310916_101196091	3300031942	Soil	GIVAGWFFSEDATSFTVVQMMFATIVLAAFVALLVCGQSLVEYCRSLWKMR
Ga0310916_106357732	3300031942	Soil	VVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0310913_107195163	3300031945	Soil	ATSFTVVQMMFATLVLAAFVAMLVFWQRLVEYCRSLWKTR
Ga0310913_107636221	3300031945	Soil	VAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0310913_110786361	3300031945	Soil	FSEDATSFTVVQMMFATLVLAAFVALLVFWQKLVEYCRSLWKTR
Ga0306926_106684591	3300031954	Soil	IGGVVAGWFFSKDATSFTVVQMMFATLVLAAFVAMLVFWQRLVEYCRSLWKTR
Ga0306926_123842521	3300031954	Soil	GWFLSKDATSFTVVQMMVASLVLAAFVALLVFWQSLFQYCRSLWKTR
Ga0318530_103320212	3300031959	Soil	ATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKIR
Ga0306922_114951152	3300032001	Soil	LRIGGVVAGWFFSEDATSSTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0310911_107050251	3300032035	Soil	IGGVVAGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0318549_102604671	3300032041	Soil	KDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0318504_100012961	3300032063	Soil	AGWFFSKDATSFTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0306924_103005093	3300032076	Soil	DATSSTVVQMMFATLVLAAFVALLVFWQRLVEYCRSLWKTR
Ga0306924_107098042	3300032076	Soil	GVVAGWFFSKDATSFTVVQMMFATLVLAAFVAMLVFWQRLVEYCRSLWKTR
Ga0306920_1000726511	3300032261	Soil	VMAAWFFSEDATGFTLVQMGFATLVLAAIVALFVFWQTLVEYYRSVWKT
Ga0306920_1035812971	3300032261	Soil	WFFSKDATSFTVVQMMFATLVLAAFVALLVSWQRLVEYCRSLWKTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092007

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences