Metagenome / Metatranscriptome Family F092128

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092128
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	81 residues
Representative Sequence	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTE
Number of Associated Samples	88
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.07 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	97.20 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.262 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (41.121 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.944 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.18% β-sheet: 0.00% Coil/Unstructured: 61.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF09851	SHOCT	5.61
PF17032	zinc_ribbon_15	4.67
PF13412	HTH_24	3.74
PF03706	LPG_synthase_TM	2.80
PF03976	PPK2	1.87
PF06897	DUF1269	1.87
PF00370	FGGY_N	1.87
PF03724	META	0.93
PF13091	PLDc_2	0.93
PF06224	HTH_42	0.93
PF13426	PAS_9	0.93
PF12802	MarR_2	0.93
PF00903	Glyoxalase	0.93
PF01740	STAS	0.93
PF08402	TOBE_2	0.93
PF13738	Pyr_redox_3	0.93
PF00480	ROK	0.93
PF00753	Lactamase_B	0.93
PF06108	DUF952	0.93
PF03537	Glyco_hydro_114	0.93
PF00689	Cation_ATPase_C	0.93
PF12833	HTH_18	0.93
PF12821	ThrE_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	2.80
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.87
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	1.87
COG4803	Uncharacterized membrane protein	Function unknown [S]	1.87
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.93
COG2342	Endo alpha-1,4 polygalactosaminidase, GH114 family (was erroneously annotated as Cys-tRNA synthetase)	Carbohydrate transport and metabolism [G]	0.93
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.93
COG3502	Uncharacterized conserved protein, DUF952 family	Function unknown [S]	0.93
COG3868	Alpha-1,4 polygalactosaminidase, glycosyl hydrolase family GH114	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.26 %
Unclassified	root	N/A	2.80 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	16.82 %
Unclassified	root	N/A	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.41 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	8.41 %
Unclassified	root	N/A	2.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	6.54 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.61 %
Unclassified	root	N/A	2.80 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
unclassified Thermomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales	0.93 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
asterids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Ericales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → Ericales	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Theaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → Ericales → Theaceae	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	4.67 %
Unclassified	root	N/A	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Gordonia	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → Ericales → Theaceae → Gordonia	0.93 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.93 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10110714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300000956\|JGI10216J12902_108635069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	743	Open in IMG/M
3300000956\|JGI10216J12902_109016399	Not Available	1270	Open in IMG/M
3300002568\|C688J35102_120553099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1173	Open in IMG/M
3300003993\|Ga0055468_10293498	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300004114\|Ga0062593_103308001	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300004157\|Ga0062590_102557089	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300004643\|Ga0062591_100427202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1107	Open in IMG/M
3300004643\|Ga0062591_101170945	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → Ericales → Theaceae → Gordonia	746	Open in IMG/M
3300005337\|Ga0070682_101300406	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005344\|Ga0070661_101345691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300005345\|Ga0070692_11175940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300005366\|Ga0070659_101996070	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005367\|Ga0070667_101609978	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005441\|Ga0070700_100893899	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300005441\|Ga0070700_101089497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	662	Open in IMG/M
3300005456\|Ga0070678_101075464	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300005456\|Ga0070678_102155978	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300005456\|Ga0070678_102407882	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005457\|Ga0070662_100716709	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300005466\|Ga0070685_10088283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1872	Open in IMG/M
3300005543\|Ga0070672_100685256	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300005544\|Ga0070686_100195180	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300005544\|Ga0070686_101960825	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005549\|Ga0070704_101059759	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300005563\|Ga0068855_101841662	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005764\|Ga0066903_104582993	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005840\|Ga0068870_11029833	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005937\|Ga0081455_10271372	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300006358\|Ga0068871_102124747	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300006606\|Ga0074062_12732653	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006852\|Ga0075433_11829415	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009098\|Ga0105245_10083681	All Organisms → cellular organisms → Bacteria	2921	Open in IMG/M
3300009098\|Ga0105245_12369947	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300009156\|Ga0111538_10008529	All Organisms → cellular organisms → Bacteria	13755	Open in IMG/M
3300009156\|Ga0111538_11195645	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300009553\|Ga0105249_11118846	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300009789\|Ga0126307_10343715	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300010036\|Ga0126305_10791036	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300010041\|Ga0126312_10854446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	662	Open in IMG/M
3300010041\|Ga0126312_11082702	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010401\|Ga0134121_10649480	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300011119\|Ga0105246_10643127	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300012212\|Ga0150985_119467532	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300012469\|Ga0150984_101482862	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300012469\|Ga0150984_123567520	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300012891\|Ga0157305_10064121	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300012897\|Ga0157285_10046910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1039	Open in IMG/M
3300012899\|Ga0157299_10232569	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012901\|Ga0157288_10316204	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012902\|Ga0157291_10170491	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012906\|Ga0157295_10344904	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012911\|Ga0157301_10331498	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300012958\|Ga0164299_10599017	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300012960\|Ga0164301_10271711	Not Available	1125	Open in IMG/M
3300012960\|Ga0164301_11307631	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300012961\|Ga0164302_11728564	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300012985\|Ga0164308_10868198	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300012988\|Ga0164306_11257445	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300013297\|Ga0157378_11750879	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300013307\|Ga0157372_12844907	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300013308\|Ga0157375_13118076	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300014326\|Ga0157380_11689847	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300014326\|Ga0157380_12024383	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300014326\|Ga0157380_12790909	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300014745\|Ga0157377_10043105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	2510	Open in IMG/M
3300014745\|Ga0157377_10302726	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300014745\|Ga0157377_11772091	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300015077\|Ga0173483_10962375	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300015201\|Ga0173478_10197855	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300015371\|Ga0132258_11306043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1833	Open in IMG/M
3300015373\|Ga0132257_104055335	Not Available	533	Open in IMG/M
3300015374\|Ga0132255_104372165	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300018432\|Ga0190275_10188354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1940	Open in IMG/M
3300018432\|Ga0190275_10895216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	955	Open in IMG/M
3300018469\|Ga0190270_10906616	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300018469\|Ga0190270_11011726	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300018476\|Ga0190274_10272212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1553	Open in IMG/M
3300019362\|Ga0173479_10515647	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300022899\|Ga0247795_1082480	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300025567\|Ga0210076_1034478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300025900\|Ga0207710_10539994	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300025926\|Ga0207659_11095048	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300025931\|Ga0207644_11773694	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300025936\|Ga0207670_10737176	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300025940\|Ga0207691_10732614	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300025940\|Ga0207691_11163142	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300025944\|Ga0207661_11949412	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300025960\|Ga0207651_11744598	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300025961\|Ga0207712_10634677	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300025981\|Ga0207640_10920653	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300026023\|Ga0207677_11485787	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300026023\|Ga0207677_12161577	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300026067\|Ga0207678_11998599	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300026078\|Ga0207702_11063736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300026934\|Ga0207816_1030823	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300027330\|Ga0207777_1014733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	1577	Open in IMG/M
3300027552\|Ga0209982_1025265	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300028608\|Ga0247819_10735347	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300028802\|Ga0307503_10384547	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300028810\|Ga0307294_10255491	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300031548\|Ga0307408_101529508	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300031943\|Ga0310885_10212752	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300031944\|Ga0310884_11024777	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031995\|Ga0307409_100945861	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300032004\|Ga0307414_12219940	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300032122\|Ga0310895_10114522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1119	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.27%
Host-Associated	Host-Associated	46.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.40%
Plants	Host-Associated → Plants	46.73%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.02%
Marine	Environmental → Aquatic → Marine	1.87%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.63%
Loam	Environmental → Terrestrial → Soil → Loam	13.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.80%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026934	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_101107142	3300000891	Soil	MATKADFTEQEWDALRKGVSGAGLLVSLSDRDFTDSFGEAGALAKYLSGQTVASSSQLVRDLAHG
JGI10216J12902_1086350693	3300000956	Soil	MATKQDFTEAEWAALEKGVTGTGLLVSLSDRDFTDTFGEAGAMAKYLAGQQAAASSEVLRELSKPHGTGFGLTS
JGI10216J12902_1090163991	3300000956	Soil	MATRNDFTEAEWEGLQKGITGSGMLASLSDRDLTDSFGEAGAMAKYLAGQQVAGSTDFIREVAKARGTGFGLTTSPD
C688J35102_1205530992	3300002568	Soil	MATKQDFTEAEWATLQKGVTGSGMLVSLSDRDFTDSFGEASAMGKFLSGQQLTGGTDLVREVAKVHGTGFGLT
Ga0055468_102934982	3300003993	Natural And Restored Wetlands	VATRHDFSDDEWAALQKGLIGSGMLVSVSDRDLTDTFGEAGALGKYLAGQQVAATSELMRELA
Ga0062593_1033080011	3300004114	Soil	MTTKTDFTESEWDALQKGITGSGLLVSLSDRDLTDTFGEVGAMTKYLAGQQVAGSSELIRELAKAHGTGFGLTTSPDRVRSET
Ga0062590_1025570892	3300004157	Soil	MATKTDFTEAEWDALEKGITGSGMLVSLADRDFTDSFGEAGAMAKYLQGQQVAGPSELLRELAKAHG
Ga0062591_1004272022	3300004643	Soil	VATRQDFTEEEWAALQKGLMGSGALVSVSDRDLTDTFGEASALSKFLAGQQVAATNELVRELAKSRGTGFGLTTSPERMRTETLAALTSAVGML
Ga0062591_1011709451	3300004643	Soil	MASKTDFTEDEWAALQKGVTGSAMLVSLSDRDFTDSFGEASALAKHLAGQQVAATSELIRELAKPHGTGFGLTAGPDK
Ga0070682_1013004061	3300005337	Corn Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLMRELAKVRGTGFGLTTPPDRLRNETIAAVTASVELLATKSPDDVEPYRA
Ga0070661_1013456912	3300005344	Corn Rhizosphere	MTTKTDFTESEWTALQKGITGSGLLVSLSDRDLSDTFGEVGAMAKYLSGQQVAASSELIRELAKAHGTGFGLTTSPERVRSE
Ga0070692_111759401	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAGQQVAATSELMRELAKTRGTGFGLTTSP
Ga0070659_1019960701	3300005366	Corn Rhizosphere	MATKQDFSEQEWATLERSISGTGLLVSLSDRDLTDTFGEVGAMAKYLAGQQVAASSELLRELAKAHHT
Ga0070667_1016099782	3300005367	Switchgrass Rhizosphere	MATRADFTDGEWAALQKGLTGSALLVSLSDRDLSDTFGEVGALAKYLQGQQVAGSSELMREIAKTHGTGFGFATPPDKMRGETVAAIGT
Ga0070700_1008938992	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MATKADFTEDEWHVLQRGVTGSGVLVSLSDRDLTDSFGEAGAMGKYLAGAQVASASPLVRDLAKTHGTGFGL
Ga0070700_1010894971	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAGQQVAATSELMRELAKTRGTGFGLTTSPDRMRSETLAALSSAVGTLGAKA
Ga0070678_1010754641	3300005456	Miscanthus Rhizosphere	MATRQDFTDDEWTRLQKGVTGSAMLVSLSDRDFTDTFGEVGAMTKYLAGQQAAAASGLVRELAKTHSTGFGLTTSPAQMH
Ga0070678_1021559781	3300005456	Miscanthus Rhizosphere	VATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAGQQVAATSELMRELAKTRGTGFGLTTSPDRMRTETLAALSSAVGTL
Ga0070678_1024078821	3300005456	Miscanthus Rhizosphere	MATKQDFSEAEWEALQRGVTGSGMLVSLSDRDFTDSFGEASALGKFLAGQQVAGPTDLVRQVAKTKGTGFGLTSSPDKVRTETLDSL
Ga0070662_1007167092	3300005457	Corn Rhizosphere	MATKADFTEDEWHVLQRGVTGSGVLVSLSDRDLTDSFGEAGAMGKYLAGAQVASASPLVRDLAKTHGTGFGLTASPDKVR
Ga0070685_100882833	3300005466	Switchgrass Rhizosphere	VATRQDFTEEEWAALQKGLMGSGALVSVSDRDLTDTFGEASALSKFLAGQQVAATNELVRELAKSRGTGFGLTTSPERMRTETLAALAT
Ga0070672_1006852561	3300005543	Miscanthus Rhizosphere	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLTDSFGEAGAMSKYLAGAQVASASPLVRDLAKAHGTGFGLTASPDKVRG
Ga0070686_1001951801	3300005544	Switchgrass Rhizosphere	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLTDSFGEAGAMSKYLAGAQVASASPLVRDLAKAHGTGFGLTASPDRVRAETMNAL
Ga0070686_1019608251	3300005544	Switchgrass Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDRLRNETIAA
Ga0070704_1010597592	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLTDSFGEAGAMSKYLAGAQVASASPLVRDLAKAHGTGFGLTASPDKVR
Ga0068855_1018416622	3300005563	Corn Rhizosphere	MATKQDFSEQEWATLERSISGTGLLVSLSDRDLTDTFGEVGAMAKYLAGQQVAASSELLRELAKAHHTGFGLTS
Ga0066903_1045829932	3300005764	Tropical Forest Soil	MATRSDFTDDEWAALQKGVTGSGMLVSLSDHDLRDSFGEAGALAKYLSGQHVAAASPLIRELAKTHGTGFGLAVELEPGRRV
Ga0068870_110298332	3300005840	Miscanthus Rhizosphere	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTETMAALATSVA
Ga0081455_102713723	3300005937	Tabebuia Heterophylla Rhizosphere	MATKTDFTEEEWTALQRGVTGSGMLVSLSDRDFTDSFGEASAMGKYLAGQQVAAASPLVREIATAHGTGFGFTTSPD
Ga0068871_1021247471	3300006358	Miscanthus Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDRLRNETIAAVTASVELLGTKSP
Ga0074062_127326531	3300006606	Soil	MATKADFTEAEWTTLERGVTGSSVLVSLADRDFTDTFGEVSAMTHYLAGQQVAASSELIRQLAKVHGTGFGVTTSPDKV
Ga0075433_118294151	3300006852	Populus Rhizosphere	MATRQDFTDEEGAALQKGLTGSGMLVSVSDRDLTDTFGEAGALAKFLAGQQVAATNELVRELAKTRGTGFGLTDSPDKVRTETMAA
Ga0105245_100836811	3300009098	Miscanthus Rhizosphere	MATKADFTEDEWHVLQRGVTGSGVLVSLSDRDLTDSFGEAGAMGKYLAGAQVASASPLVRDLAKTHGTGFGLTASPDKVRAETMEALRTSVATL
Ga0105245_123699472	3300009098	Miscanthus Rhizosphere	VATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAGQQVAATGELMRELAKTRGTGFGLTTSPDRMRSETLAALSS
Ga0111538_1000852913	3300009156	Populus Rhizosphere	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTETMAALATSVATLGQK
Ga0111538_111956452	3300009156	Populus Rhizosphere	MASKTDFTEDEWAALQKGVTGSAMLVSLSDRDFTDSFGEASALAKHLAGQQVAATSELIRELAKPHGTGFGLTAGPDKVRGETME
Ga0105249_111188462	3300009553	Switchgrass Rhizosphere	VATRQDFTDEEWAALQKGLMGSGALVSVSDRDLTDTFGEASALSKFLAGQQVAATNELVRELAKSRGTGF
Ga0126307_103437152	3300009789	Serpentine Soil	MATKQDFSDEEWETLQRGVTGSGMLVSLSDRDFTDSFGQAGALGKYLAGQQVEGATDLIREVAK
Ga0126305_107910362	3300010036	Serpentine Soil	MATKQDFSEAEWEALQRGVTGSGMLVSLSDRDFTDSFGEASALGKFLAGQQVAGATDFVREVAKTKGTGFGLTTS
Ga0126312_108544461	3300010041	Serpentine Soil	MATRQDFTEDEWATLQRGVTGSGMLVSISDRDFTDTFGEAGAMGKFLSGQHTAAGSALIREIAKAKGSGFGLTASPDA
Ga0126312_110827022	3300010041	Serpentine Soil	MATKQDFSDEEWETLQRGVTGSGMLVSLSDRDFTDSFGEAGALGKYLAGQQVAGATDLIREVAKTRGTGFGLTSSPDEVRGRTMDALRTSVAFLEAKHPDEVEPY
Ga0134121_106494803	3300010401	Terrestrial Soil	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLSDSFGEAGAMSKYLAGAQVASASPLVRDLAKAHGTGFGLTASP
Ga0105246_106431271	3300011119	Miscanthus Rhizosphere	VATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAGQQVAATSELMRELAKTRGTGFG
Ga0150985_1194675322	3300012212	Avena Fatua Rhizosphere	MASRTDFTDDEWATLQKGITGSAMLVSLSDRDLSDTFGEVGSMAKFLAGQQTAAPTQLARELAKTKGSGFGFGTSPDKLR
Ga0150984_1014828621	3300012469	Avena Fatua Rhizosphere	VATKADFDEQEWDAIQKGVTGAGMLVSLSDRDFTDTFGEVGAMAKYLAGQHVASSSDLIRELAKTKGSGFGLGTSTDKLRAE
Ga0150984_1235675201	3300012469	Avena Fatua Rhizosphere	MATKQDFTEQEWAALERSISGTGLLVSLADRDFTDTFGEVGAMAKYLSGQQVAASSELIRELAKSHHTGFGLMSSAEKV
Ga0157305_100641212	3300012891	Soil	MATRQDFSEEELTALQRGLTGSGMLVSLSDRDFTDSFGEASALGKYLAGQQVAGATDFVREVAKT*
Ga0157285_100469102	3300012897	Soil	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTE
Ga0157299_102325691	3300012899	Soil	MATKTDFTDDEWTALQRGVTGSAMLVSLADRDFTDTFGEAGAMAKFLQGQQMAQSSELIREVVKTHGTGFGLTTSPENLRAETM
Ga0157288_103162042	3300012901	Soil	MATKADFTEDEWHVLQRGVTGSGVLVSLSDRDLTDSFGEAGAMGKYLAGAQVASASPLVRDLAKTH
Ga0157291_101704911	3300012902	Soil	MATKQDFTDAQWAMLQKGITGSGMLVSLSDRDFSDSFGEAGAMGKYLSEQRLTGATDLVRELAH
Ga0157295_103449041	3300012906	Soil	MATKQDFTEAEWAALHRGVMGTGMLVSLSDRDFTDMFGEVGAMGKFLAGQQTASSSPLVRDLAREHGTGFGMTAPPDRVRS
Ga0157301_103314982	3300012911	Soil	MATKADFTEDEWHVLQRGVTGSGVLVSLSDRDLTDSFGEAGAMGKYLAGAQVASASPLVRDLAKTHGTGFGLTAS
Ga0164299_105990172	3300012958	Soil	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLTDSFGEAGAMSKYLAGAQVASASPLVRDLAKAHGTGFGLTASPD
Ga0164301_102717111	3300012960	Soil	MTTKTDFTEPEWAALQKGITGSGFLVSLSDRDLSDTFGEVGAMAKYLSGQQVAGSSELIRELAKAHGTGFGL
Ga0164301_113076312	3300012960	Soil	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLSDSFGEAGAMSKYLAGAQVASASPLVRDLAKTRGTGFGLTASPD
Ga0164302_117285641	3300012961	Soil	MATKQDFTEQEWASLERSISGTGLLVSLADRDFTDTFGEVGAMAKYLAGQQVAASSELLRELAKSHHTGFGLTSS
Ga0164308_108681982	3300012985	Soil	MATRQDFTDDEWTRLQKGVTGSAMLVSLSDRDFTDTFGEVGAMTKYLAGQQAAAASGLIRELAKTHGTGFGLTTSPAQMHADTM
Ga0164306_112574451	3300012988	Soil	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFADSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDR
Ga0157378_117508791	3300013297	Miscanthus Rhizosphere	MATKQDFSEQEWATLERSISGTGLLVSLADRDFTDTFGEVGAMAKYLAGQQVAASSELLRELAKAHHTGFGLTSSAEKVRSETLDAVK
Ga0157372_128449072	3300013307	Corn Rhizosphere	MATRQDFTDDEWTRLQKGVTGSAMLVSLSDRDFTDTFGEVGAMTKYLAGQQAAAASGLVRELAKTHSTGFGLT
Ga0157375_131180762	3300013308	Miscanthus Rhizosphere	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLFFCTDTATTE
Ga0157380_116898471	3300014326	Switchgrass Rhizosphere	MATKQDFSEVEWAALQRGITGSGMLVSLSDRDFTDSFGEASALGKYLAGQQVAGATDFVREVAKT
Ga0157380_120243831	3300014326	Switchgrass Rhizosphere	MATRQDFSDEEWAALQRGLTGSGMLVSLSDRDFTDSFGEASALGKFLAGQQVAGATDFVREVAKTKGTGFGLTTKPDTVRIETM
Ga0157380_127909091	3300014326	Switchgrass Rhizosphere	MATKTDFTEEEWDALQKGITGSAMLVSLSDRDFTDSFGEVGAMAKYLQGQQVAGPSDLIRELAKTHGTGFGLGTSPDKLRDGTVAALQ
Ga0157377_100431053	3300014745	Miscanthus Rhizosphere	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTETMAALATSVATLGQ
Ga0157377_103027261	3300014745	Miscanthus Rhizosphere	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLTDSFGEAGAMSKYLAGAQVASASPLVRDLAKGHGTGFGLTASPDKVRAET
Ga0157377_117720912	3300014745	Miscanthus Rhizosphere	VATRQDFTDEEWAALQKGLMGSGALVSVSDRDLTDTFGEASALSKFLAGQQVAATNELVRELAKSRGTGFGLTT
Ga0173483_109623752	3300015077	Soil	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTETMAALATSVATLG
Ga0173478_101978552	3300015201	Soil	MATKQDFSETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDRLRNETIAAVTASVELLKAKSPDDVE
Ga0132258_113060431	3300015371	Arabidopsis Rhizosphere	VATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAGQQVAATSELMRELAKTRGT
Ga0132257_1040553352	3300015373	Arabidopsis Rhizosphere	MATKQDFTEQEWATLERSISGTGLLVSLADRDLTDTFGEVGAMAKYLAGQQVAASSELLRELAKSHHTGFGLTSSAEKVRDETLDAVK
Ga0132255_1043721652	3300015374	Arabidopsis Rhizosphere	MAARTDFTDAEWSALQKGVTGSGLLVSLSDRDFSDTFGEVSAMAKHLADQRVAASSELVRELAAVHGTGFGLTSSPEKVEEETIQALQAAK
Ga0190275_101883541	3300018432	Soil	MATKADFTDEEWAFLHKGAAGSAMLVSLSDRDFTDTFGEAGAMAKYSASQQTDAAPELIRELARVRGTGF
Ga0190275_108952161	3300018432	Soil	MTQPTDASGVGATPTATRADFTEAEWAALQKGITGSAMLVSLADRDFTDSFGEVGALAKYLQGQQVAVASGLVRE
Ga0190270_109066162	3300018469	Soil	MEDGKPVATRQDFTDEEWAALQKGLMGSGTLVSVSDRDLTDTFGEASALGKYLAGQQVAATNELVRELAKTRGTTFGLTTGPEQMRAETIAALTSAVGT
Ga0190270_110117262	3300018469	Soil	MATKTDFTEDEWDALQKGITGSAMLVSLSDRDFTDSFGEVGAMAKYLQGQQVAGPSDLIRELAKTHG
Ga0190274_102722121	3300018476	Soil	MATRQDFSDEEWATLQRGLTGSGMLVSLSDRDFTDSFGEASALGKFLAGQQVAGATDFVREVAKTKGTGFG
Ga0173479_105156472	3300019362	Soil	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDRLRNETI
Ga0247795_10824801	3300022899	Soil	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGF
Ga0210076_10344783	3300025567	Natural And Restored Wetlands	VATRHDFTDEEWSALQKGLMGSGMLVSVSDRDLTDTFGEAGALGKFLSGRQVAATSELIREL
Ga0207710_105399942	3300025900	Switchgrass Rhizosphere	MATKTDFTEQEWSALQKGMTGSGMLVSLSDRDLSDSFGEASAMGKYLAGAQVASTSELVRELAKTHGTGF
Ga0207659_110950481	3300025926	Miscanthus Rhizosphere	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTETIAALATS
Ga0207644_117736942	3300025931	Switchgrass Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDRLRNETIAAV
Ga0207670_107371762	3300025936	Switchgrass Rhizosphere	VATRQDFTDEEWAALQKGLMGSGALVSVSDRDLTDTFGEASALSKFLAGQQVAATNELVRELAKSRGTGFGLTTSP
Ga0207691_107326142	3300025940	Miscanthus Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRP
Ga0207691_111631421	3300025940	Miscanthus Rhizosphere	VATRQDFTDEEWAALQKGLMGSGALVSVSDRDLTDTFGEASALSKFLAGQQVAATNELVRELAKS
Ga0207661_119494121	3300025944	Corn Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKV
Ga0207651_117445982	3300025960	Switchgrass Rhizosphere	MATKADFTEDEWHTLQRGMTGSGMLVSLSDRDLTDSFGEAGAMSKYLAGAQVASASPLVRDLAKAHGTGFGL
Ga0207712_106346771	3300025961	Switchgrass Rhizosphere	MATKADFTEDEWHVLQRGVTGSGVLVSLSDRDLTDSFGEAGAMGKYLAGAQVASASPLVRDLAKTHGTGFGLTA
Ga0207640_109206531	3300025981	Corn Rhizosphere	MATKQDFSEAEWEALQRGVTGSGMLVSLSDRDFTDSFGEASALGKFLAGQQVAGPTDLVRQVAKTKGTGFGLTSSPDKVRTATRSSRSSSSPTPRARTPPT
Ga0207677_114857871	3300026023	Miscanthus Rhizosphere	MTTKTDFTESEWTALQKGITGSGFLVSLSDRDLTDTFGEVGAMAKYLAGQQVAGSSEVIRELAKAHGTGFGLTTSPERVRSETLE
Ga0207677_121615772	3300026023	Miscanthus Rhizosphere	MATKQDFTETEWATLQKGITGSGMLVSLSDRDFTDSFGEAGAMGKYLSGQQLTGATDLIRELAKVRGTGFGLTTPPDRLRNETIAAVTASVELLGTK
Ga0207678_119985991	3300026067	Corn Rhizosphere	MATKQDFTEQEWASLERSISGTGLLVSLADRDFTDTFGEVGAMAKYLSGQQVAASSELLRELAKSHHTGFGLTSSAEKVRTETLDAVKS
Ga0207702_110637361	3300026078	Corn Rhizosphere	MATRQDFTDDEWTRLQKGVTGSAMLVSLSDRDFTDTFGEVGAMTKYLAGQQAAAASGLVRELAKTHSTGFGLTTSPAQMHADTM
Ga0207816_10308231	3300026934	Tropical Forest Soil	MATKQDFSEAEWETLRKAVTGSGMLVSLSDRDLSDSFGEAGAMAKYLAGQQMAAPSELLRALAKTKGTGFGIGSPP
Ga0207777_10147332	3300027330	Tropical Forest Soil	MATRADFSDDEWKTLQRGLTGAGMLVSMSDRDLSDSFGEAGAMGKYLSGQQMAGSSELIRAIAKTKGTGFGLGTPPD
Ga0209982_10252651	3300027552	Arabidopsis Thaliana Rhizosphere	MEDGGHVATRQDFTDEEWATLQKGLGGSGALVSVSDRDFTDTFGEASALAKYLAAQQVAATSELMRELAKTRGTGFGLTTSPDRMRIETLAALSSSIETLGAKAPE
Ga0247819_107353472	3300028608	Soil	MATKQDFGEQEWATLERSISGTGLLVSLSDRDFTDTFGEVGAMAKYLAGQQVAASSELLRELAKAHHTGFGLTSSAEKVRTETLE
Ga0307503_103845471	3300028802	Soil	MATKTDFTKAEWDALEQGITGSGMLVSLADRDFTDSFGEAGAMAKYLQGQQVAGTSQLMRELAKTHGTGFGLGTSPEKMRAGTFAALQSS
Ga0307294_102554911	3300028810	Soil	MATKQDFSEAEWEALQRGITGSGMLVSLSDRDFTDSFGEASALGKFLAGQQVAGATDFVREVAKTKGTGFGLTTSPDTVRTETMDALRA
Ga0307408_1015295081	3300031548	Rhizosphere	VATRNDFSDDEWTALQKGLMGSGMLVSVSDRDLTDTFGEAGALGKYLAGQQVAATSDLMRELARTRGTGFGLTASPDEIRTETMAALATAVAALQAKAPEDVA
Ga0310885_102127521	3300031943	Soil	MATKQDFTEAEWAALEKGVTGTGLLVSLSDRDFTDTFGEAGAMAKYLAGQQAAASSEVLRELSKPHGTGF
Ga0310884_110247772	3300031944	Soil	MATKTDFTEQEWESLRKGVSGAGMLVSLSDRDFTDSFGEVSALAKHLAGQQVAATSELIRELAKPHGTGFGLT
Ga0307409_1009458612	3300031995	Rhizosphere	VATRNDFSDDEWAALQKGLMGSGMLVSVSDRDLTDTFGEAGALGKYLAGQQVVATSDLMRELAKTRGTGFGLTASPDE
Ga0307414_122199402	3300032004	Rhizosphere	VATRNDFSDDEWTALQKGLMGSGMLVSVSDRDLTDTFGEAGALGKYLAGQQVAATSELMRELARTRGTGFGLT
Ga0310895_101145222	3300032122	Soil	MATRQDFTDEEWAALQKGLTGSGMLVSVSDRDFTDTFGEAGALAKYLAGQQTAATNELVRELAKTRGTGFGLTDSPDKVRTETMAALATSVATLGQKAPDDLGPYRELV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092128

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences