Metagenome Family F092308

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092308
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	66 residues
Representative Sequence	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Number of Associated Samples	57
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	14.02 %
% of genes from short scaffolds (< 2000 bps)	76.64 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.617 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (22.430 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (30.841 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.04% β-sheet: 0.00% Coil/Unstructured: 65.96%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13401	AAA_22	9.35
PF04366	Ysc84	5.61
PF01402	RHH_1	4.67
PF13502	AsmA_2	2.80
PF05036	SPOR	2.80
PF13505	OMP_b-brl	1.87
PF07589	PEP-CTERM	1.87
PF12146	Hydrolase_4	1.87
PF03972	MmgE_PrpD	0.93
PF00072	Response_reg	0.93
PF02604	PhdYeFM_antitox	0.93
PF02371	Transposase_20	0.93
PF13412	HTH_24	0.93
PF10576	EndIII_4Fe-2S	0.93
PF00589	Phage_integrase	0.93
PF01738	DLH	0.93
PF03548	LolA	0.93
PF01464	SLT	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	5.61
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.93
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.93
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.14 %
Unclassified	root	N/A	37.38 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	49.53 %
Unclassified	root	N/A	37.38 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	49.53 %
Unclassified	root	N/A	37.38 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	20.56 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	13.08 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4.67 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Deltaproteobacteria bacterium ADurb.Bin135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	0.93 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	13.08 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4.67 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.93 %
Deltaproteobacteria bacterium ADurb.Bin135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	13.08 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4.67 %
Deltaproteobacteria bacterium RBG_16_48_10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.87 %
Sinorhizobium meliloti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	0.93 %
Deltaproteobacteria bacterium ADurb.Bin135	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000311\|WSSedA1Ba3DRAFT_1101659	Not Available	551	Open in IMG/M
3300002961\|JGI11641J44799_10075537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	953	Open in IMG/M
3300003859\|Ga0031653_10170298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	569	Open in IMG/M
3300003859\|Ga0031653_10200713	Not Available	522	Open in IMG/M
3300003861\|Ga0031654_10054831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1119	Open in IMG/M
3300005254\|Ga0068714_10113438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1299	Open in IMG/M
3300005832\|Ga0074469_10650307	All Organisms → cellular organisms → Bacteria	17182	Open in IMG/M
3300006224\|Ga0079037_100332454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1420	Open in IMG/M
3300006224\|Ga0079037_100435102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1248	Open in IMG/M
3300009037\|Ga0105093_10388240	Not Available	759	Open in IMG/M
3300009053\|Ga0105095_10048998	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2272	Open in IMG/M
3300009053\|Ga0105095_10433246	Not Available	727	Open in IMG/M
3300009082\|Ga0105099_10085364	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1713	Open in IMG/M
3300009091\|Ga0102851_10273601	Not Available	1634	Open in IMG/M
3300009091\|Ga0102851_12644806	Not Available	575	Open in IMG/M
3300009111\|Ga0115026_11070224	Not Available	649	Open in IMG/M
3300009131\|Ga0115027_10136376	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300009131\|Ga0115027_11600447	Not Available	538	Open in IMG/M
3300009171\|Ga0105101_10374992	Not Available	692	Open in IMG/M
3300009760\|Ga0116131_1043291	Not Available	1485	Open in IMG/M
3300010391\|Ga0136847_10549563	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3823	Open in IMG/M
3300012931\|Ga0153915_10167299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2394	Open in IMG/M
3300012931\|Ga0153915_10212252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2129	Open in IMG/M
3300012931\|Ga0153915_10372330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	1611	Open in IMG/M
3300012931\|Ga0153915_10767054	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1117	Open in IMG/M
3300012931\|Ga0153915_11034764	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300012931\|Ga0153915_11460389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	799	Open in IMG/M
3300012931\|Ga0153915_11970684	Not Available	683	Open in IMG/M
3300012931\|Ga0153915_12132779	Not Available	656	Open in IMG/M
3300012964\|Ga0153916_10067905	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3275	Open in IMG/M
3300012964\|Ga0153916_10107450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2656	Open in IMG/M
3300012964\|Ga0153916_10349074	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin135	1528	Open in IMG/M
3300012964\|Ga0153916_11504118	Not Available	749	Open in IMG/M
3300012964\|Ga0153916_12823634	Not Available	548	Open in IMG/M
3300012964\|Ga0153916_13370809	Not Available	502	Open in IMG/M
3300017929\|Ga0187849_1126048	Not Available	1056	Open in IMG/M
3300017939\|Ga0187775_10016575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	1964	Open in IMG/M
3300017939\|Ga0187775_10035311	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300017939\|Ga0187775_10475422	Not Available	530	Open in IMG/M
3300017944\|Ga0187786_10013564	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300017944\|Ga0187786_10321857	Not Available	643	Open in IMG/M
3300017961\|Ga0187778_10217552	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1220	Open in IMG/M
3300017961\|Ga0187778_10588223	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	745	Open in IMG/M
3300017966\|Ga0187776_10037964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2704	Open in IMG/M
3300017966\|Ga0187776_10312766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	1025	Open in IMG/M
3300017966\|Ga0187776_10314563	Not Available	1022	Open in IMG/M
3300017966\|Ga0187776_10330446	Not Available	1000	Open in IMG/M
3300017966\|Ga0187776_10485915	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300018032\|Ga0187788_10074765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1190	Open in IMG/M
3300018055\|Ga0184616_10065226	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1246	Open in IMG/M
3300018059\|Ga0184615_10217256	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1074	Open in IMG/M
3300018062\|Ga0187784_10266078	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1394	Open in IMG/M
3300018064\|Ga0187773_10030367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2379	Open in IMG/M
3300018064\|Ga0187773_10075762	Not Available	1607	Open in IMG/M
3300018064\|Ga0187773_10528491	Not Available	709	Open in IMG/M
3300018064\|Ga0187773_10660662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	647	Open in IMG/M
3300018068\|Ga0184636_1021298	Not Available	1990	Open in IMG/M
3300018086\|Ga0187769_10014719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5077	Open in IMG/M
3300018088\|Ga0187771_10181138	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1743	Open in IMG/M
3300018088\|Ga0187771_10645888	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	897	Open in IMG/M
3300018089\|Ga0187774_10628850	Not Available	699	Open in IMG/M
3300018089\|Ga0187774_10786589	Not Available	641	Open in IMG/M
3300018090\|Ga0187770_10152447	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1761	Open in IMG/M
3300022208\|Ga0224495_10394141	Not Available	543	Open in IMG/M
3300025164\|Ga0209521_10468624	Not Available	668	Open in IMG/M
3300025174\|Ga0209324_10090017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2104	Open in IMG/M
3300026353\|Ga0256818_1016529	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	659	Open in IMG/M
3300027713\|Ga0209286_1001825	All Organisms → cellular organisms → Bacteria	6772	Open in IMG/M
3300027715\|Ga0208665_10069342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1055	Open in IMG/M
3300027723\|Ga0209703_1324333	Not Available	542	Open in IMG/M
3300027731\|Ga0209592_1025068	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2246	Open in IMG/M
3300027740\|Ga0214474_1103142	Not Available	1075	Open in IMG/M
3300027740\|Ga0214474_1110750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1033	Open in IMG/M
3300027811\|Ga0256868_10011520	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4273	Open in IMG/M
3300027811\|Ga0256868_10106876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1241	Open in IMG/M
3300027877\|Ga0209293_10025602	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300027877\|Ga0209293_10106005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1280	Open in IMG/M
3300027887\|Ga0208980_10046975	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	2513	Open in IMG/M
3300027900\|Ga0209253_10033557	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	4297	Open in IMG/M
3300027900\|Ga0209253_10113334	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2216	Open in IMG/M
3300027900\|Ga0209253_10177545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1712	Open in IMG/M
3300027900\|Ga0209253_10481128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	929	Open in IMG/M
3300027902\|Ga0209048_10057009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3157	Open in IMG/M
3300030613\|Ga0299915_10127632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1837	Open in IMG/M
3300030613\|Ga0299915_10207945	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1378	Open in IMG/M
3300031949\|Ga0214473_10053750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4716	Open in IMG/M
3300031949\|Ga0214473_11214882	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_48_10	779	Open in IMG/M
3300032069\|Ga0315282_10027357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7458	Open in IMG/M
3300032069\|Ga0315282_10028669	All Organisms → cellular organisms → Bacteria	7173	Open in IMG/M
3300033414\|Ga0316619_11839962	Not Available	549	Open in IMG/M
3300033433\|Ga0326726_10117177	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	2401	Open in IMG/M
3300033433\|Ga0326726_10495228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1168	Open in IMG/M
3300033480\|Ga0316620_10157957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1831	Open in IMG/M
3300033480\|Ga0316620_10669286	Not Available	983	Open in IMG/M
3300033480\|Ga0316620_11778759	Not Available	611	Open in IMG/M
3300033480\|Ga0316620_12231519	Not Available	544	Open in IMG/M
3300033480\|Ga0316620_12294484	Not Available	537	Open in IMG/M
3300033486\|Ga0316624_11807666	Not Available	565	Open in IMG/M
3300033486\|Ga0316624_12136465	Not Available	521	Open in IMG/M
3300033489\|Ga0299912_10387035	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1150	Open in IMG/M
3300033489\|Ga0299912_10849573	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	693	Open in IMG/M
3300033489\|Ga0299912_10990634	Not Available	627	Open in IMG/M
3300033513\|Ga0316628_100213027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2332	Open in IMG/M
3300033513\|Ga0316628_101062020	Not Available	1076	Open in IMG/M
3300033513\|Ga0316628_101496194	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	899	Open in IMG/M
3300033513\|Ga0316628_104372198	Not Available	501	Open in IMG/M
3300034090\|Ga0326723_0325912	Not Available	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	49.53%
Terrestrial	Environmental → Terrestrial	49.53%
Lab Enrichment	Engineered → Lab Enrichment	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.79%
Freshwater	Environmental → Aquatic → Freshwater	42.06%
Marine	Environmental → Aquatic → Marine	3.74%
Sediment	Environmental → Aquatic → Sediment	3.74%
Peat	Environmental → Terrestrial → Peat	2.80%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.93%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.93%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	33.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	12.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.15%
Lentic	Environmental → Aquatic → Freshwater → Lentic	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.74%
Lake	Environmental → Aquatic → Freshwater → Lake	2.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Sediment	Environmental → Aquatic → Marine → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	33.64%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	17.76%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	12.15%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	7.48%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	6.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.80%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	22.43%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	13.08%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	11.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.48%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	6.54%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.67%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.80%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.93%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.93%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.93%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000311	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003859	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300005254	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG	Engineered	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300026353	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR4	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027740	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq	Environmental	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedA1Ba3DRAFT_11016592	3300000311	Wetland	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNXWKEDRQVQLFLPLSKKKGG*
JGI11641J44799_100755371	3300002961	Wetland	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNKWKEDRQVQLFLPLSKKKGG*
Ga0031653_101702981	3300003859	Freshwater Lake Sediment	MVDKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLREWKEGRQVQLFLPLSKKKG
Ga0031653_102007132	3300003859	Freshwater Lake Sediment	MVDKRRRQRITISLDEEALKSVSAVASENDVSIARVIRYAVDNFLIEWKEGRQVQLFLPLSKKKGG*
Ga0031654_100548313	3300003861	Freshwater Lake Sediment	MADKKLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0068714_101134381	3300005254	Enrichment Culture	MVNDKQKQRITISLVKESFEYVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS*
Ga0074469_1065030715	3300005832	Sediment (Intertidal)	MINDKLKQRITISLVKESYENISSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKI*
Ga0079037_1003324542	3300006224	Freshwater Wetlands	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDKFLKELKEGSQVQLFLPLSRKKGG*
Ga0079037_1004351023	3300006224	Freshwater Wetlands	MADKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105093_103882402	3300009037	Freshwater Sediment	MVDKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105095_100489981	3300009053	Freshwater Sediment	MVNQSLRQRITISLNKEALKSVSSIASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG*
Ga0105095_104332462	3300009053	Freshwater Sediment	MADKKLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105099_100853642	3300009082	Freshwater Sediment	MVDKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKELKEGSQVQLFLPLSKKKGG*
Ga0102851_102736011	3300009091	Freshwater Wetlands	DKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0102851_126448061	3300009091	Freshwater Wetlands	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNEWKEGRQVQLFLPLSKKKGG*
Ga0115026_110702242	3300009111	Wetland	MADKRQRQRITISLDEEALKSVSTIASENDVSIARVVRHAVDNFLNEWKEGRQVQLFLPLSKKKGG*
Ga0115027_101363761	3300009131	Wetland	RPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDKFLKELKEGSQVQLFLPLSRKKGG*
Ga0115027_116004471	3300009131	Wetland	DSLVTGLMADKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0105101_103749921	3300009171	Freshwater Sediment	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKELKEGSQVQLFLPLSKKKGG*
Ga0116131_10432912	3300009760	Peatland	MLNGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYTVDNFLKEWKEGGQQQLFLPLGKKKGG*
Ga0136847_105495638	3300010391	Freshwater Sediment	MADKRLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKMKGG*
Ga0153915_101672993	3300012931	Freshwater Wetlands	MVAKKPRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSTKKGG*
Ga0153915_102122523	3300012931	Freshwater Wetlands	MVNDKLKQRITISLAKESFENVSSIALENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKKS*
Ga0153915_103723302	3300012931	Freshwater Wetlands	MVAKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0153915_107670543	3300012931	Freshwater Wetlands	MVEKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG*
Ga0153915_110347642	3300012931	Freshwater Wetlands	MADKRLRQRITISLDEEVLKSISFIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG*
Ga0153915_114603891	3300012931	Freshwater Wetlands	MVNDRQRERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKRG*
Ga0153915_119706842	3300012931	Freshwater Wetlands	MAGRRRRQRITISLDEEALKTVSSIASENDVSIARVVRYAMDNFLKEWKEGRQVQLFLPLSTKKGG*
Ga0153915_121327791	3300012931	Freshwater Wetlands	RQRITISLDEEVLKSISFIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0153916_100679052	3300012964	Freshwater Wetlands	MVNDKLKQRITISLVKETFENVSSIALENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKKS*
Ga0153916_101074503	3300012964	Freshwater Wetlands	MANQRLRQRITISLDKEALETISSISSENDVSIARVIRYAVDNLLKEWKEGRPDQLQLILPMGRKRRLQ*
Ga0153916_103490741	3300012964	Freshwater Wetlands	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG*
Ga0153916_115041182	3300012964	Freshwater Wetlands	MINGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGGQQQLFLPFGKKKGG*
Ga0153916_128236341	3300012964	Freshwater Wetlands	MINQRLRQRITISLDKEALKSVSSVASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKRG*
Ga0153916_133708091	3300012964	Freshwater Wetlands	MVDKRPRQRITISLDEEALKSVSAIASENDISIARVVRYAVDNFLKEWKEGSQVQLFLP
Ga0187849_11260482	3300017929	Peatland	MLNGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYTVDNFLKEWKEGGQQQLFLPLGKKKGG
Ga0187775_100165754	3300017939	Tropical Peatland	MVDKRIRQRITISLDEEALRSISSIASENDVSIARVVRYAVDNFLREWREGNQVQLFLPLSKKKGG
Ga0187775_100353112	3300017939	Tropical Peatland	MLEDRQRERITISLDKEALKSVSSIASENDVSIARVIRFAVDNFLKEWKEGRQEQLPLPLGKKKGG
Ga0187775_104754222	3300017939	Tropical Peatland	MVDKKARQRITISLDEEALKNVSSIASENDVSIARVIRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187786_100135642	3300017944	Tropical Peatland	MVKDRQRERITISLDKEALKSVSSIASENDVSIARVIRFAVDNFLKEWKEGRQEQLPLPLGKKKGG
Ga0187786_103218572	3300017944	Tropical Peatland	MVNKKARQRITISLDEGALKSISTIASENDVSIARVIRYAVDNFLREWKEGRQVQLFLPLSGKKGG
Ga0187778_102175523	3300017961	Tropical Peatland	MVAKRLRQRTTISLDEEALKSISSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187778_105882233	3300017961	Tropical Peatland	MTNGKLRQRITISLDKDALGRISSIASENDVSIARVVRHAVDNFLKEWKEGSQEQLFLPLGKKKGG
Ga0187776_100379645	3300017966	Tropical Peatland	MVDKRIRQRITISLDEEALRSVSSIASENDVSIARVVRYAVDNFLREWREGNQVQLFLPLSKKKGG
Ga0187776_103127661	3300017966	Tropical Peatland	MVDKRIRQRITISLDEEALKIISSIASENDVSIARVVRYAVDNFLREWREGNQVQLFLPLSRKKGG
Ga0187776_103145633	3300017966	Tropical Peatland	MVAKKIRQRTTISLDEEALKSISSIASENDVSIARVVRYAVDNFLREWKEGRQVQLFLPLSKKKGG
Ga0187776_103304462	3300017966	Tropical Peatland	MVKDRQRERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGRQEQLPLPLGKKKGG
Ga0187776_104859151	3300017966	Tropical Peatland	MVNDKSKQRITISLVKEVFESISSIASENDVSIAWVIRYAVDRFLKEWREGLQEQLFLPLGKNRGKK
Ga0187788_100747654	3300018032	Tropical Peatland	MVDKKQKQRIAISLDAEALKSVSFVASQNDVSTALVVRYAVDNFLKEWKEGRQVQLFLLLGKKKGG
Ga0184616_100652264	3300018055	Groundwater Sediment	MADKRLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0184615_102172564	3300018059	Groundwater Sediment	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187784_102660782	3300018062	Tropical Peatland	MVNGKLRQRITISLDKEALKRVSSIASENDVSIARVIRHTVDKFLKEWKEGSQGQLFLPLNKKKGG
Ga0187773_100303672	3300018064	Tropical Peatland	MAGKRLRQRITISLDEEALKTVSSIASENDVSIARVVRYAVDNFLNEWKEGRQVQLFLPLSKKKGG
Ga0187773_100757625	3300018064	Tropical Peatland	MVDKRVRQRITISLDEEALRSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187773_105284911	3300018064	Tropical Peatland	MVDKRARQRITISLDEEALKNVSSIASENDVSIARVIRYAVDNFLKEWKEGRQVQLFLPLSTKKGG
Ga0187773_106606621	3300018064	Tropical Peatland	RLRQRITISLDKMAMETVSSIASENDISIARVIRYAVDNLLKELKEGRQDQLQLNLPLARKES
Ga0184636_10212985	3300018068	Groundwater Sediment	RQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKMKGG
Ga0187769_100147195	3300018086	Tropical Peatland	MTNGKSRQRITISLDKGALKRLSSIALEYDVSIARVIRHAVDNFLKEWKEGSQEQLFLPLGNKKGDQ
Ga0187771_101811383	3300018088	Tropical Peatland	MVAKKLRQRTTVSLDEEALKSISSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0187771_106458882	3300018088	Tropical Peatland	MANGKLRQRITISLDAEALKRLSTIALEYDVSIARVIRHAVDNFLIEWKEGSQEQLFLPLGKKKGGQ
Ga0187774_106288503	3300018089	Tropical Peatland	MNNGKLRQRITISLNKDALKRISSVASENDVSIARVIRHAVDNFLKEWKEGRQEQLFLPLSKKKGGQ
Ga0187774_107865892	3300018089	Tropical Peatland	MVEDRQRERITISLDEEALKTVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSEKKGG
Ga0187770_101524471	3300018090	Tropical Peatland	MTNGKLRQRITISLKEALKRLSSIALENDVSIARVIRHAVDNLLKEWKEDRQEQLFLPLAKKKES
Ga0224495_103941411	3300022208	Sediment	MVNDKQKQRITISLVKESFENILSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKI
Ga0209521_104686242	3300025164	Soil	MNNHSTFKKKCQQKFTIFIHEGSLIINLMADKRQRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0209324_100900172	3300025174	Soil	MVDKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0256818_10165291	3300026353	Sediment	ISLDEEALKSVSAIASENDVSIARVIRYAVDSFLNEWKEGRQVQLFLPLSKKKGG
Ga0209286_10018252	3300027713	Freshwater Sediment	MVDKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0208665_100693423	3300027715	Deep Subsurface	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0209703_13243331	3300027723	Freshwater Sediment	MVNQSLRQRITISLNKEALKSVSSIASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG
Ga0209592_10250685	3300027731	Freshwater Sediment	LRQRITISLNKEALKSVSSIASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKG
Ga0214474_11031421	3300027740	Soil	MANQRLRQRITISLDKEALETLLSIASQNDVSIARVIRYAVDNLLKEWKEGRQHQLQLILPLGGKKEVAVT
Ga0214474_11107501	3300027740	Soil	MADKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKRKGG
Ga0256868_100115205	3300027811	Soil	MINQRLRQRITISLDKEALKSVSSVASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG
Ga0256868_101068763	3300027811	Soil	MVNDKLKQRISISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS
Ga0209293_100256025	3300027877	Wetland	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDKFLKELKEGSQVQLFLPLSRKKGG
Ga0209293_101060051	3300027877	Wetland	MADKRLRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0208980_100469753	3300027887	Wetland	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNKWKEDRQVQLFLPLSKKKGG
Ga0209253_100335572	3300027900	Freshwater Lake Sediment	MADKRLRQRITISLDEEALKSISSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKVKGG
Ga0209253_101133342	3300027900	Freshwater Lake Sediment	MVDKRRRQRITISLDEEALKSVSAVASENDVSIARVIRYAVDNFLIEWKEGRQVQLFLPLSKKKGG
Ga0209253_101775453	3300027900	Freshwater Lake Sediment	MVDKRLRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLREWKEGRQVQLFLPLSKKKGG
Ga0209253_104811283	3300027900	Freshwater Lake Sediment	MVNDKLKQRITISLVKETFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNK
Ga0209048_100570093	3300027902	Freshwater Lake Sediment	MADKKLRQRITISLDEEALKSVSSIASQNDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSKKKGG
Ga0299915_101276321	3300030613	Soil	MVNDKLKQRITISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS
Ga0299915_102079451	3300030613	Soil	MINQRLRQRITISLDKEALKSVSSVASDNDVSIARVIRYAVDNFLKEWKEGRQEQLFLPL
Ga0214473_100537504	3300031949	Soil	MVNDKLKQRITISLIKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNKGKNKKS
Ga0214473_112148821	3300031949	Soil	MVDKRQRQRITISLDEEALKSVSSIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLRKEKGG
Ga0315282_1002735710	3300032069	Sediment	MLNGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGGQQQLFLPFGKKKGG
Ga0315282_100286695	3300032069	Sediment	MVNDRQRGRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGRQEQLFLPLGKKKGG
Ga0316619_118399622	3300033414	Soil	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNEWKEDRQVQLFLPLSKKKGG
Ga0326726_101171774	3300033433	Peat Soil	MFIIFNHGDSLIIDFMVDKKQKQRIAISLDAETVKNVSSIASQNDVSIARVVRYAVDKFLKEWKEGRQVQLFLLLGKKKGG
Ga0326726_104952281	3300033433	Peat Soil	MINGKLRQRITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGGQQQLFLPFGKKKGG
Ga0316620_101579573	3300033480	Soil	MVNDRERERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGPQEQLLLPLGKKKGR
Ga0316620_106692862	3300033480	Soil	MVDKRLRQRITISLDEEALRSVSAIASENDVSIARVVRYAVDNFLNEWKEGRQVQLFLPLSKKKGG
Ga0316620_117787591	3300033480	Soil	MADKRQRQRITISLDEEALKSVSTIASENDVSIARVVRHAVDNFLNEWKEGRQVQLFLPLSKKKGG
Ga0316620_122315192	3300033480	Soil	MVDKRPRQRITISLDEEALRSVSAIASENDISIARVVRYAVDNFLKELKEGSQVQLFLPLSKKKGG
Ga0316620_122944841	3300033480	Soil	MIEKRLRQRITISLDKEALENIASIASENDISIGRVIRYAVGNFLKEWKEGRQEQLFLPLSKKKGGVAE
Ga0316624_118076661	3300033486	Soil	MADKRLRQRITISLDEEVLKSISFIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSGKKGG
Ga0316624_121364652	3300033486	Soil	MIEKRLRQRITISLDKEALESIASIASENDISIGRVIRYAVGNFLKEWKEGRQEQLFLPLSKKKAG
Ga0299912_103870352	3300033489	Soil	MVNDKLKQRISISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWREGRQEQLFLPLGKNNKGKNKKS
Ga0299912_108495733	3300033489	Soil	LMIDKRQRQRITISLDEEALKSVSSIASENDISIARVVRYAVDNFLKEWKEGRQVQLFLPLRRERGG
Ga0299912_109906341	3300033489	Soil	PIYMANDKLKQRITISLVKESFENVSSIASENDVSIAWVIRYAVDKFLKEWGEGRQEQLFLPLGKNNKGKNKKS
Ga0316628_1002130271	3300033513	Soil	MVAKKPRQRITISLDEEALKSVSSIASENDVSIARVVRYAVDNFLKEWKEGRQVQLFLPLSTK
Ga0316628_1010620203	3300033513	Soil	MIEKRLRQRITISLDKEALENIASIASENDISIGRVIRYAVGNFLKEWKEGRQEQLFLPLSKKKGG
Ga0316628_1014961943	3300033513	Soil	MVNDRQRERITISLDKEALKSVSSIASENDVSIARVIRYAVDNFLKEWKEGPQEQLLLPLGKKKGR
Ga0316628_1043721982	3300033513	Soil	MANQRLRQRITISLDKEALETISSISSENDVSIARVIRYAVDNLLKEWKEGRPDQLQLILPMGRKRRLQ
Ga0326723_0325912_128_328	3300034090	Peat Soil	MVDKKQRQRIAISLDAEALKSVSSIASHNDVSIARVVRYAVDNFLKGWKEGRQVQLFLPLSKKKGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092308

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences