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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F092345 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 74 residues |
| Representative Sequence | MSILQRSASPQAPAAASRPGSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALMDAVSVDEPDAIVV |
| Number of Associated Samples | 84 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 99.06 % |
| % of genes near scaffold ends (potentially truncated) | 96.26 % |
| % of genes from short scaffolds (< 2000 bps) | 95.33 % |
| Associated GOLD sequencing projects | 80 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.50 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (74.766 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.822 % of family members) |
| Environment Ontology (ENVO) | Unclassified (24.299 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (38.318 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.37% β-sheet: 14.29% Coil/Unstructured: 67.35% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF14714 | KH_dom-like | 2.80 |
| PF08220 | HTH_DeoR | 2.80 |
| PF00582 | Usp | 1.87 |
| PF03176 | MMPL | 1.87 |
| PF13476 | AAA_23 | 1.87 |
| PF11899 | DUF3419 | 0.93 |
| PF06441 | EHN | 0.93 |
| PF08447 | PAS_3 | 0.93 |
| PF07650 | KH_2 | 0.93 |
| PF00589 | Phage_integrase | 0.93 |
| PF12833 | HTH_18 | 0.93 |
| PF13011 | LZ_Tnp_IS481 | 0.93 |
| PF04203 | Sortase | 0.93 |
| PF04542 | Sigma70_r2 | 0.93 |
| PF13473 | Cupredoxin_1 | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG1033 | Predicted exporter protein, RND superfamily | General function prediction only [R] | 1.87 |
| COG2409 | Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily | General function prediction only [R] | 1.87 |
| COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | Transcription [K] | 0.93 |
| COG0596 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold | Coenzyme transport and metabolism [H] | 0.93 |
| COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Transcription [K] | 0.93 |
| COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family | Transcription [K] | 0.93 |
| COG3764 | Sortase (surface protein transpeptidase) | Cell wall/membrane/envelope biogenesis [M] | 0.93 |
| COG4941 | Predicted RNA polymerase sigma factor, contains C-terminal TPR domain | Transcription [K] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 74.77 % |
| All Organisms | root | All Organisms | 25.23 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 16.82% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 15.89% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 12.15% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 6.54% |
| Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 6.54% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 5.61% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 4.67% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 3.74% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.74% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 2.80% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.87% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.87% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 1.87% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 1.87% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.93% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.93% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.93% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.93% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.93% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2067725002 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000550 | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly | Environmental | Open in IMG/M |
| 3300000559 | Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly | Environmental | Open in IMG/M |
| 3300001431 | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly | Environmental | Open in IMG/M |
| 3300002459 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 | Host-Associated | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006194 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 | Host-Associated | Open in IMG/M |
| 3300006576 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009157 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 | Environmental | Open in IMG/M |
| 3300009800 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40 | Environmental | Open in IMG/M |
| 3300009840 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A | Environmental | Open in IMG/M |
| 3300010040 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55 | Environmental | Open in IMG/M |
| 3300010166 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27 | Environmental | Open in IMG/M |
| 3300012358 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012896 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2 | Environmental | Open in IMG/M |
| 3300012938 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015 | Environmental | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018052 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 | Environmental | Open in IMG/M |
| 3300018054 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 | Environmental | Open in IMG/M |
| 3300018056 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1 | Environmental | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018074 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2 | Environmental | Open in IMG/M |
| 3300018075 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1 | Environmental | Open in IMG/M |
| 3300018076 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex | Environmental | Open in IMG/M |
| 3300018078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex | Environmental | Open in IMG/M |
| 3300018081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300020003 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2 | Environmental | Open in IMG/M |
| 3300021078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo | Environmental | Open in IMG/M |
| 3300022195 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022694 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026535 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq) | Environmental | Open in IMG/M |
| 3300026770 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K1-12 (SPAdes) | Environmental | Open in IMG/M |
| 3300027056 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300027490 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes) | Environmental | Open in IMG/M |
| 3300027577 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300027722 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes) | Environmental | Open in IMG/M |
| 3300027743 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes) | Environmental | Open in IMG/M |
| 3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027952 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes) | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028592 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 | Environmental | Open in IMG/M |
| 3300028717 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158 | Environmental | Open in IMG/M |
| 3300028771 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369 | Environmental | Open in IMG/M |
| 3300028791 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144 | Environmental | Open in IMG/M |
| 3300028811 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149 | Environmental | Open in IMG/M |
| 3300028819 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 | Environmental | Open in IMG/M |
| 3300028875 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143 | Environmental | Open in IMG/M |
| 3300028878 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 | Environmental | Open in IMG/M |
| 3300030006 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 | Environmental | Open in IMG/M |
| 3300030620 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 | Environmental | Open in IMG/M |
| 3300031854 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 | Environmental | Open in IMG/M |
| 3300031908 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 | Environmental | Open in IMG/M |
| 3300032013 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300032122 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4 | Environmental | Open in IMG/M |
| 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Host-Associated | Open in IMG/M |
| 3300033551 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| GPICC_03936240 | 2067725002 | Soil | MSILQRSASAQAPAGSRPPSERLRVITAGRVGNMEARLGTSGFDVVTAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRDLAPDAVLI |
| F24TB_101406332 | 3300000550 | Soil | MSILKRSASPQTPAAEWGPHSDRLRVITAGRVGNMEARLGASGFDVVAAAETEDGLIDAVSADGPDAIVVEADLCDSLERVR |
| F14TC_1015878891 | 3300000559 | Soil | MSILKRSASPXXPAAEWGPHSDRLRVITAGRVGNMDASLGASGFDVVAVAQTQDALIDAVSTDEPDAIVVEA |
| F14TB_1011980441 | 3300001431 | Soil | MSILKRSASPQTPAAEWGPHSDRLRVITAGRVGNMEARLGASGFDVVAAAETEDGLIDAV |
| JGI24751J29686_100179682 | 3300002459 | Corn, Switchgrass And Miscanthus Rhizosphere | MSILERPASPHAPAAEEEPPSDRLRVIMAGRVGNMDASLGASGFDVVAVAPTQDALID |
| Ga0062589_1006957032 | 3300004156 | Soil | MSIRERPASPHARAAEGEPPSDLRVIMAGRVGNIDASLGASGFDVVAVAQTQDA |
| Ga0062589_1009061892 | 3300004156 | Soil | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEAD |
| Ga0063356_1017906321 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MSILERSNLPPPPAGSKPRSHRLRVITAGRVGNMDARLGTSGFDVVAVAETEDALIDAVS |
| Ga0063356_1058167161 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MSILERPASPQVSAAESVEDSARLSVIMAGRVGNMDALLGANGFDVAAVAQTEDALLDAV |
| Ga0062595_1007612612 | 3300004479 | Soil | MSILQRSASAQAPAGSRPPSERLRVITAGRVGNMEARLGTSGFDVVTAAETEDALIDAVSVDEPDAIVVEADLCDS |
| Ga0062595_1025934662 | 3300004479 | Soil | MSILERSNLPPPPAGSKPRSDRLRVITAGRVGNMDARLGTSGFDVVAVAETEDALIDAVSAGEADAI |
| Ga0070692_101736514 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | MSIVERSASPQAPAAGSVEPSDRLSVITAGRVGNMDALLGANGFNVVAVAQTEGALIDAVSADEPDAIVVEADMCTSLEHVREL |
| Ga0070705_1006435082 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MSIVERSASPQAPAAGSVEPSDRLSVITAGRVGNMDALLGANGFNVVAVAQTEGALIDAVSADEPDAIVVEADLCDSLEHVRDLAP |
| Ga0070698_1007061573 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSILQRSTSAPAPAGSRAPSERLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIV |
| Ga0068852_1024065571 | 3300005616 | Corn Rhizosphere | MSSLEGSSPPPAEAAGSGTRSDRLRVITAGRVGNMEARLGTSGFDVVAAAETENALIDAVSVDEPDAIVVEAD |
| Ga0068859_1005375611 | 3300005617 | Switchgrass Rhizosphere | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEADL |
| Ga0068863_1020408002 | 3300005841 | Switchgrass Rhizosphere | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAV |
| Ga0081455_102587331 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MSILKRSASPQSADERPSSGRLSVITAGSVGNVEARLGASGFEIVAVAETEDALVDAVSAEEPDAIVV |
| Ga0075417_105217171 | 3300006049 | Populus Rhizosphere | MSIVERSASPQAPAAGSAEPSNRLSVITAGRVGNMDALLGANGFDVVAVAQTEDALIDAVSADEPDAIVVEADMCTSLEHVR |
| Ga0075417_107087361 | 3300006049 | Populus Rhizosphere | MSTLERSASTEAPAAGSNPRGDRLRVITAGHVGDMEAPLGASGFDVVAVAETEDALIGALSSDGPDAIVVEADLCSSLEQVRD |
| Ga0075427_100199081 | 3300006194 | Populus Rhizosphere | MSSLEGSSPPPAEAAGSGTRSARLRVITAGRVGNMEARLGTSGFDVVAAAETENALIDAVSVDEPDAIVVEADLCDSLELVRDLAPDAVVIVVGDHTPP |
| Ga0074047_120549142 | 3300006576 | Soil | MSILERPTSPEAQAAEKRPPGDRLRVITAGDVGNIDARLGARGFDVVAVAETEDALVHA |
| Ga0075428_1005454342 | 3300006844 | Populus Rhizosphere | MDDDFHREPGAVSILERSTSPPEAPATEWGPHSDRLRVITAGSVGNMEARLGTNGFDVVVAAETEDALIDAVSVDEPDAIVVEAE |
| Ga0075428_1017305762 | 3300006844 | Populus Rhizosphere | MSILKRSKSPQQAEERPSSGRLSVITAGSVGNVEARLGASGFDIVAVAETEDALVDAVSAGEPDAIVVEAGLCSSLEHVRDLAPDAVLIAI |
| Ga0075431_1007190843 | 3300006847 | Populus Rhizosphere | MSILERSTSPPEAAPAAEERLHSDRLRVITAGSVGNMDARLATSGFDVVAAAETEDALIDAVSVDEPDAIVVEAELCDSLEHVRDLAPDAVLIAVGD |
| Ga0075429_1008872161 | 3300006880 | Populus Rhizosphere | MSIVERSASPHAPAAGSAEPSDRLSVITAGRVGNMDALLGANGFDVVAVAQTEDALIDAVSA |
| Ga0075429_1010757192 | 3300006880 | Populus Rhizosphere | MSILERSTSPPEAAPAAEERLHSDRLRVITAGSVGNMDARLATSGFDVVAAAETEDALIDAVSVDEPDAIVVEAE |
| Ga0075419_106710692 | 3300006969 | Populus Rhizosphere | MSNLEGSFSPSAEDVGSGTRSDRLRVITAGRVGNMDARLGTSGFDVVAVAETENALIDAVSIDEPDAIVVEADLCASLELVRDLAP |
| Ga0075419_111046442 | 3300006969 | Populus Rhizosphere | MSILQRSASAQAPAGSRPPSERLRVITAGRVGNMEARLGTSGFDVVTAAETEDALI |
| Ga0114129_103331984 | 3300009147 | Populus Rhizosphere | MDDDFHREPGAVSILERSTSPPEAPATEWGPHSDRLRVITAGSVGNMEARLGTNGFDVVVAAETEDALIDAVSVDEPDAIV |
| Ga0114129_109832661 | 3300009147 | Populus Rhizosphere | MSMLDRSASPEASAAESVEQSDRLSVITAGRIGNMDALLGANGFDVASVAQTEEALMDAVSTDEPDAIVV |
| Ga0114129_121996841 | 3300009147 | Populus Rhizosphere | MAMSILERPASPHAPAAEEEPPSDRLRVIMAGRVGNMDASLGASGFDVVAVAPTQDALIDAVSVDEPDAIVVEADMCTSLEHVRDLAPDAVLIVVGD |
| Ga0111538_130265801 | 3300009156 | Populus Rhizosphere | MSILERPTSPQTQAVEKRLPGDRLRVITAGDVGNIDARLGARGFDVVAVAETEDALVHAVSEDEPDAIVVEADLCDSLEHVRDLAPAAVLIAVGDHTP |
| Ga0105092_100650561 | 3300009157 | Freshwater Sediment | MVLKGVPNRKWSTSVHREPAAMSILERSTSPPQAPAAEWGHSDRLRVITAGSVGSMEARLGTNGFDVVAAAETEDALIDA |
| Ga0105092_100823961 | 3300009157 | Freshwater Sediment | MSILERSTSPPQPPAAEWGAHGDRLRVITAGRVGNIGARLGASGFDVVVAAETEDALIDAVSADEADAIVVEADLCDSLEHVRDMAPD |
| Ga0105069_10131942 | 3300009800 | Groundwater Sand | MVLKGFRLRKSSTTVHREPTAMSILKRYASPPAPAAEWRPHSDRLRVITAGRVGNMDARLGTSGFVVVASAETEDALMDAVSGGEPDAIVVEADLCDSLEH |
| Ga0126313_113293511 | 3300009840 | Serpentine Soil | MSILERSASPQVSAAESVEHSDRLSVITAGHVGNMETRLGASGFDVVAVAETENA |
| Ga0126308_111696232 | 3300010040 | Serpentine Soil | MSIVERSTSLPAPPAGPKPRGERLRVITAGRVGNMDARLGTSGFDVVAAPETEDALIDAVSADEVDAIVVE |
| Ga0126306_109699641 | 3300010166 | Serpentine Soil | MSILERSASPQVSAAESVEYSDRLSVITAGRVGNMDALLGANGLVVVAVAQTEDALIDAVVGG* |
| Ga0137368_105152641 | 3300012358 | Vadose Zone Soil | MSMLDRSASPQAPAAGSRPHSDRLRVITAGHVGNMDARLGTSGFDVVAAAESEDALIDAVSGDEPDAIVVEADLCDSLELVRDL |
| Ga0157303_100596741 | 3300012896 | Soil | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEE |
| Ga0162651_1000432711 | 3300012938 | Soil | MSIIERSASPQAPAAGSVEPSDRLSVITAGRVGNMDASLEANGFDVVAVAQTQDALIDAVSADEPD |
| Ga0163163_112768811 | 3300014325 | Switchgrass Rhizosphere | MSILERPASPRVSAAESVEDTARLSVIMAGRVGNMDALLGANGFDVAAVAQTEDALIDAVSAEEPDAIVVGADLCDSLE |
| Ga0132257_1029208141 | 3300015373 | Arabidopsis Rhizosphere | MSILERSASRQAPAAEWRPHRDELRVITAGRVGNMEAQLGTSGFDVVAVAETEDALIDAVSADEPDAVVVEADLCASLERVRDLAPN |
| Ga0163161_111104032 | 3300017792 | Switchgrass Rhizosphere | MSIVERSASPQAPAAGSVEPSDRLSVITAGRVGNMDALLGANGFNVVAVAQTEGALIDAVSADEPDAIVVEADMCTSLEHVRELAP |
| Ga0184638_12682211 | 3300018052 | Groundwater Sediment | MSILQRSASPQAPADSRPPSERLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIV |
| Ga0184621_101279343 | 3300018054 | Groundwater Sediment | MSILERPTSPEAQAAEKRPPGDRLRVITAGDVGNIDARLGARGFDVVAVAETEDALVHAVSADEPDAIVV |
| Ga0184623_100343994 | 3300018056 | Groundwater Sediment | MSILKRYASPQAPAAEWRPHSDRLRVITAGRVGTMEARLGASGFEVVAVAETEDALIDAVSADEPDAIVVE |
| Ga0184624_102710181 | 3300018073 | Groundwater Sediment | MSMLKRSALSRASATESLEHRDQLSVITAGRVGDMDALLGANGFDIVAVAQSEDALIDAVSADETDAIIVEADLCDSLEHVRDLAPDAV |
| Ga0184640_103962561 | 3300018074 | Groundwater Sediment | MSILERSASPQASAAESVEHSDRLSVITAGRVGNMDALLGANGFDVVAVAQTEDALIDAVAADEPDAIVVEADMCTSLEHVRDLAPD |
| Ga0184632_101585271 | 3300018075 | Groundwater Sediment | MSILERSTSPPQAPAAEWGPHSDRLRVITAGSVGNMEARLGTNGFDVVVAAETEDALIDAVSVDEPDAIVVEAELC |
| Ga0184609_100809962 | 3300018076 | Groundwater Sediment | MSILERSASQQPLPASSNLPSDRLSVITAGRVGNMEARLGASGFEVVAVAETEDALIDAV |
| Ga0184609_101736753 | 3300018076 | Groundwater Sediment | MSILERSASPPLPARSNLHSDRLRVITAGRVGNMEARLGASGFEVVAVAETEDALIDAVSADEPDA |
| Ga0184612_100587354 | 3300018078 | Groundwater Sediment | MSILQRSASAQAPADSRPPSERLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRDLAPDA |
| Ga0184612_103078302 | 3300018078 | Groundwater Sediment | MSILNGSALPQAPAAGSGPHNDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRDLAP |
| Ga0184625_100565693 | 3300018081 | Groundwater Sediment | MSILKRYASPQAPAAEWRPHSDRLRVIPAGRVSNMEARLGASGFDVVAVAETEHGLIDAV |
| Ga0184625_101877821 | 3300018081 | Groundwater Sediment | MSILNGSALPQAPAAGSGPHNDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRD |
| Ga0184625_105994461 | 3300018081 | Groundwater Sediment | MSNLEGPSSPSAEGVGSGTRSDRLRVITAGRVGNMEARLGTSGFDIVAAAETENALIDAVSVDEPDAIVVEADLCASLELVRDLAPDAVVIVVGDHTPPGA |
| Ga0190270_121575781 | 3300018469 | Soil | MSIHEGSASPKPPVAGSGPRSDRLRVITAGRVGNMEARLGTSGFDVVAAADTEDALIDAVCVDEPDAIVVEADLC |
| Ga0193739_10392741 | 3300020003 | Soil | MSMSKRSASQRAPAAEWRPHSDRLSVITAGRVGNMEARLGASGFDVVAVAETEDA |
| Ga0210381_100912161 | 3300021078 | Groundwater Sediment | MSILQRSASPQAPAAASRPGSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALMDAVSVDEPDAIVV |
| Ga0222625_16292471 | 3300022195 | Groundwater Sediment | MSILERPTSPEAQAAEKRPPGDRLRVITAGDVGNIDARLGARGFDVVAVAETEDALVHAVSADEPDA |
| Ga0222623_103512701 | 3300022694 | Groundwater Sediment | MSILERSTWPPPPPASSKPRSDRLRVITAGRVGNMEARLGTSGFDIVAVAETE |
| Ga0222622_106755751 | 3300022756 | Groundwater Sediment | MSILQRSASPQAPAAASRPGSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDAL |
| Ga0207688_108884092 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MSSLEGSSPPPAEAAGSGTRSDRLRVITAGRVGNMEARLGTSGFDVVAAAETENALIDAVSVDEPDAIVVEADLCDSLELVRDLAPDAVVIVVGDHTPPGAL |
| Ga0207649_112414002 | 3300025920 | Corn Rhizosphere | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEA |
| Ga0207689_113575861 | 3300025942 | Miscanthus Rhizosphere | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEADLCDSLERVRDLA |
| Ga0207708_113278992 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | MSIQHSASRQAPAAEWRPHRDELRVITAGRVGNMEAQLGTSGFDVVAVA |
| Ga0207676_106892431 | 3300026095 | Switchgrass Rhizosphere | MSILERSASRQAPAAEWRPHRDELRVITAGRVGNMEAQLGTSGFDVVAVAETEDALIDAVSADEPDAVIVEA |
| Ga0207676_121243621 | 3300026095 | Switchgrass Rhizosphere | MSILERPASPHAPAAEEEPPSDRLRVIMAGRVGNMDASLGASGFDVVAVAPTQDALIDA |
| Ga0256867_101416262 | 3300026535 | Soil | MSILERFTSAPQAPAAEWGPHTDRLRVITAGSVGSMEARLGTNGFDVVAAAETED |
| Ga0207537_1036661 | 3300026770 | Soil | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAEGEAQPVAA |
| Ga0209879_10386611 | 3300027056 | Groundwater Sand | MSILQRSVSAQAPAGSRPPSERLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRDMAPDAVLIVVGDH |
| Ga0209899_10619201 | 3300027490 | Groundwater Sand | VSILEGSASQRARAAASNPRSDRLRVITAGRVGNMDARLGTSGFVVVASAETEDALMDAVSGG |
| Ga0209874_10356002 | 3300027577 | Groundwater Sand | MSILKRYASPPAPAAEWRPHSDRLRVITAGRVGNMEARLGASGFEVVAVAETEHALIDAVSAD |
| Ga0209874_10662802 | 3300027577 | Groundwater Sand | MSILERSVSAQAPAAGSPPPSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDA |
| Ga0209874_11350141 | 3300027577 | Groundwater Sand | MSILERSTSPPQPPAAEWGAHSDRLRVITAGRVGNMDARLATSGFDVVAVAETEDALIDAVSADEPDAIVVEAELCDSLEHVRDLAPD |
| Ga0209819_103344211 | 3300027722 | Freshwater Sediment | MSILERFTSPPQAPAAEWGPDSDRLRVITAGSVGNMDARLGTNGFDVVAAAETED |
| Ga0209593_102228151 | 3300027743 | Freshwater Sediment | MSILERSASQQAPAAGSVEPSDRLSVITGGRVGNMDALLGANGFDVVAVAQTEDALIDAISADEPDAIVVEADMCTSLEHVR |
| Ga0209814_101466902 | 3300027873 | Populus Rhizosphere | MSTLERSASTEAPAAGSNPRCDRLRVITAGHVGDMEAPLGASGFDVVAVAETEDALIGALSA |
| Ga0209481_105720341 | 3300027880 | Populus Rhizosphere | MSILQRSASAQAPAGSRPPSERLRVITAGRVGNMEARLGTSGFDVVTAAETEDALIDAVSVDEP |
| Ga0209382_109326942 | 3300027909 | Populus Rhizosphere | MSILERSTSPPEAAPAAEERLHSDRLRVITAGSVGNMDARLATSGFDVVAAAETEDALIDAVSVDEPDAIVVE |
| Ga0209382_118520151 | 3300027909 | Populus Rhizosphere | MSTLERSASTEAPAAGLNPRGDRLRVITAGHVGDMEAQLGASGFDVVAVAETEDALIGALSSDGPDAIVVEADLCSSL |
| Ga0209889_10666232 | 3300027952 | Groundwater Sand | MAILKRSAPPQAPAAEWRPHSDRLNVITAGRVGNMDARLGTSGFDVVAVAETEDALIDAVSADEPDAIVVEADLCDSLE |
| Ga0268265_116271151 | 3300028380 | Switchgrass Rhizosphere | MSSLEGSSPPPAEAAGSGTRSDRLRVITAGRVGNMEARLGTSGFDVVAAAETENALIDAVSVDEPDAIVVEADLCDSLELV |
| Ga0268265_123037082 | 3300028380 | Switchgrass Rhizosphere | MSIVERSASPQAPAAGSVEPSDRLSVITAGRVGNMDALLGANGFNVVAVAQTEGALIDAV |
| Ga0247822_114232651 | 3300028592 | Soil | MSILERSASRQAPAAEWRPHRDELRVITAGRVGNMEAQLGTSGFDVVAVAETEDALIDAVSADEPDAVVVEADLCASLERVRDLAPDAVLIVVGDH |
| Ga0307298_101945111 | 3300028717 | Soil | MSILERSASSQGSAAEWVEDSARLSVITAGSVGNMDALLGANGFDVVAVAQTEDALIAAVAADEPDAIV |
| Ga0307320_100734602 | 3300028771 | Soil | MSILQRSASPQAPADSRPPSERLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDA |
| Ga0307320_103055272 | 3300028771 | Soil | MSILERSNLPPPPAGSKPRNDRLRVITAGRVGNMDARLGTSGFDVVAVAETEDALIDAVS |
| Ga0307320_103576161 | 3300028771 | Soil | MSNLEGSFSPSAEDVGSGTRSDRLRVITAGHVGNMEARLGTSGFDVVAAAETENALIDAVSVDEPDAIVVEADLCTSLELVRDLAPEAVVIVV |
| Ga0307290_100826471 | 3300028791 | Soil | MSILQRSASPQAPAAASRPGSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAV |
| Ga0307292_100877412 | 3300028811 | Soil | MSHLEGPSSPSAEGVGSGTRSDRLRVITAGRVGNMEARLGTSGFDIVAAAETENALIDAVSVDEPDAIVVEADLCASLELVRDLAPDAVVIVVGDH |
| Ga0307296_105584111 | 3300028819 | Soil | MSILKRSASPQAPVAEWRPHSDRLSVITAGLVGNMEARLGASGFDVVAVAETEDALIDAVSADEPDAIVVEADLCASLEHVRDLAPDA |
| Ga0307289_100206806 | 3300028875 | Soil | MSILEPSTSARAPAGSRAPSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRELAP |
| Ga0307278_101397162 | 3300028878 | Soil | MSIIERSASPQAPAGSRPPSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRDLA |
| Ga0307278_102453571 | 3300028878 | Soil | MSILQRSTSAQASADDSRPGSDRLRVITAGRVGNMEARLGTSGFDVVAAAETEDALIDAVSVDEPDAIVVEADLCDSLEHVRDLAPDAVLIVV |
| Ga0307278_104926631 | 3300028878 | Soil | MSILQRSASAQAPASSRPPSDRLRVITAGRVGNMEARLGTSGFDVVAAAQTE |
| Ga0299907_103660022 | 3300030006 | Soil | MSILERFTSPPQAPAAEWGPHTDRLRVITAGSVGSMEARLGTNGFDVVAAA |
| Ga0302046_102751501 | 3300030620 | Soil | MSILERFTSPPQAPAAEWGPHTDRLRVITAGSVGSMEARLGTNGFDVVAAAETEDAL |
| Ga0310904_101579683 | 3300031854 | Soil | MSILERSASRQAPAAEWRPHRDELRVITAGRVGNMEAQLGTSGFDVVAVAETEDAL |
| Ga0310900_103357031 | 3300031908 | Soil | MSIIERSASPQAPAPGSKPRGGRLRVITAGRVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEADLCDSLERVRD |
| Ga0310906_110972452 | 3300032013 | Soil | MSIIERSASPQAPAPGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEKALIDAVSADEADAIVVEADLCDSLE |
| Ga0310890_102545372 | 3300032075 | Soil | MSILERSASRQAPAAEWRPHRDELRVITAGRVGNMEAQLGTSGFDVVAVAETEDALNDA |
| Ga0310895_105780711 | 3300032122 | Soil | MSIIERSASPQAPAAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEEALIDAVSADEADAIVVEADLCDSLERVRDLA |
| Ga0307415_1022072301 | 3300032126 | Rhizosphere | MSIVERSTSLPAPPAGPKPRGERLRVITAGRVGNMDARLGTSGFDVVAVAKTEDALIDALSADEVDAIVV |
| Ga0247830_105503471 | 3300033551 | Soil | MSILERPTSPEARAAKKRPPGDRLRVITAGDVGNIDARLGARGFDVVAVAETEDALVHAVSADEPDAIVVEADLCDSLERVRDLAPDAVLIAIGDEGVQEPCHHSAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |