NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F092401

Metagenome / Metatranscriptome Family F092401

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092401
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 104 residues
Representative Sequence MPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Number of Associated Samples 80
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 70.09 %
% of genes near scaffold ends (potentially truncated) 39.25 %
% of genes from short scaffolds (< 2000 bps) 69.16 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment
(32.710 % of family members)
Environment Ontology (ENVO) Unclassified
(32.710 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.664 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.08%    β-sheet: 26.50%    Coil/Unstructured: 50.43%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00011HSP20 8.41
PF13545HTH_Crp_2 5.61
PF00990GGDEF 5.61
PF13426PAS_9 4.67
PF01541GIY-YIG 1.87
PF01145Band_7 1.87
PF00118Cpn60_TCP1 1.87
PF01740STAS 1.87
PF02310B12-binding 1.87
PF00487FA_desaturase 1.87
PF00582Usp 0.93
PF13276HTH_21 0.93
PF09722Xre_MbcA_ParS_C 0.93
PF00144Beta-lactamase 0.93
PF01381HTH_3 0.93
PF13520AA_permease_2 0.93
PF04679DNA_ligase_A_C 0.93
PF04366Ysc84 0.93
PF13188PAS_8 0.93
PF04734Ceramidase_alk 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 8.41
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 1.87
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 1.87
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 1.87
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.93
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.93
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.93
COG2367Beta-lactamase class ADefense mechanisms [V] 0.93
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 0.93


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002909|JGI25388J43891_1022046All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1108Open in IMG/M
3300003352|JGI26345J50200_1017214All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium745Open in IMG/M
3300004091|Ga0062387_100042678All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2111Open in IMG/M
3300005166|Ga0066674_10122790All Organisms → cellular organisms → Bacteria1216Open in IMG/M
3300005171|Ga0066677_10270890All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium967Open in IMG/M
3300005176|Ga0066679_10946800All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
3300005531|Ga0070738_10001165All Organisms → cellular organisms → Bacteria58193Open in IMG/M
3300005552|Ga0066701_10354098All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium909Open in IMG/M
3300005561|Ga0066699_10181402All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1456Open in IMG/M
3300005566|Ga0066693_10021128All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1972Open in IMG/M
3300005712|Ga0070764_10500846All Organisms → cellular organisms → Bacteria → Acidobacteria730Open in IMG/M
3300005921|Ga0070766_10171753All Organisms → cellular organisms → Bacteria → Acidobacteria1340Open in IMG/M
3300006176|Ga0070765_101035022All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium776Open in IMG/M
3300006755|Ga0079222_10002219All Organisms → cellular organisms → Bacteria5846Open in IMG/M
3300006791|Ga0066653_10145917All Organisms → cellular organisms → Bacteria1145Open in IMG/M
3300006800|Ga0066660_10140832All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1774Open in IMG/M
3300006804|Ga0079221_10116512All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1342Open in IMG/M
3300010303|Ga0134082_10002984All Organisms → cellular organisms → Bacteria → Acidobacteria6004Open in IMG/M
3300010320|Ga0134109_10094161All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1037Open in IMG/M
3300010321|Ga0134067_10065092All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1198Open in IMG/M
3300010337|Ga0134062_10570238All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium579Open in IMG/M
3300010343|Ga0074044_10902450All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium578Open in IMG/M
3300011120|Ga0150983_14661949All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium915Open in IMG/M
3300012199|Ga0137383_10153820All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1684Open in IMG/M
3300012200|Ga0137382_10569981All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium807Open in IMG/M
3300012203|Ga0137399_10039414All Organisms → cellular organisms → Bacteria → Acidobacteria3340Open in IMG/M
3300012211|Ga0137377_11606843All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium574Open in IMG/M
3300012398|Ga0134051_1008161All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
3300015374|Ga0132255_101690600All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium960Open in IMG/M
3300017822|Ga0187802_10007246All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3456Open in IMG/M
3300017822|Ga0187802_10011162All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2906Open in IMG/M
3300017822|Ga0187802_10071942All Organisms → cellular organisms → Bacteria1283Open in IMG/M
3300017822|Ga0187802_10263892All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium668Open in IMG/M
3300017924|Ga0187820_1026323All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1488Open in IMG/M
3300017924|Ga0187820_1035135All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1314Open in IMG/M
3300017927|Ga0187824_10364240All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300017928|Ga0187806_1067190All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1110Open in IMG/M
3300017928|Ga0187806_1380420All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium507Open in IMG/M
3300017930|Ga0187825_10336890All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium568Open in IMG/M
3300017930|Ga0187825_10367080All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
3300017932|Ga0187814_10160753All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium838Open in IMG/M
3300017932|Ga0187814_10417992All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300017933|Ga0187801_10006201All Organisms → cellular organisms → Bacteria3814Open in IMG/M
3300017933|Ga0187801_10057828All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1419Open in IMG/M
3300017933|Ga0187801_10272961All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium683Open in IMG/M
3300017933|Ga0187801_10361357All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300017934|Ga0187803_10000301All Organisms → cellular organisms → Bacteria → Acidobacteria20415Open in IMG/M
3300017942|Ga0187808_10018773All Organisms → cellular organisms → Bacteria → Acidobacteria2781Open in IMG/M
3300017942|Ga0187808_10379160All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium645Open in IMG/M
3300017943|Ga0187819_10018646All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4014Open in IMG/M
3300017943|Ga0187819_10088937All Organisms → cellular organisms → Bacteria → Acidobacteria1844Open in IMG/M
3300017955|Ga0187817_10030160All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3279Open in IMG/M
3300017955|Ga0187817_10184509All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1329Open in IMG/M
3300017955|Ga0187817_10687916All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium652Open in IMG/M
3300017995|Ga0187816_10094264All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1282Open in IMG/M
3300017995|Ga0187816_10187657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium898Open in IMG/M
3300017995|Ga0187816_10508857All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium543Open in IMG/M
3300018006|Ga0187804_10296311All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium704Open in IMG/M
3300018006|Ga0187804_10344249All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium654Open in IMG/M
3300018006|Ga0187804_10490442All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium551Open in IMG/M
3300018006|Ga0187804_10520383All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
3300018007|Ga0187805_10229417All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium850Open in IMG/M
3300018012|Ga0187810_10011785All Organisms → cellular organisms → Bacteria → Acidobacteria3067Open in IMG/M
3300018012|Ga0187810_10103720All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1119Open in IMG/M
3300018431|Ga0066655_10002672All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6816Open in IMG/M
3300018468|Ga0066662_10379833All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1231Open in IMG/M
3300020583|Ga0210401_10274402All Organisms → cellular organisms → Bacteria → Acidobacteria1546Open in IMG/M
3300020583|Ga0210401_10807334All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium798Open in IMG/M
3300021420|Ga0210394_10000399All Organisms → cellular organisms → Bacteria94955Open in IMG/M
3300021474|Ga0210390_10001669All Organisms → cellular organisms → Bacteria20795Open in IMG/M
3300024232|Ga0247664_1001683All Organisms → cellular organisms → Bacteria → Acidobacteria4989Open in IMG/M
3300025905|Ga0207685_10257523All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium846Open in IMG/M
3300026308|Ga0209265_1096586All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium789Open in IMG/M
3300026314|Ga0209268_1001111All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium13319Open in IMG/M
3300026314|Ga0209268_1057424All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1216Open in IMG/M
3300026315|Ga0209686_1017423All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2894Open in IMG/M
3300026316|Ga0209155_1015245All Organisms → cellular organisms → Bacteria3293Open in IMG/M
3300026327|Ga0209266_1045041All Organisms → cellular organisms → Bacteria2215Open in IMG/M
3300026333|Ga0209158_1002038All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium12816Open in IMG/M
3300026523|Ga0209808_1065543All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1603Open in IMG/M
3300026532|Ga0209160_1147038All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1091Open in IMG/M
3300026547|Ga0209156_10034392All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2838Open in IMG/M
3300026552|Ga0209577_10261606All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1302Open in IMG/M
3300027548|Ga0209523_1077269All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium687Open in IMG/M
3300027725|Ga0209178_1003333All Organisms → cellular organisms → Bacteria → Acidobacteria5053Open in IMG/M
3300027725|Ga0209178_1127018All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium867Open in IMG/M
3300027729|Ga0209248_10165469All Organisms → cellular organisms → Bacteria → Acidobacteria658Open in IMG/M
3300027829|Ga0209773_10017304All Organisms → cellular organisms → Bacteria → Acidobacteria2809Open in IMG/M
3300027965|Ga0209062_1001036All Organisms → cellular organisms → Bacteria58207Open in IMG/M
3300028072|Ga0247675_1075999All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
3300028293|Ga0247662_1078823All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium589Open in IMG/M
3300028906|Ga0308309_10887111All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium774Open in IMG/M
3300031754|Ga0307475_10033749All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3740Open in IMG/M
3300032180|Ga0307471_102714285All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium628Open in IMG/M
3300032770|Ga0335085_10063728All Organisms → cellular organisms → Bacteria4912Open in IMG/M
3300032770|Ga0335085_10398820All Organisms → cellular organisms → Bacteria → Acidobacteria1597Open in IMG/M
3300032782|Ga0335082_10028704All Organisms → cellular organisms → Bacteria → Acidobacteria5918Open in IMG/M
3300032782|Ga0335082_10045994All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4550Open in IMG/M
3300032782|Ga0335082_10226541All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1760Open in IMG/M
3300032829|Ga0335070_10157104All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2305Open in IMG/M
3300032892|Ga0335081_11789505All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium665Open in IMG/M
3300032893|Ga0335069_10636049All Organisms → cellular organisms → Bacteria → Acidobacteria1220Open in IMG/M
3300032897|Ga0335071_10034526All Organisms → cellular organisms → Bacteria5019Open in IMG/M
3300032955|Ga0335076_10342268All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1382Open in IMG/M
3300033004|Ga0335084_10500095All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1249Open in IMG/M
3300033405|Ga0326727_10116906All Organisms → cellular organisms → Bacteria → Acidobacteria3375Open in IMG/M
3300033405|Ga0326727_10415759All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1223Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment32.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil14.95%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil10.28%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.54%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.67%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.74%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.74%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.74%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.87%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.87%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.87%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.87%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300003352Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005531Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012398Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300024232Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026308Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027548Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027965Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300028072Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16EnvironmentalOpen in IMG/M
3300028293Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25388J43891_102204643300002909Grasslands SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRXDHYTCLYVGQTNXLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
JGI26345J50200_101721413300003352Bog Forest SoilMPFSGNSHSFDSSTLKALNDSGSVYGLFKVDLPFRPDHYTCLFVGQTSDLKTRLLDQYNHPSITGVTHFFAEDSANEQQRNLRENELIAEFNPPGNKKSELTYKPFVEAPPKSTPHD*
Ga0062387_10004267823300004091Bog Forest SoilMPFSGNSHSFDSSTLKALNDSGSVYGLFKVDLPFRPDHYTCLFVGQTSDLKTRLLDQYNHPSITGVTHFFAEDSANEQQRNLRENELIAEFNPPGNKKSELTYKPFVEAPPKSTPHN*
Ga0066674_1012279013300005166SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0066677_1027089023300005171SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0066679_1094680013300005176SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNNLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0070738_10001165503300005531Surface SoilMPFSGNCHSFDSSTLDSSTLKALNDVGMVYGLFKEDLPFRPDHYTCLFVGQTNNLRARLLEHYSNRSIAGVTHFFAETSATEQQQKLREKELIAEFNPSGNKN*
Ga0066701_1035409813300005552SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQ
Ga0066699_1018140213300005561SoilMPFSGDCHSFDSSTLKVLNNIGAVYRLFKTDLPFRPDHYTCLYVGQANDLRTRMLEHYKNPPIIGVTRFFAEAIATEEQRLQREKERKN*
Ga0066693_1002112813300005566SoilMRSYAASVARQDLCVRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0070764_1050084613300005712SoilLKALNDDGSVYGLFKADLPFRPDHYTCLLVGQTNDLRARLLEHYSHPSIAGVTHFFAEASATEQQRNPRERELIAEFNPPGNKTSEIANKYSVQEPNSTPRRHTTEIRI*
Ga0070766_1017175323300005921SoilMPFSGNCHTFDSSTLKALNDDGSVYGLFKVDLPFRPDHYTCLFVGQTNDLRTRLLEHYSHPSIAGVTHFFAEAIATEQQRNPRERELI
Ga0070765_10103502223300006176SoilMPFSGNCHTFDSSTLKALNDDGSVYGLFKVDLPFRPDHYTCLFVGQTNDLRARLLEHYSHPSIAGVTHFFAEASATEEQRNPRERELIAEFNPPGNKTSE
Ga0079222_1000221993300006755Agricultural SoilMPFSGDSQSFDSGTLNVLRNVGAVYGLFKTDRPFRPNHYTCLYIGQTNALRTDLLEHHGNPPIIGVTHFFAEAIASEEQRKQRAKELIHEFHPNGNKTSGGSS*
Ga0066653_1014591723300006791SoilFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0066660_1014083233300006800SoilMRSYAASVARQDLCVRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYRLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0079221_1011651223300006804Agricultural SoilMPFSGDCQLFDSATLKVLQDVAAVYGLFKTDRPFRPDHYTCLYVGQTDDLRTRLLEHYSSPPILGVTHFFAEAIVSEEQRKQREQDLLREFHPKGNKTGGGSSKRAPEVHLVLNS*
Ga0134082_1000298433300010303Grasslands SoilMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0134109_1009416123300010320Grasslands SoilMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKE
Ga0134067_1006509223300010321Grasslands SoilMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNNLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0134062_1057023823300010337Grasslands SoilMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREK
Ga0074044_1090245023300010343Bog Forest SoilFDSSTLQALNDIGSVYGLFKIDLPFRPDHYTCLFVGQTSDLRKGLLEQYDHPSITGVTHFFAEDSATEEQRNLRQNELIAEFNPPGNTAGIAYKPSV*
Ga0150983_1466194913300011120Forest SoilMRKVFQASLEADAERTTKMPFSGNCHTFDSSTLKALNDDGSVYGLFKVDLPFRPDHYTCLFVGQTNDLRARLLEHYSHPSIAGVTHFFAEASATEEQRNPRERELIAEFNPPGNKTSEIANK*
Ga0137383_1015382013300012199Vadose Zone SoilMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0137382_1056998123300012200Vadose Zone SoilMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIAT
Ga0137399_1003941433300012203Vadose Zone SoilVPRRRIYRAKALSNAGEVYGLFKIDLQFRPDHYACLYVGQTNDLRTRMHEHYNNPPITGVTHFFAEAIATEEQRKRPERELIREFDPTGNRSSGAGHNGAPEVHSLVKSW*
Ga0137377_1160684313300012211Vadose Zone SoilSARFMCTRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0134051_100816113300012398Grasslands SoilGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN*
Ga0132255_10169060023300015374Arabidopsis RhizosphereMPFSGNRHSFDSSNLKVLNNIGAVYGLFKRDLPFRSHHFVCLYVGQTNDLRARMLEHYDRPPISGVTDFFAEAIAIREQRIEREKELICEFNPTGNQTSELATTHQKSSGVQLLTNLPDGSSCVT*
Ga0187802_1000724613300017822Freshwater SedimentMPFSGNCSSLDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGVTHFFAEAIAREEQRIKREKELICEFNPTGNKTSGAGQNGPPEVRLVFNSY
Ga0187802_1001116223300017822Freshwater SedimentMPFSGNCHSFDSSTLKVLNDDGSVYGLFREDLPFRPDHYSCLFVGQTNDLRARLLEHYNDPSIAGVTHFFAEASATEQQRKLREQELIAEFNPAGNKTSGVANKCSL
Ga0187802_1007194233300017822Freshwater SedimentLSDVGSVYGLFKSDLPFRPDHYTCLFVGQTNGLKRRFLELYNNPSIAGVTHFFAEASANEEQRKLREKELIAEFNPPGNKTSGGC
Ga0187802_1026389213300017822Freshwater SedimentMPFSGNCSSFDSSALNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGITHFFAEAIAREEQRIKREKELICEFNPTGNKTSG
Ga0187820_102632323300017924Freshwater SedimentMPFSGNCSSFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGVTHFFAEAIAREEQRIKREKELICEFNPTGNKTSGAGQNGPPEVRLVFNSY
Ga0187820_103513523300017924Freshwater SedimentMPFSGNCSPFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLFVGQTNELRKRMLEHYSNPPIIGITHFFAEAIATEEQRKQREKELICEFNTPGNKTSGGC
Ga0187824_1036424013300017927Freshwater SedimentMPFSGDCHSFDSSTLKVLNDDGSVYGLFREDLPFRPDHYSCLFVGQTNDLRARLLEHYNDPSIAGVTHFFAEASATEQQRKLREQELIAEFNPAGNKTSGVANKCSL
Ga0187806_106719023300017928Freshwater SedimentMPFSGNCSSFDSSALNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGITHFFAEAIAREEQRKQREKELICEFNPTGNN
Ga0187806_138042013300017928Freshwater SedimentMPFSGNCSPFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLFVGQTNELRKRMLEHYSNPPIIGITHFFAEAIATEEQRKQREKELICEFNPTGNNTSAAGHNDPREVRLVFNSY
Ga0187825_1033689013300017930Freshwater SedimentMPFSGNCSPFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLFVGQTNELRKRMLEHYSNPPIIGITHFFAEAIATEEQRKQREKELICEFNPPGNKTSGDC
Ga0187825_1036708023300017930Freshwater SedimentMPFSGNCHSFDSSTLKELNNIGAVYGLFETDLPFRPNHYTCRYVGQTNDLRTRLLEHYNNHPVIGVTHFFDEAIATEEQRKQREKELICEFNPPGNKTSGDC
Ga0187814_1016075323300017932Freshwater SedimentLKVLNDVGTVYGLFKEHLPFRPDHYTCLFVGQTNDLRTRLLEHYNNPSSTGVTHFFAEASATEQQRKLREQELIAEFNPPGNKPNAGCEHLPSKSLTRLHRNRPQ
Ga0187814_1041799213300017932Freshwater SedimentMPFSGDCHAFDSSTLKMLNDVGTVYGLFKADRPFRPDHYTCLFVGQTNDLRTRLLEHYNNPSIAGVTHFFAEAGATEQERKLREKELIAEFNPPGNKTSGGWASKHTG
Ga0187801_1000620123300017933Freshwater SedimentMPFSGNCHSFDSSTLKVLSNVGAVYGLFKTDLPFRPDHYTCLFVGQTDDLKTRLLEHYNNPSIAGVTHFFAEASVTEQQRKLREKELIAEFNPPGNITSGSC
Ga0187801_1005782833300017933Freshwater SedimentMPFSGNCHSFDSPTLKGLDDVGSVYGLFKVDLPYRPDHYTCLLVGQTNDLRMRLLESYNNPPIAGVTHFFAEASATEQQRIQR
Ga0187801_1027296123300017933Freshwater SedimentMPFSGNCHSFDSSTLKVLSNIGAVYGLFKTDLPFRPDHYTCLYVGQTNELRTRMLEHYNSLPIIDVTHFFAEAIATEEQRIQREKELICESTGNKTSGQATMAH
Ga0187801_1036135713300017933Freshwater SedimentNCHSFDSSTLKELNNIGAVYGLFETDLPFRPNHYTCRYVGQTNDLRTRLLEHYNNHPVIGVTHFFDEAIATEEQRKQREKELICEFNPPGNKTSGDCYK
Ga0187803_1000030173300017934Freshwater SedimentMPFSGNCQSFDSSTLKVQDDVGAVYGLFKADLPFRPDHYTCLFVGQTNDLRTRLLEHYNNPSIAGVTHFFAEVSATEQQRKPREKELIAEFNPPGNKTSGSC
Ga0187808_1001877333300017942Freshwater SedimentMPFSGNCSPFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLFVGQTNELRKRMLEHYSNPPIIGITHFFAEAIATEEQRKQREKELICEFNPTGNNTSAAGHNDPREVRSVFNSY
Ga0187808_1037916013300017942Freshwater SedimentMRKVSQTGLEVDGKDNKMPFAGNCHAFDSATLKVLSDVGSVYGLFKTDLPFRPDHYTCLFVGQTNDLRARFLELYNKPAIAGVTHFFAEASANEEQRKLREKELIAEFNPPGNATSG
Ga0187819_1001864613300017943Freshwater SedimentMPFSGNCSSFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGVTHFFAEAIAREEQRIKCEKELICEFNPTGNKTSGAGQNGPPEVRLVFNSY
Ga0187819_1008893723300017943Freshwater SedimentMPFSGNCHSFDSSTSQMLSDVGAVYGLFKTDLPFRPGHYTCLFVGQTNDLRTRLLEHYNHPSIAGVTHFFAEAGRTEQQRKLREKELIADFNPPGNKTSRGC
Ga0187817_1003016043300017955Freshwater SedimentVSQASIEVDVERTTYMPFSGNCSSFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGVTHFFAEAIAREEQRIKREKELICEFNPTGNKTSGAGQNGPPEVRLVFNSY
Ga0187817_1018450923300017955Freshwater SedimentMPFSGNCHSFDSPTLKALNDVGSVYGLFKVDLPYRPDHYTCLLVGQTNDLRMRLLEYYNDPPIAGVTHFFAEATAIEQQRILREKELIAEFSPPGNKISGCC
Ga0187817_1068791623300017955Freshwater SedimentVSQASIEVDVERTTYMPFSGNCSSFDSSTLNALSDVGSVYGLFKTDLPFRPDHHTCLYVGQTNDLRTRMLEHYNNPPIIGITHFFAEAIAREEQRIKREKELICEFNPTGNKTSGQATI
Ga0187816_1009426423300017995Freshwater SedimentMPFSGNCSSFDSSALNALSDVGSVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYNNPPIIGITHFFAEAIPREEQR
Ga0187816_1018765723300017995Freshwater SedimentSFDSSTSQMLSDVGAVYGLFKTDLPFRPGHYTCLFVGQTNDLRTRLLEHYNHPSIAGVTHFFAEAGRTEQQRKLREKELIADFNPPGNKTSGGC
Ga0187816_1050885713300017995Freshwater SedimentMPFSGNCHSFDSSTLKVLNDDGSVYGLFREDLPFRPDHYSCLFVGQTNDLRARLLEHYNDPSIAGVTHFFAEASATEQQRKLREQELIAEFN
Ga0187804_1029631113300018006Freshwater SedimentMPFSGNCSPFDSSTLNALSDVGSVYGLFKTDLPFRPDHYTCLFVGQTNELRKRMLEHYSNPPIIGITHFFAEAIATEEQRKQREKELICEFNPTGNNTSAAGHNDPQEVRLV
Ga0187804_1034424913300018006Freshwater SedimentMPFSGNRHSFDSSTLKVQNDAGSVYGLFKGDLPFRPDHYICLLVGQTNDLRTRLLEHYNDPSIAGVTHFVAEASATEQQRKLPICRPTWRRS
Ga0187804_1049044213300018006Freshwater SedimentMPFSGNCHSFDSSTLKELNNIGAVYGLFETDLPFRPNHYTCRYVGQTNDLRTRLLEHYNNHPVIGVTHFFDEAIATEEQRKQREKELICEFNPPGNKTSG
Ga0187804_1052038313300018006Freshwater SedimentNCHSFDSSTLKVLNDDGSVYGLFREDLPFRPDHYSCLFVGQTNDLRARLLEHYNDPSIAGVTHFFAEASATEQQRKLREQELIAEFNPAGNKTSGVANKCSL
Ga0187805_1022941713300018007Freshwater SedimentMPFSGNCHSFDSPTLKGLDDVGSVYGLFKVDLPYRPDHYTCLLVGQTKDLRMRLLESYNNPPIAGVTHFFAEASATEQQRIQREKELIAEFSPPGNKTNGSC
Ga0187810_1001178543300018012Freshwater SedimentMPFSGDCRSFDPPTLHALNDVGSVYGLFKTDLPFRPDHYTCLFVGETDDLKTRLLEHYEHPSITGVTHFFAEASSTEQQRKPRERDLIAEFNPPGNRTIGVTSKQAG
Ga0187810_1010372023300018012Freshwater SedimentMLPGMRQISQTSLEVDAERATKMPFSGNCHSFDSSTLKVLNDVGSVYGLFKTDLPFRADHYTCLFVGQTEDLRTRLLEHYNHPSIAGVTHFFAEASVTEQQRKLREKELIAEFNPPGNKTSGGC
Ga0066655_1000267243300018431Grasslands SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0066662_1037983313300018468Grasslands SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0210401_1027440223300020583SoilMPFSGDCHTFDSSTLKALDDGGSVYGLFKTDLPFRPDHYTCLFVGQTNDLKARLLEHYNHPAIAGVTHFFAEASATEQQRKPRERELIAEFNPSGNKTSEIARKYSV
Ga0210401_1080733423300020583SoilMPFSGNCQTFDSSTLKALNDDGSVYGLFKADLPFRPDHYTCLLVGQTNDLRARLLEHYSHPSIAGVTHFFAEASATEQQRNPRERELIAEFNPPGNKTSEIANKYSVQEPNSTPRR
Ga0210394_10000399253300021420SoilMPFSGNCHTFDSSTLKALNDDGSVYGLFKVDLPFRPDHYTCLFVGQTNDLRARLLEHYSHPSIAGVTHFFAEASATEEQRNPRERELIAEFNPPGNKTSEIANK
Ga0210390_10001669153300021474SoilMPFSGDCHSFDSSTLKALNDIGSVYGLFKTDLPFHPDHYTCLFVGQTSDLRKGLLEQYDHPSITGVTHFFAEDGATEEQRKLRQKQLIAEFNPPGNKTDGIVCKPSV
Ga0247664_100168383300024232SoilMPFSGNRHSFDSSNLKVLNNIGAVYGLFKRDLPFRSHHFVCLYVGQTNDLRARMLEHYDRPPISGVTDFFAEAIVIREQRIEREKELICEFNPTGNQTSELATTHQKSSGVQLLTNLPDGSSCVT
Ga0207685_1025752313300025905Corn, Switchgrass And Miscanthus RhizosphereMPFSGDCHSFDCLTLKVLSNVGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTHMHEHYNNPPIIGVTHFFAETIATEEERKQRENELIT
Ga0209265_109658613300026308SoilPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0209268_1001111143300026314SoilLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0209268_105742433300026314SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLGHYKNPPIIGVTHFFAEAIATEEQ
Ga0209686_101742343300026315SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNNLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0209155_101524513300026316SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNNLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKEIIVYRIEDRENRHFCGMPT
Ga0209266_104504113300026327SoilPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0209158_100203833300026333SoilMPFSGDCHSFDSSTLKVLNNIGAVYRLFKTDLPFRPDHYTCLYVGQANDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERKN
Ga0209808_106554333300026523SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATE
Ga0209160_114703823300026532SoilMRSYAASVARQDLCVRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNNLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERK
Ga0209156_1003439253300026547SoilMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRPDHYTCLYVGQTNNLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKEIIVYRIEDRENRHFC
Ga0209577_1026160623300026552SoilMRSYAASVARQDLCVRQISQTSFEVEAERTTKMPFSGDCHSFDSSTLKVLNNIGAVYGLFKTDLPFRLDHYTCLYVGQTNDLRTRMLEHYKNPPIIGVTHFFAEAIATEEQRLQREKERK
Ga0209523_107726913300027548Forest SoilMPFSGNCHSFDLAALKALSNAGEVYGLFKVDLPFRPDHYTCLFVGQTNDLRTRMLEHYNTPPITGVTHFFAEAIATEEQRIQRERELIREFDPTGNKTSGICHKGPLEDVRAFGDPK
Ga0209178_100333353300027725Agricultural SoilMPFSGDSQSFDSGTLNVLRNVGAVYGLFKTDRPFRPNHYTCLYIGQTNALRTDLLEHHGNPPIIGVTHFFAEAIASEEQRKQRAKELIHEFHPNGNKTSGGSS
Ga0209178_112701823300027725Agricultural SoilMPFSGDCQLFDSATLKVLQDVAAVYGLFKTDRPFRPDHYTCLYVGQTDDLRTRLLEHYSSPPILGVTHFFAEAIVSEEQRKQREQDLLREFHPKGNKTGGGSSKRAPEVHLVLNS
Ga0209248_1016546923300027729Bog Forest SoilSTLKALNDSGSVYGLFKVDLPFRPDHYTCLFVGQTSDLKTRLLDQYNHPSITGVTHFFAEDSANEQQRNLRENELIAEFNPPGNKKSELTYKPFVEAPPKSTPHN
Ga0209773_1001730433300027829Bog Forest SoilMPFSGNSHSFDSSTLKALNDSGSVYGLFKVDLPFRPDHYTCLFVGQTSDLKTRLLDQYNHPSITGVTHFFAEDSANEQQRNLRENELIAEFNPPGNKKSELTYKPFVEAPPKSTPHN
Ga0209062_1001036153300027965Surface SoilMPFSGNCHSFDSSTLDSSTLKALNDVGMVYGLFKEDLPFRPDHYTCLFVGQTNNLRARLLEHYSNRSIAGVTHFFAETSATEQQQKLREKELIAEFNPSGNKN
Ga0247675_107599913300028072SoilMPFSGNRHSFDSSNLKVLNNIGAVYGLFKRDLPFRSHHFVCLYVGQTNDLRARMLEHYDRPPISGVTDFFAEAIVIREQRIEREKELICEFNPTGNQTSEL
Ga0247662_107882313300028293SoilMPFSGNRHSFDSSNLKVLNNIGAVYGLFKRDLPFRSHHFVCLYVGQTNDLRARMLEHYDRPPISGVTDFFAEAIVIREQRIEREKELICEFNPTGNQTSELA
Ga0308309_1088711113300028906SoilMPFSGNCHTFDSSTLKALNDDGSVYGLFKVDLPFRPDHYTCLFVGQTNDLRARLLEHYSHPSIAGVTHFFAEASATEEQRNPRERELIAEFNPPGNKT
Ga0307475_1003374923300031754Hardwood Forest SoilMPFNGNCHSFDSSTLKALNNIGTVYGLFKTDLPFRPDHYTCLYVGQTNDLRTHMLEYYNNPPIIGVTHFFAEAIATEEQRIQREKELIVEFNPPGNKTSGGC
Ga0307471_10271428513300032180Hardwood Forest SoilLFDLSGLKALSNAGEVYGLFKVDLPFRPNHYTCLYVGQTNDLRTRMLEHYDTPPITRVTHFFAEAIATEEQRIQRERELILEFDPTGNRSSDPGHHGPPEVPSTSSS
Ga0335085_1006372823300032770SoilMPFSGDCRSFDPPTLHVLNDVGSVYGLFKTDLPFRPDHYTCLFVGETDDLKTRLLEHYEHPSITGVTHFFAEASSTEQQRKLRERELIAEFNPPGNRTIGVTGKQAG
Ga0335085_1039882023300032770SoilMPFSGVCHSFDPSTLKLLNDAGSVYGLFKTDLPFRPDHYTCLFVGETDDLRARLLEHYNHPSISGVTHFFAEASAPEQQRKLRENELIAEFNPPGNKTNDIAAERSV
Ga0335082_1002870433300032782SoilMRKVFQTGIAVAAERKTKMPFSGVCHSFDPSTLKLLNDAGSVYGLFKTDLPFRPDHYTCLFVGETDDLRARLLEHYNHPSISGVTHFFAEASAPEQQRKLRENELIAEFNPPGNKTNDIAAERSV
Ga0335082_1004599453300032782SoilMPFSGDCHSFDPSTLKELNDVGSVYGLFKSDLPFRPDHYTCLFVGETNELRTRLLQDYSHPPIPGVTHFFAETTATEQRRTLREKELIAEFSPPGNKTDDIAAQRSV
Ga0335082_1022654123300032782SoilMPFSGDCHSFDSLSLRALDDLGAVYGLFKTDLPFRPNHYTCLFVGQTNNLRARLLEHYTNPSIAGVTHFFAEAGASEPQRKLREMELISEFNPPGNSTSRGC
Ga0335070_1015710413300032829SoilMPFSGDCHPFDCLSLRALDDLGAVYGLFKTDLPFRPNHYTCLFVGQTNNLRARLLEHYTNPSIAGVTHFFAEAGASEPQRKLREMELISEFNPPGNSAGRGC
Ga0335081_1178950523300032892SoilMPFSGNCHSFDSSTLKVLSDVGSVFGLFKTDLPFRPDHYTCLFVGQTNGLRTHFLELYNNPSIAGVTHFFAEASANEEYRKLREKELIAEFNPPGNKATGVANNSD
Ga0335069_1063604933300032893SoilQAAGRRVLATEDVPVLRPDHSTRKTLLPGVRKVSETGIGIDVERRAKVPFSGDCHSFDPSTLKVLNGAGSVYGLFKSDLPFRPDHYTCLLVGETDDLRARLLQLYSHPTIAGVTHFFAEPSATEGQRRVRAKELIAEFNPPGNKTEDVANERSV
Ga0335071_1003452653300032897SoilMPFSGDCRSFDPPTLHVLNDVGSVYGLFKTDLPFRPDHYTCLFVGETDDLKTRLLEHYEHPSITGVTHFFAEASSTEQQRKLRERDLIAEFNPPGNRTIGVTGKQAG
Ga0335076_1034226823300032955SoilMSASLADCVERRKSLLALEFAMPFSGDCHSFDSSTLKELNGEGAVYGLFETDLPFRPDHYTCLYVEQTGDLRTAMLEAYDNPPAIGVTHFFDEAIASEELGNQREKELICEFNPIGNRTKDAAPKGPPDEAAPL
Ga0335084_1050009533300033004SoilMPFNGDCHPFDCLSLRALDDLGAVYGLFKTDLPFRPNHYTCLFVGQTNNLRARLLEHYTNPSIAGVTHFFAEAGASEPQRKLREMELISEFNPPGNSTSRGC
Ga0326727_1011690633300033405Peat SoilMPFSGDCHSFDSSTLKMLKDVGSVYGLFRVDLPFRPDHYTCLFVGQTDDLRARLLEHYSNPSIAGVTHFFAEASASEQERKLREKELIAEFNPSGNKMRK
Ga0326727_1041575923300033405Peat SoilAMSGASLEADGDRRRAMPFSGNCHSFDSSTLKELNGAGAVYGLFKTDRPFRPDHYTCLYVGQTSNLRTTLLEDYDNPPIIGVTHFFAEAIASEEQRNRREKELLCEFNPTGNRTSDAAPNPPDVHLVSSSWNAGSGQK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.