Metagenome / Metatranscriptome Family F092404

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092404
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	54 residues
Representative Sequence	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWVGVSLGDFAPLQ
Number of Associated Samples	77
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	44.86 %
% of genes near scaffold ends (potentially truncated)	20.56 %
% of genes from short scaffolds (< 2000 bps)	72.90 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.393 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (18.692 % of family members)
Environment Ontology (ENVO)	Unclassified (23.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.748 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.44% β-sheet: 0.00% Coil/Unstructured: 47.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00581	Rhodanese	43.93
PF02646	RmuC	14.95
PF00753	Lactamase_B	12.15
PF00583	Acetyltransf_1	3.74
PF02771	Acyl-CoA_dh_N	2.80
PF00072	Response_reg	1.87
PF08028	Acyl-CoA_dh_2	1.87
PF00490	ALAD	1.87
PF08238	Sel1	0.93
PF03328	HpcH_HpaI	0.93
PF07568	HisKA_2	0.93
PF01513	NAD_kinase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	14.95
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	4.67
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	1.87
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.93
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.93
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.93
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.39 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.39 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.39 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.60 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.06 %
Unclassified	root	N/A	5.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.80 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.80 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10003970	All Organisms → cellular organisms → Bacteria → Proteobacteria	10540	Open in IMG/M
3300002245\|JGIcombinedJ26739_100124901	All Organisms → cellular organisms → Bacteria	2425	Open in IMG/M
3300004080\|Ga0062385_10876974	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300004092\|Ga0062389_101033847	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300004092\|Ga0062389_104686998	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300004092\|Ga0062389_104786470	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300004635\|Ga0062388_102487025	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005332\|Ga0066388_105599899	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005458\|Ga0070681_10123584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2521	Open in IMG/M
3300005534\|Ga0070735_10135850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1530	Open in IMG/M
3300005537\|Ga0070730_10080684	All Organisms → cellular organisms → Bacteria	2279	Open in IMG/M
3300005538\|Ga0070731_10424897	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300005541\|Ga0070733_10455772	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300005602\|Ga0070762_10705512	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300006050\|Ga0075028_100905914	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006176\|Ga0070765_100994716	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300006638\|Ga0075522_10001492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17706	Open in IMG/M
3300006893\|Ga0073928_10894807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300009400\|Ga0116854_1068107	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300009672\|Ga0116215_1458477	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300010048\|Ga0126373_10157087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2168	Open in IMG/M
3300010048\|Ga0126373_11197288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300010371\|Ga0134125_11165416	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300010376\|Ga0126381_100468144	All Organisms → cellular organisms → Bacteria → Proteobacteria	1771	Open in IMG/M
3300014156\|Ga0181518_10016424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5309	Open in IMG/M
3300014201\|Ga0181537_10004191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12037	Open in IMG/M
3300014495\|Ga0182015_10009017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9369	Open in IMG/M
3300014495\|Ga0182015_10138063	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300014495\|Ga0182015_10879622	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300014501\|Ga0182024_10000157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	155269	Open in IMG/M
3300014501\|Ga0182024_10020089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12234	Open in IMG/M
3300014501\|Ga0182024_10101076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4199	Open in IMG/M
3300014501\|Ga0182024_10257220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2337	Open in IMG/M
3300014501\|Ga0182024_10327879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2010	Open in IMG/M
3300014501\|Ga0182024_11272251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300014501\|Ga0182024_12627674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300014657\|Ga0181522_10501165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300015197\|Ga0167638_1107698	Not Available	524	Open in IMG/M
3300017822\|Ga0187802_10291388	Not Available	635	Open in IMG/M
3300017942\|Ga0187808_10056329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1670	Open in IMG/M
3300017955\|Ga0187817_10188920	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300017973\|Ga0187780_10500003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300018007\|Ga0187805_10190008	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300018042\|Ga0187871_10027348	All Organisms → cellular organisms → Bacteria	3603	Open in IMG/M
3300018062\|Ga0187784_10032546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4210	Open in IMG/M
3300018085\|Ga0187772_10517673	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300018086\|Ga0187769_10194859	All Organisms → cellular organisms → Bacteria → Proteobacteria	1497	Open in IMG/M
3300018090\|Ga0187770_11395272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300020581\|Ga0210399_11331161	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300021181\|Ga0210388_10484478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1086	Open in IMG/M
3300021181\|Ga0210388_10899950	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300021401\|Ga0210393_10254678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1424	Open in IMG/M
3300021402\|Ga0210385_10581607	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300021403\|Ga0210397_10860666	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300021406\|Ga0210386_11591729	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300021407\|Ga0210383_10227634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1598	Open in IMG/M
3300021420\|Ga0210394_11720848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300021433\|Ga0210391_10413658	Not Available	1058	Open in IMG/M
3300021433\|Ga0210391_11413675	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300021474\|Ga0210390_11659760	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300021477\|Ga0210398_10468540	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300021477\|Ga0210398_11209837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300021479\|Ga0210410_10076498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2937	Open in IMG/M
3300021560\|Ga0126371_10020914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6036	Open in IMG/M
3300021560\|Ga0126371_11085232	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300021560\|Ga0126371_11751945	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300021560\|Ga0126371_12671496	Not Available	605	Open in IMG/M
3300025627\|Ga0208220_1116767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300027516\|Ga0207761_1098839	Not Available	569	Open in IMG/M
3300027662\|Ga0208565_1222047	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027854\|Ga0209517_10000192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	110896	Open in IMG/M
3300027867\|Ga0209167_10007212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5382	Open in IMG/M
3300028773\|Ga0302234_10519690	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300028789\|Ga0302232_10379907	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300028906\|Ga0308309_10860938	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300029636\|Ga0222749_10708311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300029943\|Ga0311340_11166481	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300029999\|Ga0311339_10038745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6623	Open in IMG/M
3300031234\|Ga0302325_11023723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1125	Open in IMG/M
3300031234\|Ga0302325_11295217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	959	Open in IMG/M
3300031525\|Ga0302326_11963314	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300031525\|Ga0302326_13475923	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031595\|Ga0265313_10371082	Not Available	565	Open in IMG/M
3300031708\|Ga0310686_107107334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2399	Open in IMG/M
3300031708\|Ga0310686_115165192	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031715\|Ga0307476_10521517	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300031962\|Ga0307479_11124089	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300032770\|Ga0335085_10000736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	84496	Open in IMG/M
3300032770\|Ga0335085_10947136	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300032782\|Ga0335082_10264694	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300032783\|Ga0335079_10540569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300032783\|Ga0335079_10748741	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300032805\|Ga0335078_10086764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4547	Open in IMG/M
3300032805\|Ga0335078_10115638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3846	Open in IMG/M
3300032805\|Ga0335078_10686565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1272	Open in IMG/M
3300032895\|Ga0335074_10045894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6043	Open in IMG/M
3300032895\|Ga0335074_10091966	All Organisms → cellular organisms → Bacteria	4024	Open in IMG/M
3300032895\|Ga0335074_10434453	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300032895\|Ga0335074_11627403	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300032896\|Ga0335075_10050224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5814	Open in IMG/M
3300032898\|Ga0335072_11735001	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300032955\|Ga0335076_10479803	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300032955\|Ga0335076_11550436	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300033134\|Ga0335073_10159228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2850	Open in IMG/M
3300033134\|Ga0335073_10402129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1601	Open in IMG/M
3300033134\|Ga0335073_11640399	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300033158\|Ga0335077_12004076	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.05%
Aquatic	Environmental → Aquatic	14.02%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.57%
Freshwater	Environmental → Aquatic → Freshwater	12.15%
Peat	Environmental → Terrestrial → Peat	7.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	32.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.15%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.48%
Loam	Environmental → Terrestrial → Soil → Loam	6.54%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	23.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.87%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	18.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.95%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	6.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100039708	3300000567	Peatlands Soil	MSDTTLFLVTGALMLAAILIPVPSRGRTVLWVLMLSLIVLMWIGVSIEGYGPLN*
JGIcombinedJ26739_1001249012	3300002245	Forest Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWAGVSLGGFSPLP*
Ga0062385_108769741	3300004080	Bog Forest Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWVGVSLGDFAPMQ*
Ga0062389_1010338472	3300004092	Bog Forest Soil	MSETTLFLVTGCLLLASVLIPVPPRGRTVLWIVMLGLIVLIWAGVSLGDFAPLP*
Ga0062389_1046869982	3300004092	Bog Forest Soil	AASMSETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLLWVGISLGDFAPLP*
Ga0062389_1047864702	3300004092	Bog Forest Soil	AASMSETTLFLVTGCLLLAAVLIPVPPRGRTVLWIVMLGLIVLIWAGISLGDFAPLP*
Ga0062388_1024870251	3300004635	Bog Forest Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWVGVSLGDFA
Ga0066388_1055998992	3300005332	Tropical Forest Soil	MSETSLFLVTGCLLLAAVLIPVPPRGRTVLWIVMLGLIVVLWAGASLGDLGPPQ*
Ga0070681_101235842	3300005458	Corn Rhizosphere	MLAVNMSETTLFLVTGCLLLAAILIPVPPRGRTVLWIVMLGFIVTLWVGVSLGDFNPLE*
Ga0070735_101358502	3300005534	Surface Soil	MSDTTLFLVTGALMLAAILIPVPPRTRTALWVLMLGMIVLMWIGVSVEGYGPFK*
Ga0070730_100806844	3300005537	Surface Soil	MSDTTLFLVTGALMLAAILIPVPPRGRTMLWVLMLGLIVMMWIGVSLEGYGPLN*
Ga0070731_104248972	3300005538	Surface Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRVILWVVMLGLIVTLWAGVSLGDFAPLP*
Ga0070733_104557721	3300005541	Surface Soil	VTGCLLLAAVLIPVPPRLRTALWVVMLGLIVLLWVGVSLGDLNPLP*
Ga0070762_107055121	3300005602	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRMILWAVMLGLIVTLWAGVTLGDFAPLQ*
Ga0075028_1009059142	3300006050	Watersheds	MSDTSLFLVTGALMLAAILIPVPPRGRTMLWLLMLGLIVLMWVGVSLEGYGPLN*
Ga0070765_1009947162	3300006176	Soil	MTETTLFLATGALLLAAVLIPVPPRGRTVLWVVMLGFIVMLWVGISLGDFAPLD*
Ga0075522_1000149217	3300006638	Arctic Peat Soil	MSETTLFLVTGCLLLAAILIPVPPRGRTILWVVMLGLIVALWTGVTLGDIAPLQ*
Ga0073928_108948072	3300006893	Iron-Sulfur Acid Spring	MSDTTLFLVTGALMLAAILIPVPSPGRTMLWVVMLGLIVLMWVGV
Ga0116854_10681072	3300009400	Soil	MLAANMSETSLFLATGCLLLAAILIPVPPRGRTILWVVMLGFIVTLWVGVALGDLAPLESPPSVHAAPPSTG*
Ga0116215_14584771	3300009672	Peatlands Soil	RREMSDTTLFLVTGALMLAAILIPVPSRGRTVLWVLMLSLIVLMWIGVSIEGYGPLN*
Ga0126373_101570872	3300010048	Tropical Forest Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWVGASLGDISAPPPH*
Ga0126373_111972882	3300010048	Tropical Forest Soil	MTETSLFLVTGCLLLAAVLIPVPPRGRTVLWIVMLGLIVVLWAGASLGDFSPLP*
Ga0134125_111654162	3300010371	Terrestrial Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWTGVTLGDMVPLQ*
Ga0126381_1004681442	3300010376	Tropical Forest Soil	MTETALFLATAALLLAAVLIPVPPRGRLVLWIVMLGVILVMWIGMTLGQFALLG*
Ga0181518_100164245	3300014156	Bog	MSDTTLFLVTGALMLAAILIPVPPPGRTALWIVMLGLIVLMWIGVSIEGYGPFN*
Ga0181537_100041914	3300014201	Bog	MSETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLLWAGISLGDFAPLP*
Ga0182015_100090176	3300014495	Palsa	VNEATLSLVSVCLMLAAVLIPVPPGGRTILWIVMLGLIVTLWGTSLADMM*
Ga0182015_101380634	3300014495	Palsa	MNEATLSLVSGCLLLAALLIPVPPRGRAILWVVLIVTLWTGTSLADMIY*
Ga0182015_108796222	3300014495	Palsa	MGETTVFIVTICLLLAGVMIPVPPRGRTILWSVMLGVIVIAWVGVSLREFAP*
Ga0182024_10000157133	3300014501	Permafrost	MSDTTLFLVTGALMLAAILIPVPPRGRTILWVLMLGLIVLMWIGVSIEGFGPFG*
Ga0182024_1002008910	3300014501	Permafrost	MSETTLFLVTGCLLLAAVLIPVPPRGRTVLWFVMLGLIVVLWAGVSLGDFSPLP*
Ga0182024_101010764	3300014501	Permafrost	VSVCLMLAAVLIPVPPGGRTILWIVMLGLIVTLWGTSLADMM*
Ga0182024_102572202	3300014501	Permafrost	MNEATLSLVSGCLLLAALLIPVPPRGRTILWIVMLGLIVTLWTGKTFAYIQ*
Ga0182024_103278792	3300014501	Permafrost	MSETSLFLVTGCLLLAAILIPVPPRGRTILWVVMLGLIVTLWTGVSLGFAPME*
Ga0182024_112722512	3300014501	Permafrost	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWFVMLGLIVTLWAGVSLGDFSSLP*
Ga0182024_126276742	3300014501	Permafrost	MSDTTLFLVTGALMLAAILIPVPSPGRTMLWVVMLGLIVLMWVGVSLEGFG
Ga0181522_105011652	3300014657	Bog	MSETSLFLVTGCLLLAAVLIPVPPRLRTALWIVMLGLIVVIWVGASLGDFAPLK*
Ga0167638_11076981	3300015197	Glacier Forefield Soil	MLAANMSETSLFLVTGCLLLAAILIPVPPRGRTVLWVVMLGFIVTLWVGVSLGDLAPLEN
Ga0187802_102913881	3300017822	Freshwater Sediment	MTETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLLWVGISLGDFSPLP
Ga0187808_100563292	3300017942	Freshwater Sediment	MTETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLLWVGISLGDFAPLP
Ga0187817_101889201	3300017955	Freshwater Sediment	VTGALMLAAILIPVPPRARTALWVLMLSLIVVMWVGVSLEGYGPFN
Ga0187780_105000031	3300017973	Tropical Peatland	MSDTSLFLVTGALMLAAILIPVPPRARTALWMLMLSLIVIMWIGVS
Ga0187805_101900082	3300018007	Freshwater Sediment	MSDTSLFLVTGALMLAAILIPVPPRTRTALWVLMLGLIVVMWIGVSLEGYGPLN
Ga0187871_100273484	3300018042	Peatland	MTDTTLFLVTGALMLAAVLIPVPPPGRTALWIVMLGLIVLMWIGVSIEGYGPFG
Ga0187784_100325462	3300018062	Tropical Peatland	MSDTTLFLVTGALMLAAVLIPVPPPGRTMLWVVMLGLIVLMWIGVSIEGFGPLNNW
Ga0187772_105176732	3300018085	Tropical Peatland	MSDTSLFLVTGALMLAAILIPVPSRARTALWVLMLSLIVIMWIGVSLEGYGPFN
Ga0187769_101948593	3300018086	Tropical Peatland	QRMPDAAMSDTTLFLVTGALMLAAVLIPVPSPGRTMLWIVMLGLIVLMWIGVSLEGYGPF
Ga0187770_113952721	3300018090	Tropical Peatland	MSDTTLFLVTGALMLAAVLIPVPSPGRTMLWIVMLGLIVLMWIGVSLEGYGPFN
Ga0210399_113311612	3300020581	Soil	MSDTTLFLVTGALMLAAILIPVPPRGRTALWVLMLSLIVLMWIGVSIEGYGPLN
Ga0210388_104844782	3300021181	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWAGVSLGGFSPLP
Ga0210388_108999501	3300021181	Soil	MSDTSLFLVTGALMLAAILIPVPPKTRTALWVLMLSLIVLMWIGVSIEGFGPFN
Ga0210393_102546782	3300021401	Soil	MSETSLFLVTGCLLLAAVLIPVPPRGRTILWIVMLGLIVVLWAGASLGDLGPAQ
Ga0210385_105816072	3300021402	Soil	MSDTTLFLVTGALMLAAILIPVPPRARTMLWVLMLGAIVLMWIGISIEGFGPLG
Ga0210397_108606661	3300021403	Soil	MSDTSLFIVTGALMLAAILIPVPPRGRTMLWVLMLSLIVMMWIGVSIEGYGPFN
Ga0210386_115917291	3300021406	Soil	PVRDTLAASMTETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLIWAGITLGDFAPLP
Ga0210383_102276342	3300021407	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTLLWVVMLGLIVTLWIGASLGDFAPL
Ga0210394_117208482	3300021420	Soil	MSETTLLLVTGCLLLAAVLIPVPPRGRTLLWVVMLGLIVTLWIGASLDDFAPL
Ga0210391_104136582	3300021433	Soil	MSDTTLFLVTGALMLAAILIPVPPPGRTALWIVMLGLIVLMWIGVSIEGYGPFN
Ga0210391_114136752	3300021433	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRMILWAVMLGLIVTLWAGVTLGDFAPLQ
Ga0210390_116597602	3300021474	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVILWAGVSLGDFAPLH
Ga0210398_104685402	3300021477	Soil	MLAASMSETSLFLVTGCLLLAAVLIPVPPRGRTILWIVMLGLIVTLWVGVSLGDFAPLP
Ga0210398_112098372	3300021477	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWTGVTLGDIAPLE
Ga0210410_100764983	3300021479	Soil	MSETTLLLVTGCLLLAAVLIPVPPRGRTLLWVVMLGLIVTLWIGASLGDFAPL
Ga0126371_100209142	3300021560	Tropical Forest Soil	MSETSLFLVTGCLLLAAVLIPVPPRGRTVLWIVMLGLIVVLWAGASLGDLGPPQ
Ga0126371_110852322	3300021560	Tropical Forest Soil	YKLAASMSETSLFLVTGCLLLAAVLIPVPPRGRTVLWIVMLGLIVVLWAGASLGDFSPLP
Ga0126371_117519452	3300021560	Tropical Forest Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWVGASLGDISAPPPH
Ga0126371_126714962	3300021560	Tropical Forest Soil	MTETALFLATAALLLAAVLIPVPPRGRLVLWIVMLGVILVMWIGMTLGQFALLG
Ga0208220_11167672	3300025627	Arctic Peat Soil	MSETTLFLVTGCLLLAAILIPVPPRGRTILWVVMLGLIVALWTGVTLGDIAPLQ
Ga0207761_10988391	3300027516	Tropical Forest Soil	MSETTLFLVTGCLLLAAVLIPVPSRGRTVLWVVMLGLIVVLWAGV
Ga0208565_12220472	3300027662	Peatlands Soil	DTTLFLVTGALMLAAILIPVPSRGRTVLWVLMLSLIVLMWIGVSIEGYGPLN
Ga0209517_1000019212	3300027854	Peatlands Soil	MSDTTLFLVTGALMLAAILIPVPSRGRTVLWVLMLSLIVLMWIGVSIEGYGPLN
Ga0209167_100072125	3300027867	Surface Soil	MSDTTLFLVTGALMLAAILIPVPPRTRTALWVLMLGMIVLMWIGVSVEGYGPFK
Ga0302234_105196902	3300028773	Palsa	TLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWVGVSLGDFAPLQ
Ga0302232_103799071	3300028789	Palsa	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWVGVSLGDFAPLQ
Ga0308309_108609382	3300028906	Soil	MTETTLFLATGALLLAAVLIPVPPRGRTVLWVVMLGFIVMLWVGISLGDFAPLD
Ga0222749_107083112	3300029636	Soil	DSVSTVADRSRIPMTETTLFLATGALLLAAMLIPVPPRGRTVLWVVMLGFIVMMWVGISLGDLAPLD
Ga0311340_111664811	3300029943	Palsa	FDQNVASLAHQPAASMSETSLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWAGASLGDFAPMP
Ga0311339_100387457	3300029999	Palsa	MSETTLFLVTGCLLLAAVLIPVPPSGRTILWVVMLGLIVVLWVGVSLGDFAPLQ
Ga0302325_110237232	3300031234	Palsa	MSDTTLFLVTGALMLAAILIPVPPPGRTALWIVMLGLIVLMWISASIEGYGPFN
Ga0302325_112952172	3300031234	Palsa	MSETSLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWAGASLGDFAPMP
Ga0302326_119633142	3300031525	Palsa	TTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVVLWVGASLGDFTAVP
Ga0302326_134759232	3300031525	Palsa	MGETTVFIVTICLLLAGVMIPVPPRGRTILWFVMLGVIVIAWVGVSLREFAP
Ga0265313_103710822	3300031595	Rhizosphere	MSETSLFLVTGCLLLAAVLIPVPARLRTALWIVMLGLIVVLWAGVSLGDFSPLP
Ga0310686_1071073342	3300031708	Soil	MRETTLLLVTGCLLLAAVMIPVPPRGRTILWIFMLGVIVFLWVGISLGDFAPLP
Ga0310686_1151651921	3300031708	Soil	MSETSLFLVTGCLLLAAVLIPVPPRGRTILWIVMLGMIVTLWVGVTLGDFAPLP
Ga0307476_105215171	3300031715	Hardwood Forest Soil	VTGALMLAAILIPVPPRGRTALWVLMLSLIVLMWIGVSIEGYGPLN
Ga0307479_111240892	3300031962	Hardwood Forest Soil	LTLPKAWDKLVTGMSETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLLWAGVSLGDFSPP
Ga0335085_100007369	3300032770	Soil	MSETSLFMVTGCLLLAAVLIPVPPRLRTALWVVMLGLIVVLWVSVSLGDFAPLP
Ga0335085_109471361	3300032770	Soil	MSETTLFLVTGCLLLAAVLIPVPPRLRTALWVVMLGLIVVLWVGVSLGDFAPLP
Ga0335082_102646942	3300032782	Soil	MKETSLFLVSGCLLLAAMLIPVPPRGRTVLWVVMLGLIVTLWVGISRGDFAPMP
Ga0335079_105405691	3300032783	Soil	MSEKILLLVCGLLLVAAVLIPVPPRGRAVLWAVLIGLIATVWGGESLGYFALLP
Ga0335079_107487412	3300032783	Soil	PVKVVRREMSDTTLFLVTGALMLAAILIPVPPRARTALWILMLSLIVMMWIGVSVQGYGPFN
Ga0335078_100867642	3300032805	Soil	MSDTTLFLVTGALMLAAILIPVPPRARTALWILMLSLIVMMWIGVSVQGYGPFN
Ga0335078_101156385	3300032805	Soil	MDDTTLFLATGALMLAAVLIPLPPPGRTVLWVVMLSLIVLMWIGVSIGGYGPFGE
Ga0335078_106865652	3300032805	Soil	VGPTATMSETSLFLVTGCLLLAAVLIPVPPRLRTALWIVMLGLIVVLWAGVSLGDFVPLP
Ga0335074_100458942	3300032895	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRMLLWVVMLGLIVTLWAGVSLGDFAPLP
Ga0335074_100919663	3300032895	Soil	MSETTLFLVTGCLLLAAVLIPVPPRLRTALWIVMLGLIVVIWVGASFGDFAPLK
Ga0335074_104344532	3300032895	Soil	LILVASMSETTLFLVTGCLLLAAVLIPVPPRGRMILWVVMLGLIVTLWAGVSLGDFSPLP
Ga0335074_116274032	3300032895	Soil	MTEITLFLTTGALMLAAILIPVPPSGRIILWVVMLSLIVLMWIGASVAGYGPLASG
Ga0335075_100502248	3300032896	Soil	MSETTLFLVTGCLLLAAVLIPVPPRLRTALWIVMLGLIVVIWVGASLGDFAPLK
Ga0335072_117350012	3300032898	Soil	MSETTLFLVTGCLLLAAVLIPVPPRLRTALWIVMLGLIVVLWAGVSLGDFSPLP
Ga0335076_104798032	3300032955	Soil	MTETTLFLVTGCLLLAAVLIPVPPRGRTVLWVVMLGLIVLLWVGISLGDFAPMP
Ga0335076_115504362	3300032955	Soil	MSETTLFLVTGCLLLAAVLIPVPPRGRTILWVVMLGLIVTLWTGVTLGDIAPLQ
Ga0335073_101592282	3300033134	Soil	MSETSLFLVTGCLLLAAVLIPVPPRLRTALWIVMIGLIVVLWAGVSLGDFVPLP
Ga0335073_104021292	3300033134	Soil	MSETTLFLVSGCLLLAAVLIPVPPKLRTALWVVMLGLIVTLWAGVSLGDFAPLP
Ga0335073_116403992	3300033134	Soil	MSETTLFLVTGCLLLAAVLIPVPPRLRTALWIVMLGLIVVLWAGVSLGDFAPLP
Ga0335077_120040761	3300033158	Soil	MKETSLFLVSGCLLLAAMLIPVPPRGRTVLWVVMLGLIVTLWVGISLGDFPPLQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092404

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences