Metagenome / Metatranscriptome Family F092425

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092425
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	81 residues
Representative Sequence	MSRLYFCLRLVAVAVAFPAILLYILAATLVRSIREFRSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Number of Associated Samples	84
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.64 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	71.96 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.224 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (18.692 % of family members)
Environment Ontology (ENVO)	Unclassified (48.598 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.598 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.18% β-sheet: 0.00% Coil/Unstructured: 31.82%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01066	CDP-OH_P_transf	24.30
PF00208	ELFV_dehydrog	18.69
PF01871	AMMECR1	7.48
PF02812	ELFV_dehydrog_N	4.67
PF02604	PhdYeFM_antitox	2.80
PF01487	DHquinase_I	1.87
PF01850	PIN	1.87
PF08501	Shikimate_dh_N	1.87
PF04075	F420H2_quin_red	0.93
PF13286	HD_assoc	0.93
PF01243	Putative_PNPOx	0.93
PF03544	TonB_C	0.93
PF00117	GATase	0.93
PF02954	HTH_8	0.93
PF01936	NYN	0.93
PF13391	HNH_2	0.93
PF00593	TonB_dep_Rec	0.93
PF02518	HATPase_c	0.93
PF08241	Methyltransf_11	0.93
PF13340	DUF4096	0.93
PF12698	ABC2_membrane_3	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	24.30
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	24.30
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	24.30
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	23.36
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	18.69
COG2078	Predicted RNA modification protein, AMMECR1 domain	General function prediction only [R]	7.48
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	2.80
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	2.80
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	1.87
COG0710	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	1.87
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.22 %
Unclassified	root	N/A	31.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.22 %
Unclassified	root	N/A	31.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.22 %
Unclassified	root	N/A	31.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.06 %
Unclassified	root	N/A	31.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	28.97 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	28.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	28.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	15.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
Pseudovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	14.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
unclassified Pseudovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → unclassified Pseudovibrio	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	14.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.15 %
Pseudovibrio sp. JE062	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → unclassified Pseudovibrio → Pseudovibrio sp. JE062	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001394\|JGI20191J14862_1006555	All Organisms → cellular organisms → Bacteria	2781	Open in IMG/M
3300002162\|JGI24139J26690_1049119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300003369\|JGI24140J50213_10020704	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300004091\|Ga0062387_101358799	Not Available	564	Open in IMG/M
3300004092\|Ga0062389_101068209	Not Available	993	Open in IMG/M
3300004152\|Ga0062386_100527627	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	960	Open in IMG/M
3300005524\|Ga0070737_10005465	All Organisms → cellular organisms → Bacteria	12117	Open in IMG/M
3300005938\|Ga0066795_10209611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → unclassified Pseudovibrio → Pseudovibrio sp. JE062	579	Open in IMG/M
3300006176\|Ga0070765_100421599	Not Available	1248	Open in IMG/M
3300006642\|Ga0075521_10152980	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300006642\|Ga0075521_10433065	Not Available	641	Open in IMG/M
3300006795\|Ga0075520_1085020	Not Available	1457	Open in IMG/M
3300006795\|Ga0075520_1224598	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300009029\|Ga0066793_10022065	All Organisms → cellular organisms → Bacteria	3478	Open in IMG/M
3300009029\|Ga0066793_10400268	Not Available	788	Open in IMG/M
3300009519\|Ga0116108_1213405	Not Available	565	Open in IMG/M
3300009523\|Ga0116221_1474437	Not Available	547	Open in IMG/M
3300009623\|Ga0116133_1005257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3272	Open in IMG/M
3300009624\|Ga0116105_1242646	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300009638\|Ga0116113_1032046	Not Available	1185	Open in IMG/M
3300009645\|Ga0116106_1173962	Not Available	686	Open in IMG/M
3300010048\|Ga0126373_11022995	Not Available	892	Open in IMG/M
3300010341\|Ga0074045_10106015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1940	Open in IMG/M
3300010341\|Ga0074045_10497971	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300010361\|Ga0126378_11646832	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300010361\|Ga0126378_12498997	Not Available	590	Open in IMG/M
3300010376\|Ga0126381_100111728	All Organisms → cellular organisms → Bacteria	3516	Open in IMG/M
3300010376\|Ga0126381_103962457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300014155\|Ga0181524_10327735	Not Available	688	Open in IMG/M
3300014156\|Ga0181518_10023098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4218	Open in IMG/M
3300014156\|Ga0181518_10053779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2405	Open in IMG/M
3300014162\|Ga0181538_10015514	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5566	Open in IMG/M
3300014164\|Ga0181532_10006252	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9930	Open in IMG/M
3300014164\|Ga0181532_10573953	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300014165\|Ga0181523_10471901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300014167\|Ga0181528_10065370	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2000	Open in IMG/M
3300014200\|Ga0181526_10008088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7469	Open in IMG/M
3300014492\|Ga0182013_10001121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	37062	Open in IMG/M
3300014492\|Ga0182013_10180592	Not Available	1293	Open in IMG/M
3300014493\|Ga0182016_10055325	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3053	Open in IMG/M
3300014495\|Ga0182015_10283098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1087	Open in IMG/M
3300014654\|Ga0181525_10763072	Not Available	545	Open in IMG/M
3300014838\|Ga0182030_10017098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	14029	Open in IMG/M
3300015206\|Ga0167644_1127007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300016702\|Ga0181511_1100491	Not Available	1429	Open in IMG/M
3300016702\|Ga0181511_1321206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2968	Open in IMG/M
3300016730\|Ga0181515_1172037	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1710	Open in IMG/M
3300016750\|Ga0181505_10091362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1325	Open in IMG/M
3300017933\|Ga0187801_10335682	Not Available	620	Open in IMG/M
3300017934\|Ga0187803_10237538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300017948\|Ga0187847_10018257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4387	Open in IMG/M
3300017970\|Ga0187783_10595648	Not Available	800	Open in IMG/M
3300017972\|Ga0187781_11088339	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300017975\|Ga0187782_10202053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1487	Open in IMG/M
3300018030\|Ga0187869_10027397	All Organisms → cellular organisms → Bacteria	3178	Open in IMG/M
3300018033\|Ga0187867_10119265	Not Available	1528	Open in IMG/M
3300018035\|Ga0187875_10758361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300018040\|Ga0187862_10608354	Not Available	646	Open in IMG/M
3300018043\|Ga0187887_10524411	Not Available	699	Open in IMG/M
3300021406\|Ga0210386_10648605	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300021407\|Ga0210383_10351606	Not Available	1270	Open in IMG/M
3300021477\|Ga0210398_10010665	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8160	Open in IMG/M
3300021560\|Ga0126371_11717031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300024295\|Ga0224556_1013503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2108	Open in IMG/M
3300025412\|Ga0208194_1009231	Not Available	1663	Open in IMG/M
3300025475\|Ga0208478_1066080	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300025481\|Ga0208079_1005405	All Organisms → cellular organisms → Bacteria	5382	Open in IMG/M
3300025481\|Ga0208079_1063042	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300025482\|Ga0208715_1063779	Not Available	662	Open in IMG/M
3300025484\|Ga0208587_1072236	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300025527\|Ga0208714_1032470	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300025553\|Ga0208080_1007952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4340	Open in IMG/M
3300025579\|Ga0207927_1011855	All Organisms → cellular organisms → Bacteria	2910	Open in IMG/M
3300025581\|Ga0208355_1020504	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300025604\|Ga0207930_1006667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3567	Open in IMG/M
3300027905\|Ga0209415_10049259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5461	Open in IMG/M
3300027968\|Ga0209061_1055551	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1603	Open in IMG/M
3300028800\|Ga0265338_10058195	Not Available	3413	Open in IMG/M
3300028873\|Ga0302197_10342826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300030520\|Ga0311372_10545002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1682	Open in IMG/M
3300030618\|Ga0311354_11732379	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031057\|Ga0170834_109215398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300031708\|Ga0310686_103651298	Not Available	563	Open in IMG/M
3300031708\|Ga0310686_111440423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1540	Open in IMG/M
3300032043\|Ga0318556_10715062	Not Available	521	Open in IMG/M
3300032770\|Ga0335085_12318298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300032783\|Ga0335079_10591943	Not Available	1171	Open in IMG/M
3300032783\|Ga0335079_10820745	Not Available	962	Open in IMG/M
3300032783\|Ga0335079_11379896	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300032783\|Ga0335079_11635303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300032805\|Ga0335078_10202168	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2757	Open in IMG/M
3300032805\|Ga0335078_10426358	Not Available	1731	Open in IMG/M
3300032805\|Ga0335078_10627419	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300032805\|Ga0335078_10707733	Not Available	1246	Open in IMG/M
3300032805\|Ga0335078_11756573	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300032805\|Ga0335078_12505870	Not Available	532	Open in IMG/M
3300032892\|Ga0335081_11284936	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300032892\|Ga0335081_11702624	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300032892\|Ga0335081_12081814	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300032895\|Ga0335074_10014198	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11177	Open in IMG/M
3300032898\|Ga0335072_10132006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3110	Open in IMG/M
3300032898\|Ga0335072_10916246	Not Available	818	Open in IMG/M
3300032955\|Ga0335076_10742861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300033134\|Ga0335073_10400279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1606	Open in IMG/M
3300033158\|Ga0335077_10627082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1118	Open in IMG/M
3300033402\|Ga0326728_10000018	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	689602	Open in IMG/M
3300034163\|Ga0370515_0417958	Not Available	566	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.09%
Aquatic	Environmental → Aquatic	28.97%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.42%
Freshwater	Environmental → Aquatic → Freshwater	28.97%
Peat	Environmental → Terrestrial → Peat	4.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	31.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	28.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.67%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	24.30%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	15.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.15%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	18.69%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	15.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	9.35%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.87%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.87%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300002162	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-21A	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025475	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025484	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20191J14862_10065552	3300001394	Arctic Peat Soil	LGHNIAQAVRPVGSASCGVIMQSLYSCLRLLAVAVAFPVILTYIVVMITMHPIATVRSGFHTPLRAWMGVLDWAKGIPVGYSYWEQYQAPSMLDEXAVHHDE*
JGI24139J26690_10491191	3300002162	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIXVHHDE*
JGI24140J50213_100207042	3300003369	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIVVHHDE*
Ga0062387_1013587992	3300004091	Bog Forest Soil	MLHLLFFLRLFAVAVAFPAIVLYMVMATLVRFVVQDRRGLRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0062389_1010682092	3300004092	Bog Forest Soil	MSRLHFCLRLLAIAMAFPAILLYILAATLLRSSRGVHSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPVMLDEIVVHHDE*
Ga0062386_1005276272	3300004152	Bog Forest Soil	MLHLLFFLRLFAVAVAFPAILLYMVMATLVRFVVQDRRGLRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0070737_100054654	3300005524	Surface Soil	MSQLYFYLRLLVLAVASPAILFYMLVTTAVRCRKSFRSGLRTPLRVWMGALDWAKGIPVGYSYWEQYEAPSMLDEIEVHHDE*
Ga0066795_102096111	3300005938	Soil	MQRLYSCLRWLAVAVTFPVIMTCIVVVIAMHPIATFRNGLHPPLRVWMGVMDWAKGIPVGYSYWERYQAPSMLDEIAVHHDE*
Ga0070765_1004215992	3300006176	Soil	MPRLYFCLRLLAVAVAFPGILLYILFATLAHPVAALRYRMRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPSMLDEIVVHHDD*
Ga0075521_101529803	3300006642	Arctic Peat Soil	VAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAP
Ga0075521_104330651	3300006642	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILTYIVVMIAIHPIATVRNGFHTPLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE*
Ga0075520_10850204	3300006795	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEI
Ga0075520_12245982	3300006795	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILIYLVVMITIHPIATVRNGIHSFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE*
Ga0066793_100220655	3300009029	Prmafrost Soil	MQRLYSCLRWLAVAVTFPVIMTCIVVVIAMHPIATFRNGLHPPLRVWMGVMDWAKGIPVGYSY
Ga0066793_104002682	3300009029	Prmafrost Soil	MQRLYSCLRWLAIAVAFPVILTYIVVVIAIHPIATVRNRLHAPLRVWMGVMDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE*
Ga0116108_12134052	3300009519	Peatland	MPRLHFCLRLLAVAVAFPAILLYIFVATLVRCARGFRNGLRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0116221_14744372	3300009523	Peatlands Soil	MSRLHFCLRLLAVAVAFPAILVYILAATLVRSITERRSGLRTPLRVWMGVLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE*
Ga0116133_10052571	3300009623	Peatland	MSRLHFCLRLLAVAVAFPAILLYILAATLVRSIRDFRNGLRTPLRVWMGLLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE*
Ga0116105_12426462	3300009624	Peatland	FPAILLYILVATLVRSGRGVHSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0116113_10320463	3300009638	Peatland	MSRLHFCLRLLAIAVAFPAILLYILVATLVRSGRGVHSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0116106_11739622	3300009645	Peatland	MPRLHFCLRLLAVAVAFPAILLYIFVATLVRCARGFRNGLRTPLRIWMGVLDWAKGIPVGYSYWSTTRLPLCWT
Ga0126373_110229951	3300010048	Tropical Forest Soil	MPHFFFLLRLFAVAVAFPAIALYMIMATLVRCVLQPRGGMRTPLRVWMGVLDWAKGVPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0074045_101060152	3300010341	Bog Forest Soil	MLAVAVAFPAMLAYIVLAALLHPRALLQKGFGTPRRIWMGVLDWVKGIPVGYSYWEQFQAPMMLDEIAVHHDD*
Ga0074045_104979711	3300010341	Bog Forest Soil	MRRLFFCLRLLAVAVAFPAILAYIVLAALLHPRALLQKGFGTPRRIWMGVWDWIKGLPVGYSYWEQFQAPTMLDEIAVHHDD*
Ga0126378_116468321	3300010361	Tropical Forest Soil	MSRLYFCLRLLAIAVAFPVILLYIVVATVGRSLTGLRHGLRTPLRVWMGVLDWGKGIPVGYSYWEQYEAPIMLDEIAVHHDE*
Ga0126378_124989971	3300010361	Tropical Forest Soil	PPENRDTMPHFFFLLRLFAVAVAFPAIALYMIMATLVRCVLQPRGGMRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0126381_1001117286	3300010376	Tropical Forest Soil	MPHFFFLLRLFAVAVAFPAIALYMIMATLVRCVLQPRGGMRTPLRVWMGVLDWAKGVPVGYSYWEQYEAPSMLDEIVVHHDE*
Ga0126381_1039624572	3300010376	Tropical Forest Soil	ITVAFPVIVLYMIVATATHPVAAFRGRFRTPLRIWMGVLDWARGIPVGYSYWEQYEAPSMLDEIVVHHDD*
Ga0181524_103277352	3300014155	Bog	MSRLHFCLRLLAVAVAFPAILLYILAATLVRSITEFRSGLRTPLRVWMGVLDWTRGIPVGYSYWEHY
Ga0181518_100230984	3300014156	Bog	MPRLLFCLRLLAVAVAFPAILLYILAATLKHSITGFRNGLRTPLRIWMGVLDWAKGIPVGYSYWEHYEAPVMLDEIVVHHDE*
Ga0181518_100537792	3300014156	Bog	MSRLHFCLRLLAVAVAFPAILLYILAATLVRSITEFRSGLRTPLRVWMGVLDWTRGIPVGYSYWEHYEAPVMLDEIVVHHDE*
Ga0181538_100155144	3300014162	Bog	MPRLLFCLRLLAVAVAFPAILLYILAATLKHSITGFRNGLRTPLRIWMGVLDWAKGIPVGYSYWEHYEAPIMLDEIVVHHDE*
Ga0181532_100062522	3300014164	Bog	MSRLHFCLRLLAIAVAFPAILVYIMAVTLVRSITEFPSGLRTPLRVWMGLLDWAKGIPVGYSYWEHYEAPIMLDEIVVHHDE*
Ga0181532_105739531	3300014164	Bog	MPRLYFCLRLLAVAVAFPAILLYILLATAAHPVAALRYRFRTPLRIWMGILDWAKGIPVGYSYWEQYEAPTMLDEIVVHHDD*
Ga0181523_104719012	3300014165	Bog	MAIAAAFPAILLYMLAVTLVRCIANFRSGLRTPLRVWLGITDWARGIPVGYSYWEQYEAPIMLDEIAVHHDE*
Ga0181528_100653703	3300014167	Bog	MSRLHFCLRLLAVAVAFPAILLYILAATLLRSIKGFRIGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0181526_100080881	3300014200	Bog	PAIALYIVMATLVRCVFQDRRGLRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0182013_1000112116	3300014492	Bog	MPRLYFCLRLLAVAVAFPAILVYILLATLAHPVAAVRYQFRTPLRIWMGALDWVRGIPVGYSYWEQYEAPSMLDEIVVHHDD*
Ga0182013_101805922	3300014492	Bog	MSRVYFCLRLLALAVGFPAILLYILGATLARSITQFRSGLRTPLRVWMGVLDWAKGIPVGYSYWEHYEAPIMLDEIVVHHYE*
Ga0182016_100553253	3300014493	Bog	MSRLHFCLRLLAIAVAFPAILLYILAATLLRSIKGFRIGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0182015_102830982	3300014495	Palsa	MPRLYFCLRLLAVAVAFPAILLYILLATAAHPVAAFRYRFRTPLRIWMGALDWAKGIPVGYSYWEQYEAPTMLDEIVVHHDD*
Ga0181525_107630722	3300014654	Bog	LAVAVAFPAILLYILAATLLRSIKGFRIGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0182030_1001709813	3300014838	Bog	MSRVYFCLRLLALAVGFPAILLYILGATLARSITQFRSGLRTPLRVWMGVLDWAKGIPVGYSYWEHYEAAIMLDEIVVHHDE*
Ga0167644_11270071	3300015206	Glacier Forefield Soil	MPRFYFCLRLLAVALAFPAILLYMFGATVVQSLNRIGVGMRTPLRIWMSVLDWVKGIPVGYSYWEQYEAPIMLDEIVVHHDE*
Ga0181511_11004912	3300016702	Peatland	MPHLIFFLRLFAVTVAFPAIALYIVMATLVRCVFQDRRGLRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0181511_13212064	3300016702	Peatland	MSRLHFCLRLLAVAVAFPAILLYILAATLVRSITEFRSGLRTPLRVWMGVLDWTRGIPVGYSYWEHYEAPVMLDEIVVHHDE
Ga0181515_11720372	3300016730	Peatland	MPRLLFCLRLLAVAVAFPAILLYILAATLKHSITGFRNGLRTPLRIWMGVLDWAKGIPVGYSYWEHYEAPVMLDEIVVHHDE
Ga0181505_100913621	3300016750	Peatland	PPCGSKMPRLYFCLRVMAIAAAFPAILLYMLAVTLVRCIANFRSGLRTPLRVWLGITDWARGIPVGYSYWEQYEAPIMLDEIAVHHDE
Ga0187801_103356821	3300017933	Freshwater Sediment	PQAVLPVGNSSFRVLMQSVYFCLRLLAVAVAFPVILTYIVMVIAIHPIASVRSGFHPPLRVWMGVLDWAKGIPVGYSYWEHYQAPSMLDEIAVHHDD
Ga0187803_102375382	3300017934	Freshwater Sediment	MQSLYFCLRSVAVAVAFPVILTYIVVVIAIHPIATFRSGFHPPLRVWMGVMDWAKGIPVGYSYWEQYQAPSMLDEIAVHDE
Ga0187847_100182572	3300017948	Peatland	MSRLHFCLRLLAIAVAFPAILLYILVATLVRSGRGVHSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0187783_105956481	3300017970	Tropical Peatland	MSRLYFCLRLVAVAVAFPAILLYILAVTLVRSIRAFRSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0187781_110883391	3300017972	Tropical Peatland	MSRLYFCLRLVAVAVAFPAILLYILAATLVRSIREFRSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0187782_102020533	3300017975	Tropical Peatland	MSRLYFCLRLVAVAVAFPAILLYILAVTLVRSIRAFRSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIAVHHDE
Ga0187869_100273972	3300018030	Peatland	MPRLHFCLRLLAVAVAFPAILLYIFVATLVRCARGFRNGLRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0187867_101192651	3300018033	Peatland	MSRLHFCLRLLAVAVAFPAILLYILAATLVRSIRDFRNGLRTPLRVWMGLLDWARGIPVGYSYWEHYEAP
Ga0187875_107583612	3300018035	Peatland	FPAILLYILVATLVRSGRGVHSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0187862_106083541	3300018040	Peatland	MSRLHFCLRLLAIAVAFPAILVYIMAVTLVRSITEFPSGLRTPLRVWMGLLDWAKGIPVGYSYWEHYEAPIMLDEIVVHHDE
Ga0187887_105244111	3300018043	Peatland	NASRTGSFMSRLHFCLRLLAVAVAFPAILLYILAATLVRSIRDFRNGLRTPLRVWMGLLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE
Ga0210386_106486052	3300021406	Soil	MPRFYFCLRLLAVALAFPAILLYMLGATVVQSLNRIGIGLRTPLRIWMSVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0210383_103516062	3300021407	Soil	MSRLYFCLRLLAVAVAFPAILLYILVVTLTRSITGLRSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0210398_100106654	3300021477	Soil	MPRLYFCLRLLAVAVAFPAILMYILLATLAHPVAAVRFGFRTPLRVFMGALDWAKGIPVGYSYWEQYEAPSMLDEIAVHHDD
Ga0126371_117170312	3300021560	Tropical Forest Soil	VAVAFPAITLYMIMATLVRCVLQPRGGMRTPLRVWMGVLDWAKGVPVGYSYWEQYEAPSMLDEIVVHHDE
Ga0224556_10135032	3300024295	Soil	MSRLHFCLRLLAIAVAFPAILLYILAATLLRSIKGFRIGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0208194_10092312	3300025412	Peatland	MSRLHFCLRLLAVAVAFPAILLYILAATLVRSIRDFRNGLRTPLRVWMGLLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE
Ga0208478_10660801	3300025475	Arctic Peat Soil	VAVAFPVILIYLVVMITIHPIATVRNGVHSFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0208079_10054055	3300025481	Arctic Peat Soil	LGHNIAQAVRPVGSASCGVIMQSLYSCLRLLAVAVAFPVILTYIVVMITMHPIATVRSGFHTPLRAWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0208079_10630421	3300025481	Arctic Peat Soil	MRSLYFCLRLLAVAVAFPVILTYIVVVVAIHPIATFRNGFHPPLRVWMGVMDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0208715_10637791	3300025482	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIVVHHDE
Ga0208587_10722362	3300025484	Arctic Peat Soil	MRSLYFCLRLLAVAVAFPVILTYIVVVVAIHPIATFRNGFHPPLRVWMGVMDWAKGIPVGYSYWEQYQAPSMLDEIAVHDE
Ga0208714_10324702	3300025527	Arctic Peat Soil	MQSLYFCLRLLAVAVAFPVILIYLVVMITIHPIATVRNGVHSFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0208080_10079522	3300025553	Arctic Peat Soil	VRPVGSASCGVIMQSLYSCLRLLAVAVAFPVILTYIVVMITMHPIATVRSGFHTPLRAWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0207927_10118554	3300025579	Arctic Peat Soil	VAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0208355_10205043	3300025581	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILTYIVVMITMHPIATVRSGFHTPLRAWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0207930_10066674	3300025604	Arctic Peat Soil	MQSLYSCLRLLAVAVAFPVILSYIVVVVAIHPITTVRNGVHTFLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0209415_100492592	3300027905	Peatlands Soil	MSRLHFCLRLLAVAVAFPAILVYILAATLVRSITERRSGLRTPLRVWMGVLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE
Ga0209061_10555512	3300027968	Surface Soil	MSQLYFYLRLLVLAVASPAILFYMLVTTAVRCRKSFRSGLRTPLRVWMGALDWAKGIPVGYSYWEQYEAPSMLDEIEVHHDE
Ga0265338_100581952	3300028800	Rhizosphere	MPHFFFLLRLFAVAVAFPAIVLYMVMATLVRCVLQARGGLRTPLRVWMGVLDWAKGVPVGYSYWEQYEAPTMLDEIVVHHDE
Ga0302197_103428261	3300028873	Bog	RLYFCLRLLAVAVAFPAILVYILLATLAHPVAAVRYQFRTPLRIWMGALDWVRGIPVGYSYWEQYEAPSMLDEIVVHHDD
Ga0311372_105450023	3300030520	Palsa	LLAIAVAFPAILLYILVATLVRSGRGVHSGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0311354_117323792	3300030618	Palsa	MSRLHFCLRLLAVAVVFPAILLYIMAATLVRSIRDFRSGLRTPLRVWMGVLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE
Ga0170834_1092153982	3300031057	Forest Soil	VPRFYLCLRLLAVALAFPAILLYMFGATVVQSLNRIGVGLRTPLRIWMSVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0310686_1036512981	3300031708	Soil	MQSLYFCLRLLAVAVAFPVILMYIVAVIAIHPIASLRSGFRPALRVWMGVLDWAKGVPVGYSYWEQYQAQSMLDEIAVHHDE
Ga0310686_1114404232	3300031708	Soil	MPRLYFCLRLLAVAVAFPVILLYILLATLAHPVAAVRFGFRTPLRIFMGALDWAKGIPVGYSYWEQYEAPSMLDEIAVHHDD
Ga0318556_107150621	3300032043	Soil	MQSLYFCLRLLAVAVAFPVILAYVVLLVVIHPIMTVRESFRGPLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIAVHHDE
Ga0335085_123182982	3300032770	Soil	VLPVGNASCRVMMQSLYFCLRLLAVAVAFPVILMYIVVVMAIHPVDSFRNGFRPPLRVWMGVLDWAKGIPVGYSYWEQYQAPSMLDEIVVHHDE
Ga0335079_105919431	3300032783	Soil	MPRLYLYLRIVAVVIGFPVILIYIAVATVVRSLSSLRSGLRTPLRIWMSIVDWVKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335079_108207451	3300032783	Soil	MPHLYFFLRLFAVAVAFPAIVLYMVMATLVRCVLQARGGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPTMLDEIVVHH
Ga0335079_113798961	3300032783	Soil	MPHLFFLLRLFAVAVAFPAIVLYMVMATLVRCVLQTRNGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335079_116353032	3300032783	Soil	LVAVAVAFPAILLYMVAATAARSLVAFRSGLRTPLRVWMGVMDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335078_102021682	3300032805	Soil	MPRLYFCLRLFAIAVAFPAILLYIVAATAMRSISGLRSGLRTPLRVWMGLLDWARGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335078_104263583	3300032805	Soil	MPRLYFSLRLLAVVVAFPAILLYILAATLVRCITAFRSGLRTPLRVWMGVLDWARGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335078_106274191	3300032805	Soil	FGSLPPKNRDTMPHLLFFLRLFAVAVAFPAILLYIVMATLVRFVVSDRHGLRTPLRIWMGVLDWAKGVPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335078_107077331	3300032805	Soil	MPHLYFFLRLFAVAVAFPAIVLYMVMATLVRCVLQARGGLRTPLRVWMGVLDWAKGIPVGYSYWEQYEAPTMLDEIVVHHDE
Ga0335078_117565732	3300032805	Soil	MPRLYFVLRLLAIAVAFPFLVLYMIVVAMAHPVASFRGRLRIPLRIWMSVLDWARGIPVGYSYWEQYEAPSMLDE
Ga0335078_125058701	3300032805	Soil	SKRWWECLPNRSSMPRLYFCLRLVAIALAFPAILIYMLAATAIRSTSGLRTGLRTPLRVWMGVLDWARGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335081_112849362	3300032892	Soil	MPRLYFCLRLVAVAVAFPAILLYMVAATAARSLVAFRSLRTPLRVWMGVMDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335081_117026242	3300032892	Soil	MPHLLFFLRLFAVAVAFPAILLYIVMATLVRFVVSDRHGLRTPLRIWMGVLDWAKGVPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335081_120818142	3300032892	Soil	MPRLYFCLRLVAIALAFPAILIYMLAATAIRSTSGLRTGLRTPLRVWMGVLDWARGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335074_1001419810	3300032895	Soil	MPHLLFFLRLFAIAVAFPAILLYIVMATLVRFVVQDRRGHRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335072_101320062	3300032898	Soil	MPRLYFCLRLLAVAMAFPAILLYILVATLAHPVAAFHLDFRTALRIWMGVVDWVKGIPVGYSYWEQYEAPSMLDEIVVHHDD
Ga0335072_109162462	3300032898	Soil	MPHLYFFLRLFAIAVAFPAILLYMVMATLLRLVFQDGRGRRTPLRIWMNVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0335076_107428611	3300032955	Soil	MPRLYFCLRLVAIAVAFPAILIYMLAATAIRSTSGLRTGLRTPLRVWMSVLDWARGIPVGYSYWEQYEAPTMLDEIVVHHDE
Ga0335073_104002792	3300033134	Soil	MAFPAILLYILVATLAHPVAAFHLDFRTALRIWMGVVDWVKGIPVGYSYWEQYEAPSMLDEIVVHHDD
Ga0335077_106270822	3300033158	Soil	MPRLYFCLRLVAIALAFPAILIYMLAATAIRSTSGLRTGLRTPLRVWMGVLDWARGIPVGYSYWEQYEAPVMLDEIEVHHDD
Ga0326728_10000018335	3300033402	Peat Soil	MPHLIFFLRLFAVAVAFPAIALYMVMATLVRFVFQDRHGWRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0370515_0417958_95_343	3300034163	Untreated Peat Soil	MSRLHFCLRLLAIAVAFPAILLYIMAATLVRSITDIRSGLRTPLRVWMGVLDWARGIPVGYSYWEHYEAPVMLDEIVVHHDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092425

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences