Metagenome / Metatranscriptome Family F092463

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092463
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	62 residues
Representative Sequence	MNEPAKVFEDRITPGDWRVEWFDDDGGCEVAIFSGPNARERAIRYADRQYGRFEEVSLSPYP
Number of Associated Samples	78
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.21 %
% of genes near scaffold ends (potentially truncated)	27.10 %
% of genes from short scaffolds (< 2000 bps)	91.59 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (35.514 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.402 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.44% β-sheet: 22.22% Coil/Unstructured: 63.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.58.29.0: automated matches	d2wz1a_	2wz1	0.61772
b.55.1.5: Third domain of FERM	d2al6a2	2al6	0.61048
c.55.1.0: automated matches	d6ksra1	6ksr	0.60569
b.55.1.0: automated matches	d5umsa_	5ums	0.60306
c.55.1.1: Actin/HSP70	d3i33a2	3i33	0.59889

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00805	Pentapeptide	2.80
PF14659	Phage_int_SAM_3	1.87
PF13662	Toprim_4	1.87
PF06627	DUF1153	1.87
PF13358	DDE_3	1.87
PF13727	CoA_binding_3	0.93
PF01381	HTH_3	0.93
PF13430	DUF4112	0.93
PF11775	CobT_C	0.93
PF04392	ABC_sub_bind	0.93
PF03928	HbpS-like	0.93
PF11994	DUF3489	0.93
PF01724	DUF29	0.93
PF04828	GFA	0.93
PF02735	Ku	0.93
PF01936	NYN	0.93
PF13148	DUF3987	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	2.80
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.93
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.31 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.31 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.31 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.70 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.70 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	70.09 %
Unclassified	root	N/A	18.69 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	70.09 %
Unclassified	root	N/A	18.69 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	70.09 %
Unclassified	root	N/A	18.69 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	70.09 %
Unclassified	root	N/A	18.69 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	0.93 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10598795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300001661\|JGI12053J15887_10189503	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005434\|Ga0070709_10284649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1202	Open in IMG/M
3300005436\|Ga0070713_102441612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300005437\|Ga0070710_10028309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2996	Open in IMG/M
3300005437\|Ga0070710_10907971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300005445\|Ga0070708_102129126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300005454\|Ga0066687_10330947	Not Available	869	Open in IMG/M
3300005467\|Ga0070706_100301314	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300005468\|Ga0070707_100067339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3444	Open in IMG/M
3300005536\|Ga0070697_100521289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1040	Open in IMG/M
3300006028\|Ga0070717_10258644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1540	Open in IMG/M
3300006032\|Ga0066696_10885681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300006175\|Ga0070712_101453382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	599	Open in IMG/M
3300006176\|Ga0070765_101306877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300007788\|Ga0099795_10035334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1747	Open in IMG/M
3300007788\|Ga0099795_10081834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1237	Open in IMG/M
3300007788\|Ga0099795_10428479	Not Available	605	Open in IMG/M
3300009143\|Ga0099792_10003497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6121	Open in IMG/M
3300009143\|Ga0099792_10339882	Not Available	903	Open in IMG/M
3300009143\|Ga0099792_11116420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300010048\|Ga0126373_13077691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300010358\|Ga0126370_12147101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300010361\|Ga0126378_10985186	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300010361\|Ga0126378_11626727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300010361\|Ga0126378_12389077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300010361\|Ga0126378_13347180	Not Available	509	Open in IMG/M
3300010376\|Ga0126381_103108477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300010376\|Ga0126381_103341375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300010376\|Ga0126381_104779882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300010398\|Ga0126383_13292486	Not Available	528	Open in IMG/M
3300012203\|Ga0137399_10616021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	913	Open in IMG/M
3300012211\|Ga0137377_10880877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	827	Open in IMG/M
3300012683\|Ga0137398_10232461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1224	Open in IMG/M
3300012917\|Ga0137395_10177061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1474	Open in IMG/M
3300012917\|Ga0137395_11212865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300012927\|Ga0137416_11445694	Not Available	623	Open in IMG/M
3300016294\|Ga0182041_11473297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300016341\|Ga0182035_11864732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300016387\|Ga0182040_10589390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300016404\|Ga0182037_10355112	Not Available	1195	Open in IMG/M
3300016422\|Ga0182039_11198160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300016422\|Ga0182039_12004236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300016422\|Ga0182039_12006804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300020199\|Ga0179592_10051498	Not Available	1872	Open in IMG/M
3300020580\|Ga0210403_10022999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4980	Open in IMG/M
3300020580\|Ga0210403_10182335	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300020583\|Ga0210401_10950796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	718	Open in IMG/M
3300020583\|Ga0210401_11289624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300021168\|Ga0210406_10866867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300021170\|Ga0210400_10298192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1323	Open in IMG/M
3300021406\|Ga0210386_10061420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	3004	Open in IMG/M
3300021406\|Ga0210386_10374658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1225	Open in IMG/M
3300021432\|Ga0210384_10124351	Not Available	2314	Open in IMG/M
3300021433\|Ga0210391_10557484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300021476\|Ga0187846_10228151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	777	Open in IMG/M
3300021476\|Ga0187846_10334454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300021479\|Ga0210410_11270594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300021559\|Ga0210409_10844679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300021560\|Ga0126371_10834122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1067	Open in IMG/M
3300022557\|Ga0212123_10056647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3520	Open in IMG/M
3300025915\|Ga0207693_10745677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300025916\|Ga0207663_10104023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1913	Open in IMG/M
3300025916\|Ga0207663_10699252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300026496\|Ga0257157_1042280	Not Available	761	Open in IMG/M
3300026557\|Ga0179587_10469859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	824	Open in IMG/M
3300027681\|Ga0208991_1137279	Not Available	725	Open in IMG/M
3300029636\|Ga0222749_10526184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300031234\|Ga0302325_10657243	Not Available	1524	Open in IMG/M
3300031236\|Ga0302324_101523496	Not Available	867	Open in IMG/M
3300031236\|Ga0302324_103027066	Not Available	558	Open in IMG/M
3300031525\|Ga0302326_13696287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300031572\|Ga0318515_10471625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300031573\|Ga0310915_11297969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300031640\|Ga0318555_10586728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300031719\|Ga0306917_10351414	Not Available	1146	Open in IMG/M
3300031719\|Ga0306917_10891859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300031736\|Ga0318501_10722555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300031744\|Ga0306918_10284548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1270	Open in IMG/M
3300031744\|Ga0306918_10373403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1109	Open in IMG/M
3300031744\|Ga0306918_10746725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300031744\|Ga0306918_11532338	Not Available	509	Open in IMG/M
3300031747\|Ga0318502_10904355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300031768\|Ga0318509_10266152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300031798\|Ga0318523_10483884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300031879\|Ga0306919_10585575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	861	Open in IMG/M
3300031879\|Ga0306919_10863273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300031890\|Ga0306925_11179022	Not Available	769	Open in IMG/M
3300031910\|Ga0306923_10971723	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300031910\|Ga0306923_12446152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300031941\|Ga0310912_11088960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300031945\|Ga0310913_10601461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	780	Open in IMG/M
3300031945\|Ga0310913_10840050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300031946\|Ga0310910_10491594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	974	Open in IMG/M
3300031947\|Ga0310909_10543356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	973	Open in IMG/M
3300031954\|Ga0306926_11883198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676	Open in IMG/M
3300031962\|Ga0307479_10240510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1786	Open in IMG/M
3300031962\|Ga0307479_10698465	Not Available	993	Open in IMG/M
3300032001\|Ga0306922_11632294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300032039\|Ga0318559_10313251	Not Available	729	Open in IMG/M
3300032076\|Ga0306924_11437271	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300032076\|Ga0306924_11744014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300032094\|Ga0318540_10607449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300032261\|Ga0306920_101233041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1079	Open in IMG/M
3300032261\|Ga0306920_103316407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300032895\|Ga0335074_10008349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14389	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.07%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.46%
Peat	Environmental → Terrestrial → Peat	3.74%
Cave	Environmental → Terrestrial → Cave	1.87%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.64%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.87%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.87%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.02%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.28%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.87%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_105987952	3300001593	Forest Soil	MPEPAIIFPDRLYSEEWRVEWVDDDGACEVAIFAGPNARERAIRYADRQYGLFEEVSFD
JGI12053J15887_101895031	3300001661	Forest Soil	EDRMYRGEWRVEWLDDRGGVEVAVFSGPNAQERALRYADRQYGYFEEIRFGP*
Ga0070709_102846491	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNARLGEKTVSETAKVFEDRQWRGDWRVEWMDDDGGCEVAIFSGPNARDRAIRYADRQYGNFEKVSLTPSP*
Ga0070713_1024416121	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPAKVFEDRLYPGDWRVEWVDDDGGVELAIFAGPNTRERALRHADRQYGRFEEVKPEP
Ga0070710_100283095	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNASPGGKAVLEPAKVFEDRESPEDWRVEWIDDDGGCEIAIFSGQNARERAIRYADRQYGNFKKVSLPPSP*
Ga0070710_109079712	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDASTKVFEDRIWPGDWRVEKLDDDGGIEVAIFSGPDARDRAFEYADRPYRGDFEEVSLPPMRAP*
Ga0070708_1021291262	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPAKVFEDRLYPGDWRVEWVDDDGGVELAIFAGPNARERALRYADRQYGRFEEVKPEP
Ga0066687_103309473	3300005454	Soil	MPEPAIIFPDRLYSEDWRVEWVDEDGGIEVAIFAGPNARERALRYADRQYGLFEEVSFDP
Ga0070706_1003013144	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DRLYPGDWRVEWVDDDGGVELAIFAGPNARERALRYADRQYGRFEEVKPEP*
Ga0070707_1000673391	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPAKVFEDRLYPGDWRVEWVDDDGGVELAIFAGPNARERALRYADRQYGRFEAVKPEP
Ga0070697_1005212892	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPAKVFEDRLYPGDWRVEWVDDDGGVELAIFAGPNTRERALRYADRQYGRFEEVKPEP
Ga0070717_102586443	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPAKVFEGREVSGQWRIEWVDDDGGVELAIFAGPDTRTRALRYAIQRYSHFVEKTRALP*
Ga0066696_108856812	3300006032	Soil	MNEPAKVFEDRVSPGNWRVEWFDHDGGCEVAIFSGPKARDRAIRYADRQYGNFDEISLPPYE*
Ga0070712_1014533821	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VLEPAKVFEDRQWRGDWRVEWMDDDGGCEVAIFSGSNARERAIGYADSQYGNFEETSLAPSP*
Ga0070765_1013068772	3300006176	Soil	VISQPDTEPAYVFEDREYREWRVQWYDDDGGCELAIFSGPRARERALRYAERQYGHFEEFGFYH*
Ga0099795_100353343	3300007788	Vadose Zone Soil	VAVAISEPAKVFEDRLYPDDWRVEWVDDDGGVELAIFAGPNARERAIKYADRQDGRFREVKLKP*
Ga0099795_100818343	3300007788	Vadose Zone Soil	MAEPARVFEDRLYPGDWRVEWVDDAGEVELAIFAGPNARERAIRYADRQYGRFLEGPYPHAR*
Ga0099795_104284792	3300007788	Vadose Zone Soil	MAESARVFEDLLYPGDWRVEWIDDAGEVEITIFAGPNAQNRALQYADRRYGPSR*
Ga0099792_100034971	3300009143	Vadose Zone Soil	MAEPARVFEDRLYPGDWRVEWVDDAGEVELAIFAGPNACERAIRYADRQYGRFLEVPYPHAR*
Ga0099792_103398823	3300009143	Vadose Zone Soil	MAGPARVFEDLLYPGDWRVEWIDDAGEVEITIFAGPNAQNRALQYADRQYGPSRQVPYPYAR*
Ga0099792_111164202	3300009143	Vadose Zone Soil	MSEPAQIFEDRVNPREWRVECFDDDGRCEVAIFAGPNARERALRYADRQYGLFEEVELDPYP*
Ga0126373_130776912	3300010048	Tropical Forest Soil	MEPAQVFEDRQLPGDWRVEWVDDDGGIEVAIFSGPNARERALTYADRQYGRFEETKLEPYP*
Ga0126370_121471012	3300010358	Tropical Forest Soil	MNEPAKVFEDRITPGDWRVEWFDDDGGCEVAIFSGPNARERAIRYADRQYGRFEEVSLSPYP*
Ga0126378_109851862	3300010361	Tropical Forest Soil	MNPAKVFEDRETSGDWRVEWVDDDDAVEVAIFSGPSARERALRYADRQYGNFQEVSLVSRI*
Ga0126378_116267271	3300010361	Tropical Forest Soil	MDLEPAKVFEDRECPGDWRVEWIDDDGGIEVAIFSGPNARERALRYSDRQYGNFEEIIL
Ga0126378_123890772	3300010361	Tropical Forest Soil	MDLEPAKVFEDREFPGDWRVEWVDDDGGIEVAIFSGPKARERALRYANRQYGNFEEISLAPYP*
Ga0126378_133471802	3300010361	Tropical Forest Soil	MELARVFEDRQFTGNWCVEWVDDDRGIEVAIFSGPNARERALAYADRQYGRFEETKLEPYP*
Ga0126381_1031084771	3300010376	Tropical Forest Soil	MEVAQVFEDRQVPGKWRVQRVDDDGAVEVAIFSGPHARDRALAYADRQYGSFEEISLAPYP*
Ga0126381_1033413751	3300010376	Tropical Forest Soil	MNEAAKVFEDRMTPAIWRVEWFDDDGGCEVAIFSGPNARDRAIRYADRQYGRFEEVSLSPYA*
Ga0126381_1047798821	3300010376	Tropical Forest Soil	MESEPAKVFEDREWPGDWRVEWVDDDGGIEVAVFSGPNARERALRYADRQYGNFQEVS
Ga0126383_132924861	3300010398	Tropical Forest Soil	METAKVFEDREWPGDRRLGWIDYDGGIEVAVFSGPNARERALRYADRQYGNFQEVSLEPYSGPWWHKSYG*
Ga0137391_106989202	3300011270	Vadose Zone Soil	MYPGEWRVEWIDDDGGIEVAIFAGPKARERAIRYADRQYENFEEVSFDPVGAP*
Ga0137399_106160211	3300012203	Vadose Zone Soil	MAEPARVFEDRLYPGDWRVEWVDDAGEVELAIFAGPNARERAIRYADRQYGRFLEVPYPHAR*
Ga0137377_108808772	3300012211	Vadose Zone Soil	AHIFEDRVNPSEWRVEWFDDDGRCEVAIFAGPTARERALRYADRQYGLFEEVQLDPYP*
Ga0137398_102324612	3300012683	Vadose Zone Soil	MAGPARDFEDLLYPGDWRVEWIDDAGEVEITIFAGPNAQNRALQYADRQYGPSRQVPYPYAR*
Ga0137395_101770612	3300012917	Vadose Zone Soil	MGRSSGMAEPAHVFEDRMYPGEWRVEWFDDDGGVEVAIFAGPRARERALPYADRQYGHFEEIRFNP*
Ga0137395_112128651	3300012917	Vadose Zone Soil	MSEPAHIFEDRVNPSEWRVEWFNDDGRCEVAIFAGPNACERALRYADRQYGLFEEVQLDPYP*
Ga0137416_114456942	3300012927	Vadose Zone Soil	MAESARVFEDLLYPGDWRVEWIDDAGEVEITIFAGPNAQNRALQYADRQYGPSRQVPYPYAR*
Ga0182041_114732971	3300016294	Soil	MTAEPAKIFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERALRYADGQYPNFEVLV
Ga0182035_118647322	3300016341	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERVLRYADRQYGNFQEVRLEPYS
Ga0182040_105893901	3300016387	Soil	MDLETAKVFEHREWPGDWRVEWVDDDGGVEVAIFSGPNAREWALRYAERQYPDFEVTSPGSVS
Ga0182037_103551123	3300016404	Soil	MKTAKAFEDREWPGDWRVEWIDDDGGIEVAFSGPNARERALRYADGQYGNFQEVSLEPYSGP
Ga0182039_111981602	3300016422	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERALRYADGQYPNFEVLV
Ga0182039_120042361	3300016422	Soil	MEMAQVFEDRQVPGEWRVERVDDDGAVEVAIFSGPHARDRALAYADRQYGSFEEISLAPY
Ga0182039_120068043	3300016422	Soil	MARCAAQVFEDRQVPGDWRVERVDDDGAVEVAIFSGPHARDRALAYADHQYGSFEEISLAPYP
Ga0179592_100514985	3300020199	Vadose Zone Soil	VAVAISEPAKVFEDRLYPDDWRVEWVDDDGGVELAIFAGPNARERAIKYADRQDGRFREVKLKP
Ga0210403_100229996	3300020580	Soil	VTAKVFEDRRVPGDWRVEWFDDDGGCEVAIFSGPNAREWALGHADRQYGNFDEISAAPYRAC
Ga0210403_101823351	3300020580	Soil	MTAKVFEDRRVPGDWRVECFDDDGGCEVAIFSGPNARERALRYADRQYGNFEEISLDPYP
Ga0210401_109507961	3300020583	Soil	VSEPAKVFEDRKWPGDWRVDWFDDDGGGEVAIFSGPNARERAMRNADRQYGSFEEVSLAH
Ga0210401_112896242	3300020583	Soil	MAETAKVFEDRQCPGDWRVEWIDNDGGCEVAIFSGPNARERAIRYAGRQYGTFEEISLSPNP
Ga0210406_108668671	3300021168	Soil	VLEPAKVFEDRQWRGDWRGEWMDDDGGCEVAIFSGSNARERAIGYADSQYGNFEETSLAPSP
Ga0210400_102981924	3300021170	Soil	MTEPAQVFEHRVTAGDWRVEWYDDDRGIEVAIFAGPNARERALRYADFQFRVFEEIELELEPYPR
Ga0210386_100614203	3300021406	Soil	MAETAKVFEDRQCPGDWRVEWIDNDGGCEVAIFSGPNARERAIRYAGRQYGTFEEISLSPYP
Ga0210386_103746582	3300021406	Soil	MAETAKVFEDRQCPGDWRVEWIDNDGGCEVAIFSGPNARERAIRYAGHQYGTFED
Ga0210384_101243512	3300021432	Soil	MNARLGEKTVSETAKVFEDRQWRGDWRVEWMDDDGGCEVAIFSGPNARDRAIRYADRQYGNFEKVSLTPSP
Ga0210391_105574842	3300021433	Soil	MEPAKVFLDRHGSGDWRIEWFDDDGGCEVAIFSGPNARDRALRHADHQYGQFEEVSLTPYAVPG
Ga0187846_102281512	3300021476	Biofilm	MPQTAKVFEDCEHPGEWRVEWFDDDGGCELRIFSGAHARAQALRYADHQYGKFEEVIPAPYP
Ga0187846_103344542	3300021476	Biofilm	MPQTAKVFEDCGHPGEWRVEWFDDDGGCEVRIFSGASAREQAIRYADHQYGKFEEVILAP
Ga0210410_112705941	3300021479	Soil	VLEPAKVFEDRQWRGDWRVEWMDDDGGCEVAIFSGSNARERAIGYADSQYGNFEETSLAPSP
Ga0210409_108446791	3300021559	Soil	VPEPAHVFEDRMYPGEWRVEWFNDDGACEVAIFAGPNTRERALRYADRQYGRFEESRLDPHPRKSG
Ga0126371_108341222	3300021560	Tropical Forest Soil	MNEPAKVFEDRITPGDWRVEWFDDDGGCEVAIFSGPNARERAILYADRQYGRFEEVSLSPYP
Ga0212123_100566472	3300022557	Iron-Sulfur Acid Spring	MTEPAYVFEDRKSPGEWHVPWIDDDDAMEVAIFSGPRSRERAIRYAERQYGSFEEVHFDP
Ga0207693_107456772	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPAKVFEGREVSGQWRIEWVDDDGGVELAIFAGPDTRTRALRYAIQRYSHFVEKTRAL
Ga0207663_101040232	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VSEPAKVFEDRKWPGDWRVDWFDDDGGCEVAIFSGPNARERAMRNADRQYGSFEEVSLAH
Ga0207663_106992522	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VLEPAKVFEDRQWRGDWRVEWMDDDGGCEVAIFSGPNARDRAIRYADRQYGNFEKVSLTPSP
Ga0257157_10422802	3300026496	Soil	MAESARVFEDLLYPGDWRVEWIDDAGEVEITIFAGPNAQNRALQYADRRYGPSR
Ga0179587_104698592	3300026557	Vadose Zone Soil	MSEPAHVFEDRMYPGEWRVEWFDDDGSCAVSIFGGPHARQRTLRYADRQYGLFEEVHFDS
Ga0208991_11372792	3300027681	Forest Soil	MAESARVFEDLLYPGDWRVEWIDDAGEVEITIFAGPNAQNRALQYADRQYGPSRQVPYPYAR
Ga0222749_105261842	3300029636	Soil	MTEAAKVFEDRVVAGDWRVEWIDDDGGIEVAIFSGPNAKERALRYADRQYGQFEEICLAPYS
Ga0302325_106572433	3300031234	Palsa	MEPAKVFPDRHGSGDWRVERFGDDGACEVAIFSGPNARDRALLYADRQYGRFEELSLTPY
Ga0302324_1015234961	3300031236	Palsa	MEPARVFLDRHGNGGEWRVEWFNSDGGCEVAIFSGPNSRDRALRYADQQYAQFEEVSLTS
Ga0302324_1030270662	3300031236	Palsa	MPEPAQLFEDRVRPEDWRVESTDDDGGIEVAIFSGPTARTRARSYAARQYGTFEEVSLLPYG
Ga0302326_136962871	3300031525	Palsa	LNMGVRQMEPAQVFPDRHANGDWRVEWFDDDGGCEVAIISGPNARDRALLYADHRYGRFEEVSLNPY
Ga0318515_104716252	3300031572	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLT
Ga0310915_112979691	3300031573	Soil	MTAEPAKIFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERALRYAERQYPDFEVTSLTPYP
Ga0318555_105867282	3300031640	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERVLRYADRQYGNFQEVSLKPSSGPKI
Ga0306917_103514141	3300031719	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERALRYAERQYPDFEVTSLTPYP
Ga0306917_108918591	3300031719	Soil	VFEDREWPGEWRVKWVDEDGGVEVAIFFGPNAREWALRYADRQYSNFEEISLSPYP
Ga0318501_107225552	3300031736	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERALRYADRQYGNFR
Ga0306918_102845483	3300031744	Soil	LEPAKVFEDREWPGEWRVKWVDEDGGVEVAIFFGPNAREWALRYADRQYSNFEEISLSPY
Ga0306918_103734032	3300031744	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0306918_107467252	3300031744	Soil	MDVETAKVFEDREWPGDWRVDWVDDDGGVEAAILSGPNARERAVRYADLSTPERNCIGG
Ga0306918_115323381	3300031744	Soil	VFEDREWPGDSRVEWVDDDGGIEVAIFSGPNARDRAIRYADRQYGKFEGISLEPYS
Ga0318502_109043552	3300031747	Soil	MTAEPAKVFEDRRCPGDWRVDWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0318509_102661522	3300031768	Soil	PENSLFESNMTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0318523_104838841	3300031798	Soil	MESEPAKVFEDREWPGDWRVEWVDDDGGVEVAIFSRPNARERALRYADRQYGNFQEVSLEPYPGP
Ga0306919_105855752	3300031879	Soil	MTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGPNARERALRYADRQYGNFREVSLERYSGP
Ga0306919_108632731	3300031879	Soil	LRDMESEPAKVFEDREWPGDWRVEWVDDDGGVEVAIFSRPNARERALRYADRQYGNFQ
Ga0306925_111790221	3300031890	Soil	VVVRSAGEGTGTGQVFEDREWPGDSRVEWVDDDGGIEVAIFSGPNARDRAIRYADRQYGKFEGISLEPYS
Ga0306923_109717231	3300031910	Soil	MKTAKAFEDREWPGDWRVEWIDDDGGIEVAFSGPNARERALRYADGQYGNFQEVSLGPYSDP
Ga0306923_124461521	3300031910	Soil	ESKMTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0310912_110889601	3300031941	Soil	AKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0310913_106014611	3300031945	Soil	GTGTGQVFEDREWPGDSRVEWVDDDGGIEVAIFSGPNARDRAIRYADRQYGKFEGISLEPYS
Ga0310913_108400501	3300031945	Soil	RTAYFESKMTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0310910_104915942	3300031946	Soil	MDLEPAKVFEDRQWPGDWRVERIDDDGGIEVVIFSGPNARERALRYADRQYGDFEEISLAPYP
Ga0310909_105433561	3300031947	Soil	MDLETAKVFEHREWPGDWRVEWVDDDGGVEVAIFSGPNARERALRYADRQYGNFQEVSLEPYSGP
Ga0306926_118831981	3300031954	Soil	METAKVFEDHEWPGDWRVERIDDDGGVEVAIFSGPYAREQALRYADRQYGNFQEVSLVSRIRNSFK
Ga0307479_102405102	3300031962	Hardwood Forest Soil	VISHPDTEPAYVFEDREYREWRVQWYDDDGGCELAIFSGPRARERALRYAERQYGHFEEFGFYH
Ga0307479_106984652	3300031962	Hardwood Forest Soil	VISQPDTEPAYVFEDREYREWRVQWYDDDGGCELAIFSGPRARERALRYAEWQYGRFEEFGFYH
Ga0306922_116322941	3300032001	Soil	RRGLDLEPAKVFEDREWPGEWRVKWVDEDGGVEVAIFFGPNAREWALRYADRQYSNFEEISLSPYP
Ga0318559_103132512	3300032039	Soil	VVRSAGEGTGTGQVFEDREWPGDSRVEWVDDDGGIEVAIFSGPNARDRAIRYADRQYGKFEGISLE
Ga0306924_114372711	3300032076	Soil	LEPAKVFEDREWPGEWRVKWVDEDGGVEVAIFSGPNARERALCYADRQYGNFEEISLAL
Ga0306924_117440142	3300032076	Soil	CAAQVFEDRQVPGDWRVERVDDDGAVEVAIFSGPHARDRALAYADHQYGSFEEISLAPYP
Ga0318540_106074492	3300032094	Soil	YFESKMTAEPAKVFEDRRCPGDWRVEWVDDDGAVEVAIFSGRNARERALRYAERRYLDFEVTSLTPYP
Ga0306920_1012330412	3300032261	Soil	MESEPAKVFEDREWPEDWRVEWIDDDGGVEVVIFSGPNARERALRYADRHYGNFQEVSLEPYPGP
Ga0306920_1033164072	3300032261	Soil	RRCPGDWRVEWVDDDGAVEVAIFSGPNARERVLRYADRQYGNFQEVRLEPYSAP
Ga0335074_1000834916	3300032895	Soil	MKAELFEDRETPGDWRVEREDDDGSIEVAIFSGPNARERAIRYADRQYGDFAEVSYPPYTRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092463

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences