Metagenome / Metatranscriptome Family F092482

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092482
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	64.15 %
% of genes near scaffold ends (potentially truncated)	49.53 %
% of genes from short scaffolds (< 2000 bps)	91.59 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.159 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.953 % of family members)
Environment Ontology (ENVO)	Unclassified (40.187 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.290 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.65% β-sheet: 11.76% Coil/Unstructured: 45.59%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01068	DNA_ligase_A_M	8.41
PF12244	DUF3606	1.87
PF00485	PRK	0.93
PF13439	Glyco_transf_4	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	8.41
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	8.41

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
All Organisms	root	All Organisms	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
cellular organisms	root	All Organisms → cellular organisms	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.43 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	10.28 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	8.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.87 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.93 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	10.28 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	4.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Roseobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter	0.93 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	10.28 %
Methyloceanibacter methanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	3.74 %
unclassified Caulobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter	0.93 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Roseobacter litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter → Roseobacter litoralis	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	10.28 %
Methyloceanibacter methanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	3.74 %
Caulobacter sp. JGI 0001010-J14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. JGI 0001010-J14	0.93 %
Bradyrhizobium sp. WSM1253	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1253	0.93 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.93 %
Roseobacter litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter → Roseobacter litoralis	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10520777	Not Available	713	Open in IMG/M
3300000955\|JGI1027J12803_100945099	Not Available	712	Open in IMG/M
3300004114\|Ga0062593_100834724	Not Available	922	Open in IMG/M
3300004157\|Ga0062590_102056377	Not Available	594	Open in IMG/M
3300004463\|Ga0063356_101969459	Not Available	883	Open in IMG/M
3300004463\|Ga0063356_102378379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	810	Open in IMG/M
3300004463\|Ga0063356_106391997	Not Available	505	Open in IMG/M
3300004479\|Ga0062595_101125382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter → Roseobacter litoralis	689	Open in IMG/M
3300004480\|Ga0062592_101988410	Not Available	574	Open in IMG/M
3300005093\|Ga0062594_100454382	Not Available	1062	Open in IMG/M
3300005093\|Ga0062594_100676009	Not Available	925	Open in IMG/M
3300005290\|Ga0065712_10501470	Not Available	649	Open in IMG/M
3300005329\|Ga0070683_101336367	Not Available	689	Open in IMG/M
3300005340\|Ga0070689_101968434	Not Available	534	Open in IMG/M
3300005341\|Ga0070691_10186441	Not Available	1083	Open in IMG/M
3300005341\|Ga0070691_11075588	Not Available	506	Open in IMG/M
3300005344\|Ga0070661_100251570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1364	Open in IMG/M
3300005366\|Ga0070659_100049284	All Organisms → cellular organisms → Bacteria	3311	Open in IMG/M
3300005367\|Ga0070667_100263973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1542	Open in IMG/M
3300005406\|Ga0070703_10571205	Not Available	518	Open in IMG/M
3300005440\|Ga0070705_101530660	Not Available	559	Open in IMG/M
3300005456\|Ga0070678_101843939	Not Available	570	Open in IMG/M
3300005457\|Ga0070662_100028375	All Organisms → cellular organisms → Bacteria → Proteobacteria	3893	Open in IMG/M
3300005548\|Ga0070665_100084781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3174	Open in IMG/M
3300005549\|Ga0070704_100859745	Not Available	814	Open in IMG/M
3300005563\|Ga0068855_101938381	Not Available	596	Open in IMG/M
3300005563\|Ga0068855_102373778	Not Available	530	Open in IMG/M
3300005618\|Ga0068864_101380304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1253	706	Open in IMG/M
3300005718\|Ga0068866_11383208	Not Available	514	Open in IMG/M
3300006046\|Ga0066652_101731607	Not Available	568	Open in IMG/M
3300006175\|Ga0070712_100676377	Not Available	878	Open in IMG/M
3300006755\|Ga0079222_10096409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1541	Open in IMG/M
3300006755\|Ga0079222_10906885	Not Available	740	Open in IMG/M
3300006846\|Ga0075430_100313113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1298	Open in IMG/M
3300006847\|Ga0075431_101075328	Not Available	770	Open in IMG/M
3300006852\|Ga0075433_11127421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. JGI 0001010-J14	682	Open in IMG/M
3300006871\|Ga0075434_101017204	Not Available	842	Open in IMG/M
3300007076\|Ga0075435_101405231	Not Available	612	Open in IMG/M
3300009094\|Ga0111539_10152615	Not Available	2703	Open in IMG/M
3300009098\|Ga0105245_10555369	Not Available	1170	Open in IMG/M
3300009100\|Ga0075418_12117547	Not Available	613	Open in IMG/M
3300009147\|Ga0114129_11595775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	799	Open in IMG/M
3300009147\|Ga0114129_11823518	Not Available	739	Open in IMG/M
3300009156\|Ga0111538_11323819	Not Available	909	Open in IMG/M
3300009177\|Ga0105248_10015224	All Organisms → cellular organisms → Bacteria → Proteobacteria	8475	Open in IMG/M
3300009551\|Ga0105238_10038867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	4832	Open in IMG/M
3300010371\|Ga0134125_10629700	Not Available	1185	Open in IMG/M
3300010371\|Ga0134125_11840647	Not Available	658	Open in IMG/M
3300010373\|Ga0134128_10639780	Not Available	1182	Open in IMG/M
3300010397\|Ga0134124_11273195	Not Available	758	Open in IMG/M
3300010399\|Ga0134127_10272029	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300011119\|Ga0105246_12011269	Not Available	558	Open in IMG/M
3300012212\|Ga0150985_115165268	Not Available	822	Open in IMG/M
3300012212\|Ga0150985_121583504	Not Available	577	Open in IMG/M
3300012882\|Ga0157304_1095058	Not Available	535	Open in IMG/M
3300012896\|Ga0157303_10012874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1295	Open in IMG/M
3300012898\|Ga0157293_10073777	Not Available	820	Open in IMG/M
3300012901\|Ga0157288_10055123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	940	Open in IMG/M
3300012905\|Ga0157296_10158021	Not Available	685	Open in IMG/M
3300012907\|Ga0157283_10303059	Not Available	555	Open in IMG/M
3300012908\|Ga0157286_10187432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	688	Open in IMG/M
3300012911\|Ga0157301_10012689	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300012913\|Ga0157298_10036644	Not Available	1050	Open in IMG/M
3300012914\|Ga0157297_10186573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	706	Open in IMG/M
3300012951\|Ga0164300_11023816	Not Available	533	Open in IMG/M
3300012960\|Ga0164301_11105077	Not Available	631	Open in IMG/M
3300013096\|Ga0157307_1043075	Not Available	823	Open in IMG/M
3300013102\|Ga0157371_10925631	Not Available	662	Open in IMG/M
3300013296\|Ga0157374_12497666	Not Available	544	Open in IMG/M
3300013297\|Ga0157378_12946426	Not Available	528	Open in IMG/M
3300013306\|Ga0163162_10533711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1302	Open in IMG/M
3300014325\|Ga0163163_10165353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2258	Open in IMG/M
3300014745\|Ga0157377_10759464	Not Available	710	Open in IMG/M
3300014745\|Ga0157377_11195116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	588	Open in IMG/M
3300014968\|Ga0157379_10461807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1173	Open in IMG/M
3300015077\|Ga0173483_10137336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1064	Open in IMG/M
3300015077\|Ga0173483_10385492	Not Available	715	Open in IMG/M
3300015372\|Ga0132256_101287746	Not Available	844	Open in IMG/M
3300015373\|Ga0132257_100808640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1170	Open in IMG/M
3300019356\|Ga0173481_10240089	Not Available	810	Open in IMG/M
3300020069\|Ga0197907_10768516	Not Available	612	Open in IMG/M
3300021078\|Ga0210381_10373804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	524	Open in IMG/M
3300023071\|Ga0247752_1058112	Not Available	616	Open in IMG/M
3300025885\|Ga0207653_10078830	Not Available	1137	Open in IMG/M
3300025900\|Ga0207710_10361569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	741	Open in IMG/M
3300025906\|Ga0207699_10828166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	681	Open in IMG/M
3300025909\|Ga0207705_11199599	Not Available	582	Open in IMG/M
3300025911\|Ga0207654_10103251	Not Available	1760	Open in IMG/M
3300025916\|Ga0207663_10880484	Not Available	715	Open in IMG/M
3300025920\|Ga0207649_10740563	Not Available	764	Open in IMG/M
3300025920\|Ga0207649_10996389	Not Available	659	Open in IMG/M
3300025927\|Ga0207687_11418687	Not Available	597	Open in IMG/M
3300025927\|Ga0207687_11607889	Not Available	558	Open in IMG/M
3300025929\|Ga0207664_11822790	Not Available	531	Open in IMG/M
3300025932\|Ga0207690_10070651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2405	Open in IMG/M
3300025933\|Ga0207706_10410063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1174	Open in IMG/M
3300025934\|Ga0207686_11048422	Not Available	663	Open in IMG/M
3300025939\|Ga0207665_10933235	Not Available	689	Open in IMG/M
3300025941\|Ga0207711_12036900	Not Available	517	Open in IMG/M
3300025960\|Ga0207651_10587711	Not Available	972	Open in IMG/M
3300025961\|Ga0207712_10816027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	821	Open in IMG/M
3300025986\|Ga0207658_11279780	Not Available	670	Open in IMG/M
3300026078\|Ga0207702_10235608	Not Available	1712	Open in IMG/M
3300026078\|Ga0207702_10380034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1358	Open in IMG/M
3300026121\|Ga0207683_10175841	Not Available	1940	Open in IMG/M
3300028380\|Ga0268265_11496756	Not Available	678	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.21%
Environmental	Environmental	45.79%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.21%
Terrestrial	Environmental → Terrestrial	44.86%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.89%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.23%
Loam	Environmental → Terrestrial → Soil → Loam	12.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.28%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_105207772	3300000891	Soil	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSDCK*
JGI1027J12803_1009450991	3300000955	Soil	MRKYLIATALIVAFATPALAADYYVALKLGGGGCVIMDHKPGPKYKNMGGFSSRSMAKKAMHEMSDCQ
Ga0062593_1008347242	3300004114	Soil	MRKYLVTVALIVAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0062590_1020563771	3300004157	Soil	MRKHLVTVALIMAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0063356_1019694591	3300004463	Arabidopsis Thaliana Rhizosphere	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0063356_1023783792	3300004463	Arabidopsis Thaliana Rhizosphere	FAVPAFAADYYVALRVGGGGGCVIMTHAPSPTKYKMMGHYSSRSAAKKAMGTMADCK*
Ga0063356_1063919972	3300004463	Arabidopsis Thaliana Rhizosphere	MRKYLVTVALIVAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDC
Ga0062595_1011253821	3300004479	Soil	MRKYLVTVALIMAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0062592_1019884101	3300004480	Soil	MKKYLVTAGLIVAFTNAALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSM
Ga0062594_1004543822	3300005093	Soil	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ*
Ga0062594_1006760091	3300005093	Soil	MKKYLLTAALILSFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0065712_105014702	3300005290	Miscanthus Rhizosphere	MKRHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0070683_1013363672	3300005329	Corn Rhizosphere	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0070689_1019684342	3300005340	Switchgrass Rhizosphere	VTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ*
Ga0070691_101864414	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	TIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ*
Ga0070691_110755881	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRKYLVTVALIVGFATPALAADYYVALKVSGGGCMIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0070661_1002515701	3300005344	Corn Rhizosphere	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEM
Ga0070659_1000492844	3300005366	Corn Rhizosphere	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKRAMSEMSQCQ*
Ga0070667_1002639732	3300005367	Switchgrass Rhizosphere	MRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0070703_105712051	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	KELPMRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0070705_1015306601	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	PMRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0070678_1018439392	3300005456	Miscanthus Rhizosphere	MKKHLLTAALIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0070662_1000283759	3300005457	Corn Rhizosphere	FVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0070665_1000847812	3300005548	Switchgrass Rhizosphere	MKRHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMTQCQ*
Ga0070704_1008597451	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKKYLLTAALILGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0068855_1019383812	3300005563	Corn Rhizosphere	MKRHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSE
Ga0068855_1023737781	3300005563	Corn Rhizosphere	IVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0068864_1013803041	3300005618	Switchgrass Rhizosphere	MKKSLVAVGLIVGFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSDCK*
Ga0068866_113832081	3300005718	Miscanthus Rhizosphere	PMKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0066652_1017316071	3300006046	Soil	RLSQPQAKERTVMKKYLVAAGLIVVFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMHEMSECQ*
Ga0070712_1006763771	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ*
Ga0079222_100964091	3300006755	Agricultural Soil	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0079222_109068852	3300006755	Agricultural Soil	LVLIIAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSDCK*
Ga0075430_1003131134	3300006846	Populus Rhizosphere	MKKHLLTAVLIVSFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0075431_1010753281	3300006847	Populus Rhizosphere	VQEGCYCGSISSPLLLIVAFTTPALAEDYYVALKLVGGGCVIMDHKPGTKKFKIMGTFSSRSMAKKAMHEMSECQ*
Ga0075433_111274211	3300006852	Populus Rhizosphere	MRKYLVTVALIVAFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSDCK*
Ga0075434_1010172041	3300006871	Populus Rhizosphere	MRKYLVTVALIVAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSDCK*
Ga0075435_1014052311	3300007076	Populus Rhizosphere	MRKYLVTVALIVAFATPAFAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKA
Ga0111539_101526153	3300009094	Populus Rhizosphere	LPGFFDNQQRKTGKELPMRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0105245_105553691	3300009098	Miscanthus Rhizosphere	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHRPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ*
Ga0075418_121175471	3300009100	Populus Rhizosphere	MKKYLVAAGLIVAFTSPAVAADYYVALKIGGGGCVIMGHKPGPTYKNMGSFSSRSMAKRPCLR*
Ga0114129_115957752	3300009147	Populus Rhizosphere	LLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0114129_118235182	3300009147	Populus Rhizosphere	LLAGTKSEGENVMKKYLVAAGLIVAFTNAALAADYYVALKIGGGGCVIMGHKPGSTYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0111538_113238191	3300009156	Populus Rhizosphere	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKKTMS
Ga0105248_100152241	3300009177	Switchgrass Rhizosphere	MKKHLLTTVLIVGFVVPALGVEYYVVLKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0105238_100388677	3300009551	Corn Rhizosphere	MKKHLLTAALIVGFVGPALAADYYVALKVGGEGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0134125_106297001	3300010371	Terrestrial Soil	FATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0134125_118406472	3300010371	Terrestrial Soil	MRRYFIATALIVAFATPALAGDYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMA
Ga0134128_106397803	3300010373	Terrestrial Soil	RKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHRPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ*
Ga0134124_112731951	3300010397	Terrestrial Soil	QLKAWKELSMRKYLVTVALIMAFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0134127_102720294	3300010399	Terrestrial Soil	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSVAKKAMSEMSDCK
Ga0105246_120112691	3300011119	Miscanthus Rhizosphere	LTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0150985_1151652682	3300012212	Avena Fatua Rhizosphere	MRIAHLVAAGLIVVFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMHEMSECQ*
Ga0150985_1215835042	3300012212	Avena Fatua Rhizosphere	MRKYLIATALIVVFATPALAADYYVALKLGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMHEMSDCQ*
Ga0157304_10950581	3300012882	Soil	AGLIVGFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMHEMSECQ*
Ga0157303_100128744	3300012896	Soil	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSTRSMAKKAMSEMSDCK*
Ga0157293_100737773	3300012898	Soil	MKRHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSM
Ga0157288_100551231	3300012901	Soil	MKKHLLTAVLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPNYKNMGSFSSRSMAKKAMHEMSD
Ga0157296_101580212	3300012905	Soil	GLIVGFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMREMSDCR
Ga0157283_103030591	3300012907	Soil	VRAEVPAGLIVGFASPALAADYYVALKVGGGGCVLMDHKPGPKYKNMGTFSSRSMAKKAMHEMSECQ*
Ga0157286_101874321	3300012908	Soil	MKKHLVAAGLIVVFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSECQ*
Ga0157301_100126893	3300012911	Soil	MKKHLFTVALIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0157298_100366441	3300012913	Soil	KELLMRKYLVTVALIVGLATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSECQ*
Ga0157297_101865732	3300012914	Soil	NVMKEYLVAAGLIVGFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0164300_110238162	3300012951	Soil	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMHEMSDCQ*
Ga0164301_111050771	3300012960	Soil	LPGFFDNQQRKTGKELPMRKYLVTVALIVDFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0157307_10430753	3300013096	Soil	MKKHLLTAALIVGFVGPADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0157371_109256311	3300013102	Corn Rhizosphere	MRKYLVTIALIVAFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0157374_124976661	3300013296	Miscanthus Rhizosphere	MRRYFIATALIVAFATPALAGDYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMSEMNDCK*
Ga0157378_129464261	3300013297	Miscanthus Rhizosphere	MKKYLLTAALILGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0163162_105337112	3300013306	Switchgrass Rhizosphere	MKKYFAAGLIVAFASPALAADYYVALKVGGGGCVIIDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0163163_101653534	3300014325	Switchgrass Rhizosphere	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPNYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0157377_107594643	3300014745	Miscanthus Rhizosphere	MKKYLLTAALILSFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKK
Ga0157377_111951161	3300014745	Miscanthus Rhizosphere	TAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0157379_104618071	3300014968	Switchgrass Rhizosphere	LIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK*
Ga0173483_101373363	3300015077	Soil	MSFARVRTAMAGMVLATGLIVAFASPALAADYYVALKIGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMHEMSDCK*
Ga0173483_103854921	3300015077	Soil	MKKHLLTAVLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0132256_1012877462	3300015372	Arabidopsis Rhizosphere	MKRHLLTAVLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0132257_1008086404	3300015373	Arabidopsis Rhizosphere	MKKHLLTAVLIVGFVGPALGADYYVALKVGGGGCVIMDHKSGPKYKNMGSFSSRSMAKKAMSEMSDCK*
Ga0173481_102400891	3300019356	Soil	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0197907_107685161	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0210381_103738041	3300021078	Groundwater Sediment	ASGKSQGENVMKRYLVAAGLMVVFASPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGTFSSRSMAKKAMHEMSECQ
Ga0247747_10470941	3300022737	Soil	FVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0247752_10581122	3300023071	Soil	MKKHLLTAALIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK
Ga0207653_100788303	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMTQCQ
Ga0207710_103615691	3300025900	Switchgrass Rhizosphere	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK
Ga0207699_108281661	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKRHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK
Ga0207705_111995991	3300025909	Corn Rhizosphere	ELPMRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0207654_101032514	3300025911	Corn Rhizosphere	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCNRL
Ga0207663_108804841	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0207649_107405631	3300025920	Corn Rhizosphere	IVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0207649_109963892	3300025920	Corn Rhizosphere	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMA
Ga0207687_114186872	3300025927	Miscanthus Rhizosphere	KLCKELPMRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHRPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ
Ga0207687_116078891	3300025927	Miscanthus Rhizosphere	LIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0207664_118227902	3300025929	Agricultural Soil	MKKHLLTAGLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSE
Ga0207690_100706514	3300025932	Corn Rhizosphere	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKRAMSEMSQCQ
Ga0207706_104100631	3300025933	Corn Rhizosphere	MKKYLLTAALILSFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKTMGSFSSRSMAKKAMSEMSDCK
Ga0207686_110484221	3300025934	Miscanthus Rhizosphere	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHKPGPKYKVMGAFSSRSMAKKAMSEMSDCK
Ga0207665_109332351	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VAFATPALAADYDVALRLGDGGGCVIMDHKPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ
Ga0207711_120369001	3300025941	Switchgrass Rhizosphere	PPMKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0207651_105877111	3300025960	Switchgrass Rhizosphere	MRKYLVTIALIVAFATPALAADYDVALRLGDGGGCVIMDHRPGPKKYKIMGAFSSRSMAKKAMSEMSQCQ
Ga0207712_108160271	3300025961	Switchgrass Rhizosphere	MRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMA
Ga0207658_112797801	3300025986	Switchgrass Rhizosphere	MRKYLVTVALIVGFATPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEM
Ga0207702_102356084	3300026078	Corn Rhizosphere	MKKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKA
Ga0207702_103800343	3300026078	Corn Rhizosphere	GFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK
Ga0207683_101758414	3300026121	Miscanthus Rhizosphere	MKKHLLTAVLIVGFVGPALGADYYVALKVGGGGCVIMDHKPGPKYKNMGSFSSRSMAKKAMSEMSDCK
Ga0268265_114967561	3300028380	Switchgrass Rhizosphere	KKHLLTAALIVGFVGPALAADYYVALKVGGGGCVIMDHKPGPKYKNMGAFSSRSMAKKAMSEMSDCK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences