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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F092507 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 41 residues |
| Representative Sequence | GTGLGLANVHRRLTAFYGEGVKLRSFPFGTVVRLEVPAA |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.94 % |
| % of genes near scaffold ends (potentially truncated) | 97.20 % |
| % of genes from short scaffolds (< 2000 bps) | 91.59 % |
| Associated GOLD sequencing projects | 91 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.37 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (60.748 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.084 % of family members) |
| Environment Ontology (ENVO) | Unclassified (22.430 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.860 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.39% β-sheet: 17.91% Coil/Unstructured: 59.70% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF04397 | LytTR | 41.12 |
| PF00072 | Response_reg | 40.19 |
| PF02358 | Trehalose_PPase | 13.08 |
| PF14269 | Arylsulfotran_2 | 1.87 |
| PF01925 | TauE | 0.93 |
| PF07228 | SpoIIE | 0.93 |
| PF02518 | HATPase_c | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG1877 | Trehalose-6-phosphate phosphatase | Carbohydrate transport and metabolism [G] | 13.08 |
| COG0730 | Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family | Inorganic ion transport and metabolism [P] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 60.75 % |
| All Organisms | root | All Organisms | 39.25 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 13.08% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 8.41% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 7.48% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 5.61% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.61% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 4.67% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 3.74% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 3.74% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.80% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.80% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.80% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 2.80% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.87% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 1.87% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 1.87% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 1.87% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.87% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 1.87% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.93% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.93% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 0.93% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.93% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.93% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.93% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.93% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.93% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.93% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.93% |
| Switchgrass, Maize And Mischanthus Litter | Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459003 | Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm | Environmental | Open in IMG/M |
| 2170459012 | Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass | Environmental | Open in IMG/M |
| 2170459020 | Litter degradation NP2 | Engineered | Open in IMG/M |
| 2189573001 | Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml) | Environmental | Open in IMG/M |
| 3300001431 | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005447 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005540 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 | Environmental | Open in IMG/M |
| 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Environmental | Open in IMG/M |
| 3300005560 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119 | Environmental | Open in IMG/M |
| 3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006791 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 | Environmental | Open in IMG/M |
| 3300006794 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 | Environmental | Open in IMG/M |
| 3300006796 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Host-Associated | Open in IMG/M |
| 3300009789 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 | Environmental | Open in IMG/M |
| 3300010041 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A | Environmental | Open in IMG/M |
| 3300010320 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015 | Environmental | Open in IMG/M |
| 3300010337 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300011987 | Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M | Environmental | Open in IMG/M |
| 3300012198 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012937 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015 | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300013503 | Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M | Environmental | Open in IMG/M |
| 3300014498 | Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG | Environmental | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300017961 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG | Environmental | Open in IMG/M |
| 3300018072 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2 | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026306 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes) | Environmental | Open in IMG/M |
| 3300026326 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027787 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) | Environmental | Open in IMG/M |
| 3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Host-Associated | Open in IMG/M |
| 3300028755 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356 | Environmental | Open in IMG/M |
| 3300028793 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159 | Environmental | Open in IMG/M |
| 3300028811 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149 | Environmental | Open in IMG/M |
| 3300028872 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204 | Environmental | Open in IMG/M |
| 3300028875 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143 | Environmental | Open in IMG/M |
| 3300028881 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 | Environmental | Open in IMG/M |
| 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Host-Associated | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031938 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1 | Environmental | Open in IMG/M |
| 3300031939 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 | Environmental | Open in IMG/M |
| 3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
| 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Host-Associated | Open in IMG/M |
| 3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300034195 | Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| E4A_06422430 | 2170459003 | Grass Soil | LESGVGEGTGLGLANVNQRLVAHYGESVHLRSFPFGTVVRLSVPVA |
| N56_03107080 | 2170459012 | Grass Soil | GLGLANVNQRLIAHYGESVRLRSFPFGTVVRLEVPVAR |
| 2NP_00900280 | 2170459020 | Switchgrass, Maize And Mischanthus Litter | PGVGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTIVRLEVPT |
| FD2_05992080 | 2189573001 | Grass Soil | PGFGEGTGLGLANVNLRLTAHYGEGVQLRSFPFGTVVRMDVPAT |
| F14TB_1000476951 | 3300001431 | Soil | VGEGDGVGLGLANVHQRLTAFYGEGVRLKSGGFGTVVRLNVPAE* |
| Ga0070711_1002302201 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | PGVGEGDGAGLGLANVHQRLTTFYGEGVRLKSGAFGTVVRLHVPAE* |
| Ga0066689_108689312 | 3300005447 | Soil | HAGTGLGLASVHHRLTAFYGEGVKLRSFPFGTVVRLEVPVS* |
| Ga0070706_1016225781 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | GVGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTVVRLEVPLG* |
| Ga0070734_105220102 | 3300005533 | Surface Soil | VGDGTGIGLANVDRRLTAHYGAGVRLRSFPFGTVVRLEVPAS* |
| Ga0068853_1010174222 | 3300005539 | Corn Rhizosphere | GEGTGLGLANVNMRLVAHYGESVQLRSFPFGTVVRLRVPVA* |
| Ga0068853_1019583362 | 3300005539 | Corn Rhizosphere | EQGVGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTVVRLEVPLG* |
| Ga0066697_101113561 | 3300005540 | Soil | AGLGLANVHQRLTAFYGEGVRLKSGGFGTVVRLDVPV* |
| Ga0070693_1014380541 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | VGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTVVRLEVPLG* |
| Ga0066670_108291731 | 3300005560 | Soil | GLANVHQRLTAFYGEGVRLKSGGFGTVVRLDVPVE* |
| Ga0075432_105250901 | 3300006058 | Populus Rhizosphere | GVGDGTGLGLANVNLRLTAHYGAGVRLRSFPFGTIVRLEVPTAR* |
| Ga0070712_1000907385 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | DGAGLGLANVHGRLTAFYGEGVRLKSGGFGTVVTLDVPAG* |
| Ga0070712_1004611303 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | EGTGLGLANVNRRLVAHYGEEVRLRSFPFGTVVRLEVPIA* |
| Ga0068871_1004213723 | 3300006358 | Miscanthus Rhizosphere | LANVNLRLTAHYGEGVRLRSFPFGTVVRLDVPASSEPS* |
| Ga0079222_102975481 | 3300006755 | Agricultural Soil | EPGVGEGTGLGLANVNRLLTAHYGEGVRLRSFPFGTVVRLEVPAA* |
| Ga0066653_102120253 | 3300006791 | Soil | GDGAGLGLANVHRRLTAFYGEGVRLKSGGFGTVVRLDVPAS* |
| Ga0066658_103695942 | 3300006794 | Soil | GVGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTIVRLEVPTAP* |
| Ga0066665_102160031 | 3300006796 | Soil | LGLANVHQRLTAFYGEGVRLKSGGFGTVVRLDVPVGH* |
| Ga0079220_101193553 | 3300006806 | Agricultural Soil | GLANVHQRLTAFYGEGARLKSGGFGTVVRLDVPAE* |
| Ga0075434_1014369102 | 3300006871 | Populus Rhizosphere | LANVHQRLTAFYGEGVRLKSGGFGTIVRLQVPAG* |
| Ga0075426_108945472 | 3300006903 | Populus Rhizosphere | GDGAGLGLANVHQRLTAFYGEGVRLKSGGFGTIVRLQVPAG* |
| Ga0075424_1013964971 | 3300006904 | Populus Rhizosphere | ESDGLGLANVHGRLTAFYGEGVRLKSGVFGTVVRLQVPAA* |
| Ga0079219_106952002 | 3300006954 | Agricultural Soil | GVGEGTGLGLANVNTRLTAHYGEGVRLRSFPFGTVVRLEVPAA* |
| Ga0079219_109066971 | 3300006954 | Agricultural Soil | DGTGVGLANVNRRLQVHYGGGVRLRSFPFGTVVRLEVPAA* |
| Ga0075435_1004397261 | 3300007076 | Populus Rhizosphere | EGEGTGLGLASVNHRLTVFYGEGVKLRSFPFGTVVRLEVPVS* |
| Ga0099829_112692632 | 3300009038 | Vadose Zone Soil | VGLANVNRRLQAHYGEGVKLRSFPFGTIVRLEVPAA* |
| Ga0114129_114430201 | 3300009147 | Populus Rhizosphere | GLGLASVNHRLTVFYGEGVKLRSFPFGTVVRLEVPVS* |
| Ga0075423_103801501 | 3300009162 | Populus Rhizosphere | PGVSEGDGTGLGLAGVHRRLTAVYGRGVRLRSSSIGTVVRLEVPVS* |
| Ga0075423_113880671 | 3300009162 | Populus Rhizosphere | PGTSESDGLGLANVHGRLTAFYGEGVRLKSGVFGTVVRLQVPA* |
| Ga0105241_101426211 | 3300009174 | Corn Rhizosphere | LGLANVNLRLTAHYGEGVRLRSFPFGTVVRLEVPLG* |
| Ga0126307_101093043 | 3300009789 | Serpentine Soil | GDSAGTGLGLANVHRRLTAFYGEGVKLRSFPFGTVVRLEVPAA* |
| Ga0126312_103760203 | 3300010041 | Serpentine Soil | GTGLGLANVHRRLTAFYGEGVKLRSFPFGTVVRLEVPAA* |
| Ga0126312_110331502 | 3300010041 | Serpentine Soil | SLGESAGTGLGLANVHHRLTAFYGEGVKLRSFPFGTVVRLEVPAA* |
| Ga0134109_102367061 | 3300010320 | Grasslands Soil | PGVGEGDGAGLGLANVHRRLTAFYGAGVRLKSGGFGTVVRLEVPAA* |
| Ga0134062_103445682 | 3300010337 | Grasslands Soil | ARLGLANVHQRLTAFYGEGVRLKSGGFGTVVRLDVPV* |
| Ga0126377_118823221 | 3300010362 | Tropical Forest Soil | LGLASVHHRLQAFYGEGVKLRSFPFGTVVRLEVPVS* |
| Ga0134126_115504522 | 3300010396 | Terrestrial Soil | GTGLGLASVHHRLTAFYGEGVKLRSFPFGTVVRLEVPVA* |
| Ga0134121_104817011 | 3300010401 | Terrestrial Soil | GVGEGTGLGLANVHLRLNAHYGEGVRLRSFPFGTIVRLEVPTAQ* |
| Ga0120164_10364782 | 3300011987 | Permafrost | MLGQLADEVGGEGTGLGLANVNLRLTAHYGKGVKLRSFPFGTVVRLEVPLG* |
| Ga0137364_107846182 | 3300012198 | Vadose Zone Soil | GDGAGLGLANVHQRLTAFYGEGVRLKSGGFGTVVRLDVPVE* |
| Ga0137379_116509182 | 3300012209 | Vadose Zone Soil | LSNVHGRLTAFYGEGVRLKSGGFGTVVRLDVPAG* |
| Ga0162653_1000392002 | 3300012937 | Soil | GESNGLGLANVHGRLTAFYGEGVRLKSGVFGTVVRLQVPAA* |
| Ga0164300_102729452 | 3300012951 | Soil | EGTGLGLANVHLRLNAHYGEGVRLRSFPFGTIVRLEVPTAQ* |
| Ga0164300_109557762 | 3300012951 | Soil | EGTGLGLANVNRLLTAHYGAGVRLRSFPFGTVVRLEVPTA* |
| Ga0164302_114419062 | 3300012961 | Soil | GVGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTVVRLDVPASSEPS* |
| Ga0134087_105635881 | 3300012977 | Grasslands Soil | GTGLGLANVNRRLTAHYGESVRLRSFPFGTVVRLEVPAA* |
| Ga0134087_107769101 | 3300012977 | Grasslands Soil | GAGLGLANVHRRVTAFYGEGVRLKSGGFGTVVRLDVPAA* |
| Ga0164307_103644211 | 3300012987 | Soil | GLANVNRLLTAHYGEGVRLRSFPFGTVVRLEVPAA* |
| Ga0164307_109949032 | 3300012987 | Soil | DGTGLGLANVNRRLQAHYGAGVRLRSFPFGTVVRLEVPAG* |
| Ga0164305_111047942 | 3300012989 | Soil | GLANVHGRLTAFYGEGVRLKSGGFGTVVRLDVPAG* |
| Ga0157370_107518091 | 3300013104 | Corn Rhizosphere | GLANVNMRLVAHYGESVQLRSFPFGTVVRLQVPVA* |
| Ga0157375_136655631 | 3300013308 | Miscanthus Rhizosphere | LGLANVDRRLRAFYGEGVRLKSGAFGTVVRLHVPAE* |
| Ga0120127_100794712 | 3300013503 | Permafrost | GLGLANVNRRLTAHYGEGVRLRSFPFGTVVRLEVPV* |
| Ga0182019_112306562 | 3300014498 | Fen | MGLGLANVHGRLTAHYGEGVKLRSFPFGTVARLEVPVSEDDA* |
| Ga0132257_1007381832 | 3300015373 | Arabidopsis Rhizosphere | GTGLGLASVHRRLRAAYGEGVKLRSSPIGTVVRLQVPVG* |
| Ga0132257_1030135972 | 3300015373 | Arabidopsis Rhizosphere | LEPGVGEGTGLGLANVNRLLTAHYGAGVRLRSFPFGTVVRLEVPTA* |
| Ga0187778_111209232 | 3300017961 | Tropical Peatland | DGTGLGLASVHRRLTAFYGEGVRLRSFPFGTVVRLAVPVS |
| Ga0184635_102913911 | 3300018072 | Groundwater Sediment | GLANVHGRLTAFYGEGVRLKSGVFGTVVRLQVPAA |
| Ga0066667_119614912 | 3300018433 | Grasslands Soil | GLGLANVHPRLTAFYGEGVRLKSGGFGTVVRLDVPVE |
| Ga0206354_104898501 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | GTGLGLANVNLRLTAHYGAGVRLRSFPFGTVVRLEVPLG |
| Ga0206353_118618375 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | LEPGVGEGTGIGLANVNLRLTAHYGEGVKLRSFPFGTIVMLEVPE |
| Ga0222622_100296786 | 3300022756 | Groundwater Sediment | EDGLGLANVHQRLTAFYGEGVRLKSGVFGTVVRLQVPA |
| Ga0207692_101262681 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | GLGLANVHQRLTAFYGEGVRLKSGGFGTIVRLQVPAG |
| Ga0207707_102409571 | 3300025912 | Corn Rhizosphere | PGVGEGTGIGLANVNLRLTAHYGEGVKLRSFPFGTIVMLEVPE |
| Ga0207707_111869022 | 3300025912 | Corn Rhizosphere | LEAGVGEGTGLGLANVNMRLVAHYGESVQLRSFPFGTVVRLRVPVA |
| Ga0207660_105582472 | 3300025917 | Corn Rhizosphere | EGDGAGLGLANVHQRLTAFYGEGVRLKSGGFGTIVRLQVPADEASLAMPI |
| Ga0207660_105787043 | 3300025917 | Corn Rhizosphere | GTGIGLANVNLRLTAHYGEGVKLRSFPFGTVVRLEVPAVPV |
| Ga0207649_116648281 | 3300025920 | Corn Rhizosphere | GVGEGTGIGLANVNLRLTAHYGEGVKLRSFPFGTVVRLEVPE |
| Ga0207686_109602572 | 3300025934 | Miscanthus Rhizosphere | GAGLGLANVHQRLTAFYGEGVRLKSGGFGTIVRLQVPAG |
| Ga0207712_115493821 | 3300025961 | Switchgrass Rhizosphere | GEGDGPGLGLANVHQRLTTFYGEGVRLKSGGFGTVVRLHVPAE |
| Ga0207702_116389861 | 3300026078 | Corn Rhizosphere | EGTGIGLANVNLRLTAHYGEGVKLRSFPFGTVVRLEVPE |
| Ga0207676_119957482 | 3300026095 | Switchgrass Rhizosphere | GVGGGMGLGLASVDLRLKAHYGEGVRLRSSPLGTVVRLAVPVE |
| Ga0209468_10837503 | 3300026306 | Soil | GDGAGLGLANVHRRLTAFYGEGVRLKSGGFGTVVRLDVPAS |
| Ga0209801_10935933 | 3300026326 | Soil | LGLANVHQRLTAFYGEGVRLKSGGFGTVVRLDVPVE |
| Ga0209177_102006112 | 3300027775 | Agricultural Soil | DGTGVGLANVNRRLQVHYGGGVRLRSFPFGTVVRLEVPAA |
| Ga0209074_101257851 | 3300027787 | Agricultural Soil | GEGTGLGLANVNRLLTAHYGEGVRLRSFPFGTVVRLEVPAA |
| Ga0209814_100064481 | 3300027873 | Populus Rhizosphere | EGDGAGLGLANVHRRLTAFYGEGVRLKSGGFGTVVRLEVPAA |
| Ga0265318_103467832 | 3300028577 | Rhizosphere | LGLANVHGRLTAHYGEGVKLRSFPFGTVARLEVPVSEDDA |
| Ga0307316_101128693 | 3300028755 | Soil | GEGDGAGLGLANVHQRLTTFYGEGVRLKSGAFGTVVRLHVPVE |
| Ga0307299_103292012 | 3300028793 | Soil | EPGVGEGTGLGLANVNRLLTAHYGAGVQLRSFPFGTVVRLEVPTA |
| Ga0307292_102839001 | 3300028811 | Soil | PGVGEGNGVGLGLANVNQRLTAFYGEGVRLKSGGFGTVVRLDVPAA |
| Ga0307292_103194471 | 3300028811 | Soil | LGLANVHQRLTTFYGEGVRLKSGGFGTVVRLNVPAE |
| Ga0307314_102559801 | 3300028872 | Soil | GESNGLGLANVHGRLTAFYGEGVRLKSGVFGTVVRLQVPAA |
| Ga0307289_101219421 | 3300028875 | Soil | EPGVGEGNGVGLGLANVNQRLTAFYGEGVRLKSGGFGTVVRLDVPAA |
| Ga0307277_104030302 | 3300028881 | Soil | GVGSADGAGLGLANVHRRLTAFYGEGVRLKSGAFGTVVRLEVPA |
| Ga0265330_102724131 | 3300031235 | Rhizosphere | VGVGDGTGLGLANVNQRLIAHYGESVRLRSFPFGTVVRLEVPVA |
| Ga0310813_104676883 | 3300031716 | Soil | AGTGLGLASVHHRLTAFYGEGVKLRSFPFGTVVRLEVPVA |
| Ga0307469_110108562 | 3300031720 | Hardwood Forest Soil | GVSEREGTGLGLASVHHRLNAFYGEGVKLRSFPFGTVVRLEVPVS |
| Ga0318502_108339412 | 3300031747 | Soil | TGVGLANVHRRLEAHYGSGVRLRSFPFGTVVRLEVPAA |
| Ga0318521_103232241 | 3300031770 | Soil | LEPGVGEGTGLGLANVNRRLTAHYGEGVKLRSFPFGTVVRMEVPAA |
| Ga0308175_1013964942 | 3300031938 | Soil | PGVGGGDGAGLGLANVHRRLTAFYGEGVRLKSGGFGTVVRLDVPA |
| Ga0308174_116726711 | 3300031939 | Soil | TGLGLANVHRLLTAHYGEGVRLRSFPFGTVVMLEVPV |
| Ga0308176_104318961 | 3300031996 | Soil | GAGLGLANVHRRLTAFYGEGVRLKSGGFGTVVRLDVPA |
| Ga0307411_121184411 | 3300032005 | Rhizosphere | ESAGTGLGLANVHHRLTAFYGEGVKLRSFPFGTVVRLEVPAA |
| Ga0318553_100518281 | 3300032068 | Soil | FGDGTGVGLANVQLRLAAHYGSGVRLRSSPLGTIVSLEVPVA |
| Ga0307471_1027608692 | 3300032180 | Hardwood Forest Soil | PGVSEREGTGLGLASVNHRLTAFYGEGVRLRSFPFGTVVRLEVPTS |
| Ga0307471_1038929991 | 3300032180 | Hardwood Forest Soil | EPGVSEGEGTGLGLASVNHRLTVFYGEGVKLRSFPFGTVVRLEVPVS |
| Ga0335085_101912891 | 3300032770 | Soil | TGVGLANVQLRLEAHYGSGVRLRSSPLGTVVSLEVPAA |
| Ga0335070_103642171 | 3300032829 | Soil | TGLGLANVDRRLTAHYGEGVRLRSFPFGTVVRLEVPIG |
| Ga0335072_107780981 | 3300032898 | Soil | AGTGLGLASVDGRLTAFYGQGVRLRSFPFGTVVRLEVPV |
| Ga0335083_101016307 | 3300032954 | Soil | GVGEGTGLGLANVNLRLTAHYGEGVRLRSFPFGTVVRLEVPV |
| Ga0335084_120755191 | 3300033004 | Soil | LGLANVHLRLTAHYGEGVRLRSFPFGTVVRLEVPVA |
| Ga0370501_0404392_363_491 | 3300034195 | Untreated Peat Soil | VGEGTGLGLANVNRRLIAHYGESVRLRSFPFGTVVRLEVPVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |