Metagenome / Metatranscriptome Family F092578

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092578
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	42 residues
Representative Sequence	LKRQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFTNP
Number of Associated Samples	82
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.34 %
% of genes near scaffold ends (potentially truncated)	68.22 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.785 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.907 % of family members)
Environment Ontology (ENVO)	Unclassified (47.664 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.271 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.38% β-sheet: 0.00% Coil/Unstructured: 53.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF05870	PA_decarbox	14.95
PF13372	Alginate_exp	12.15
PF00158	Sigma54_activat	9.35
PF00171	Aldedh	8.41
PF02954	HTH_8	6.54
PF00857	Isochorismatase	5.61
PF01408	GFO_IDH_MocA	5.61
PF08447	PAS_3	4.67
PF00561	Abhydrolase_1	1.87
PF08240	ADH_N	0.93
PF01527	HTH_Tnp_1	0.93
PF02518	HATPase_c	0.93
PF00484	Pro_CA	0.93
PF00512	HisKA	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3479	Phenolic acid decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	14.95
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	8.41
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	8.41
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	8.41
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	5.61
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.61
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.79 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.79 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.79 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.95 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	11.21 %
Unclassified	root	N/A	11.21 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	11.21 %
Unclassified	root	N/A	11.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.21 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	10.28 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.21 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1.87 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.93 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.21 %
Caballeronia udeis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia udeis	1.87 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.87 %
Edaphobacter bradus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	0.93 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001142\|JGI12702J13316_10019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2368	Open in IMG/M
3300001867\|JGI12627J18819_10309580	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300002245\|JGIcombinedJ26739_101811502	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300004152\|Ga0062386_101564151	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005541\|Ga0070733_10455842	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300005555\|Ga0066692_10328835	All Organisms → cellular organisms → Bacteria → Proteobacteria	970	Open in IMG/M
3300005555\|Ga0066692_10856678	Not Available	557	Open in IMG/M
3300005568\|Ga0066703_10584299	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300005602\|Ga0070762_10755572	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300005712\|Ga0070764_10417854	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300005718\|Ga0068866_10839935	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300005921\|Ga0070766_11095446	Not Available	550	Open in IMG/M
3300006028\|Ga0070717_11486889	Not Available	615	Open in IMG/M
3300006173\|Ga0070716_101009129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia udeis	658	Open in IMG/M
3300006176\|Ga0070765_101053812	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	768	Open in IMG/M
3300006797\|Ga0066659_11753239	Not Available	524	Open in IMG/M
3300006847\|Ga0075431_100889287	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300007076\|Ga0075435_100867817	All Organisms → cellular organisms → Bacteria → Acidobacteria	786	Open in IMG/M
3300007265\|Ga0099794_10338961	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300007788\|Ga0099795_10191645	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300009038\|Ga0099829_10175833	All Organisms → cellular organisms → Bacteria → Acidobacteria	1721	Open in IMG/M
3300009089\|Ga0099828_10780119	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300011270\|Ga0137391_10366298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	1236	Open in IMG/M
3300011271\|Ga0137393_10266207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1456	Open in IMG/M
3300012189\|Ga0137388_10596031	All Organisms → cellular organisms → Bacteria → Acidobacteria	1027	Open in IMG/M
3300012202\|Ga0137363_10544050	Not Available	978	Open in IMG/M
3300012202\|Ga0137363_11134345	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012205\|Ga0137362_11024392	Not Available	703	Open in IMG/M
3300012361\|Ga0137360_11226681	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300012924\|Ga0137413_10183973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1392	Open in IMG/M
3300012925\|Ga0137419_11062492	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300012927\|Ga0137416_10626651	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300015054\|Ga0137420_1437368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1943	Open in IMG/M
3300018433\|Ga0066667_10064587	All Organisms → cellular organisms → Bacteria	2283	Open in IMG/M
3300018468\|Ga0066662_12594252	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300019887\|Ga0193729_1066041	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300019890\|Ga0193728_1191336	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300020062\|Ga0193724_1057200	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300020580\|Ga0210403_10739847	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300020580\|Ga0210403_11337728	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300020581\|Ga0210399_10589925	All Organisms → cellular organisms → Bacteria → Acidobacteria	920	Open in IMG/M
3300020581\|Ga0210399_10680812	All Organisms → cellular organisms → Bacteria → Acidobacteria	846	Open in IMG/M
3300020582\|Ga0210395_10381863	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300020583\|Ga0210401_10127171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2389	Open in IMG/M
3300020583\|Ga0210401_10962823	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300020583\|Ga0210401_11569671	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300021168\|Ga0210406_11271434	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300021170\|Ga0210400_10051523	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300021170\|Ga0210400_10294576	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1331	Open in IMG/M
3300021170\|Ga0210400_10358864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1200	Open in IMG/M
3300021170\|Ga0210400_11362864	Not Available	566	Open in IMG/M
3300021178\|Ga0210408_10160346	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300021344\|Ga0193719_10156777	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300021404\|Ga0210389_10535251	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300021405\|Ga0210387_11266341	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300021420\|Ga0210394_11268298	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300021432\|Ga0210384_11702946	Not Available	536	Open in IMG/M
3300021433\|Ga0210391_10866560	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300021474\|Ga0210390_10227100	Not Available	1580	Open in IMG/M
3300021478\|Ga0210402_10892228	All Organisms → cellular organisms → Bacteria → Acidobacteria	815	Open in IMG/M
3300021478\|Ga0210402_11478990	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300021478\|Ga0210402_11665657	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300021478\|Ga0210402_11791386	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300021559\|Ga0210409_11035073	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300024330\|Ga0137417_1128635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1151	Open in IMG/M
3300024330\|Ga0137417_1417481	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300025905\|Ga0207685_10345000	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300026356\|Ga0257150_1030016	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300026374\|Ga0257146_1021746	All Organisms → cellular organisms → Bacteria → Acidobacteria	1042	Open in IMG/M
3300026374\|Ga0257146_1045773	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300026482\|Ga0257172_1107200	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300026489\|Ga0257160_1007528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1469	Open in IMG/M
3300026499\|Ga0257181_1059588	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300026998\|Ga0208369_1021104	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300027034\|Ga0209730_1036642	Not Available	563	Open in IMG/M
3300027073\|Ga0208366_1002989	All Organisms → cellular organisms → Bacteria → Acidobacteria	1553	Open in IMG/M
3300027174\|Ga0207948_1003596	All Organisms → cellular organisms → Bacteria → Acidobacteria	1749	Open in IMG/M
3300027603\|Ga0209331_1158627	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300027869\|Ga0209579_10245640	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300027875\|Ga0209283_10921144	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300027884\|Ga0209275_10280724	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300027889\|Ga0209380_10166314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1292	Open in IMG/M
3300027907\|Ga0207428_10564353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	822	Open in IMG/M
3300028020\|Ga0265351_1005892	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300028023\|Ga0265357_1036503	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300030991\|Ga0073994_10002768	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300031708\|Ga0310686_107958806	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300031715\|Ga0307476_11188789	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300031718\|Ga0307474_10078153	All Organisms → cellular organisms → Bacteria	2459	Open in IMG/M
3300031718\|Ga0307474_10796614	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300031718\|Ga0307474_10829112	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300031720\|Ga0307469_10561045	All Organisms → cellular organisms → Bacteria → Acidobacteria	1013	Open in IMG/M
3300031754\|Ga0307475_10169741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1738	Open in IMG/M
3300031820\|Ga0307473_10296002	All Organisms → cellular organisms → Bacteria → Acidobacteria	1016	Open in IMG/M
3300031820\|Ga0307473_10578444	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300031962\|Ga0307479_10295085	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300031962\|Ga0307479_10576377	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300031962\|Ga0307479_10705656	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300031962\|Ga0307479_11527029	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300031962\|Ga0307479_11696090	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300031962\|Ga0307479_12102424	Not Available	512	Open in IMG/M
3300032174\|Ga0307470_10040937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2294	Open in IMG/M
3300032180\|Ga0307471_102398929	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300032180\|Ga0307471_103477105	Not Available	557	Open in IMG/M
3300032180\|Ga0307471_103810349	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300032205\|Ga0307472_100420557	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300032205\|Ga0307472_100856949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia udeis	836	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.33%
Host-Associated	Host-Associated	4.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.39%
Plants	Host-Associated → Plants	4.67%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.50%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	18.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001142	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028020	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12702J13316_100191	3300001142	Forest Soil	LKRRKKKGGELPVDLVKLVKIAISPVLGKGLAEFEVAFTNP
JGI12627J18819_103095802	3300001867	Forest Soil	LKGQKKKGGKLPVDLVKLAKIAISPVLGKGLAEFE
JGIcombinedJ26739_1018115021	3300002245	Forest Soil	LKXQXKXXGKLLVDLVKLAKIAISPVLGKGLAEFEVAFTNP*
Ga0062386_1015641511	3300004152	Bog Forest Soil	MRTIRKRLKIQKKYDGNLLVDLGKLAKIAISPVLGKGLAEFEVAFTNP*
Ga0070733_104558423	3300005541	Surface Soil	LKRQKKKSGKLSVDLVKLVKIAISPIPGKDLAEFEAA
Ga0066692_103288351	3300005555	Soil	LKRQKKKRGKLAVDLVKLAKIAISPVLGKGLAEFEVAFT
Ga0066692_108566782	3300005555	Soil	LKRQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFTNP*
Ga0066703_105842991	3300005568	Soil	KGGKLPVDLVKLAKIAISPVLGKGLAEFEVAFTNP*
Ga0070762_107555721	3300005602	Soil	LKRQKKKGGKLPVDLVKLAKIAISPVLGKGLAEFEVAFPF
Ga0070764_104178542	3300005712	Soil	RKRLKRQKKKGGKLLVDLVKLAKIAISPVFGKGLAEFEVAFANP*
Ga0068866_108399351	3300005718	Miscanthus Rhizosphere	LPVDLVKLAKIAISPVLGKGLAESEVAFMNPVARLL*
Ga0070766_110954461	3300005921	Soil	KGGKLPVDLVKLAKIAISPVLGKVLAEFEVAFTNP*
Ga0070717_114868891	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PKRLKGQKKKGGKLLADLVKLAKIAISPVLGKGLAEFEVAFTNPVADLL*
Ga0070716_1010091292	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LKRQKKKGGKLLVDLVKLVEIAISPVLKKKGLAAFEEAFTNPVAHLL*
Ga0070765_1010538123	3300006176	Soil	RQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEAAPTNP*
Ga0066659_117532391	3300006797	Soil	RLKRQKKKGGKLLVDLVKLVEIAISPVLRKGLAEFEEAFTNPVAHLL*
Ga0075431_1008892871	3300006847	Populus Rhizosphere	RTIRKRLKIQKKKSGKLAVDLVKLAKIAISPVLGKGLAEFEVAFTNP*
Ga0075435_1008678172	3300007076	Populus Rhizosphere	RTEEKKGKLPVNLVKLAKIAISPVMGKGLAEFEVAFTNP*
Ga0099794_103389612	3300007265	Vadose Zone Soil	LPVDLVKLAKIAISPVLGNGLAEFEVAFTNPVAHLL*
Ga0099795_101916451	3300007788	Vadose Zone Soil	LKRQKKYDGKLLVDLGKLAKIAISPVLRKSLADFEVVFTNP
Ga0099829_101758331	3300009038	Vadose Zone Soil	RLKRQKRRGGKRLVDLVRMAKIAISPALGKGLVEFEVAFTNPVAHLL*
Ga0099828_107801191	3300009089	Vadose Zone Soil	LKRQKKKGGKLTVDLVKLAKIAISPILGKGLAEFEVAFTNP*
Ga0137391_103662981	3300011270	Vadose Zone Soil	KRLKGQKKKRGKVLGELVKLAKIAISPVLRKGLAEFEVAFANP*
Ga0137393_102662071	3300011271	Vadose Zone Soil	LKRQKKKGGKLAVDLVKLAKIAISPVLGNGLAEFEVAFTNPVAH
Ga0137388_105960312	3300012189	Vadose Zone Soil	LKGQKKKGPKVLVNFVKLAKIAISPVLGNGVAEFEEAFTNPVAHLL*
Ga0137363_105440502	3300012202	Vadose Zone Soil	MRTIRMRLKRQKKKGAKLPVFLVKLAKIAISPVLAKGLAEFEVALTNP*
Ga0137363_111343452	3300012202	Vadose Zone Soil	LKRQKKKGGKLLVDLVELAKIAISAVLGKGLAEFEVAFANP*
Ga0137362_110243922	3300012205	Vadose Zone Soil	MRTIRMRLKRQKKKGAKLPVLLVKLAKIAISPVLAKGLAEFEVALTNP*
Ga0137360_112266811	3300012361	Vadose Zone Soil	LKRQKKKGGKPPVDLVKLAKIAISPVLGNGLAEFEVAFTNPVAHR
Ga0137413_101839733	3300012924	Vadose Zone Soil	LKRQKKKGGKLAVDLVKLAKLAISPVLGNGLAEFEVAFTNPVAH
Ga0137419_110624922	3300012925	Vadose Zone Soil	MRLKRQKKKGAKLPVFLVKLAKIAISPVLAKGLAEFEVALTNP*
Ga0137416_106266512	3300012927	Vadose Zone Soil	GKLPVDLVKLAKIAISPVLGNGLAEFEVAFTNPVARLL*
Ga0137420_14373681	3300015054	Vadose Zone Soil	LKRQKKKGGKLPVDLVKLAKIAISPVLGKGLAEFEVAFTNSGVH
Ga0066667_100645871	3300018433	Grasslands Soil	LKRQKKKGGKLLVDLVKLVEIAISPVLRKGLAEFEEAFTNPVAHLL
Ga0066662_125942522	3300018468	Grasslands Soil	LKRQKKKRGKLAVDLVKLAKIAISPVLGKGLAEFEVAFTN
Ga0193729_10660411	3300019887	Soil	KRLKKQKKKGGKLLVDLVKLAEIAISPVLGKGLAEFEVAFTNP
Ga0193728_11913361	3300019890	Soil	KGQKKKGGKLPVNLVKLAKIAISPVLGKGLAEFEVAFTNP
Ga0193724_10572001	3300020062	Soil	KGGKLLVDLVKLAKTAISPVLGKGLAEFEVAFANS
Ga0210403_107398472	3300020580	Soil	IRKRLKRQKKKGGKLLVDLVRLAKIAISPVLGKGLAEFEAAFANP
Ga0210403_113377281	3300020580	Soil	LKRQKKKSGKLPVDLVKLAKIAISPVLGKGLAEFEVAFTNP
Ga0210399_105899251	3300020581	Soil	QKKKKKSGKLSMDLVKLAKIAISPALGKGLLAEFEVALTNP
Ga0210399_106808121	3300020581	Soil	KKGGKLPVDLVKLAKIAISPVLAKGLDEFEVAFTNP
Ga0210395_103818632	3300020582	Soil	KGQKKKGPKVLVNFVKLAKIAISPVPRKGLAEFEVAFTNP
Ga0210401_101271711	3300020583	Soil	RLKRQKKKEGKLLVDLVKLAKLAISPVLGKGLAEFEVAFANP
Ga0210401_109628232	3300020583	Soil	LKRQKKKGGKLLVDLVKLVEIAISPILRKGLAEFEEAFTNPAAHL
Ga0210401_115696711	3300020583	Soil	KKGGKLPVDLVKLAKIAISPALGKGLAEFEVAFTNP
Ga0210406_112714341	3300021168	Soil	KKGGKLLVDLVKLAKIAISPVFGKGLAEFELAFANS
Ga0210400_100515233	3300021170	Soil	LKRQKKKGGKLPVDLVKLAEIAISPVLGKALAEFEVAFTKP
Ga0210400_102945763	3300021170	Soil	LKRQKNRGEKLPLDVVKLAKIAISPVLAKGLAEFEVAF
Ga0210400_103588641	3300021170	Soil	LKRQKKKGGKLLVDLVKLVEIAISPVLRKKGLAEFEVAFTNPVAHLL
Ga0210400_113628642	3300021170	Soil	IRKRLKGHKKKGGKLLVNFVKLAKVAISPVMGKGLAEYEVAFANP
Ga0210408_101603463	3300021178	Soil	CKRRTIPKRLKRQKKKEGKLLVDLVKLAKLAISPVLGKGLAEFEVAFANP
Ga0193719_101567771	3300021344	Soil	RLKRQKKKGGKLPVDLVKLAEIAISPVLGKGLAEFEVAFANP
Ga0210389_105352511	3300021404	Soil	RPIRKRLKRQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFTNP
Ga0210387_112663412	3300021405	Soil	LKKQKKKGGKLLVDLVKLAKIAISPVFGKGLAEFEVAFANP
Ga0210394_112682981	3300021420	Soil	LKREKKKGGKLPVNLVKLAKIAISPVLGSGLAEFEVAFPFC
Ga0210384_117029461	3300021432	Soil	LKRQKKRGGKLPVDLVKLAKIAISPVLGKGLAEFEVAFTNPVAHLL
Ga0210391_108665601	3300021433	Soil	IRKRLKRQKKKGGKLLVDLVKLAKIAIPPVLGKGLAEFEVAFTNP
Ga0210390_102271002	3300021474	Soil	MPKRLKGQKKKGGKLLADLVKLAKIAISPVLGKGPTEFEVAFTNP
Ga0210402_108922281	3300021478	Soil	RLKRQKKTGGKLLVDLVKLAKIAIPPVLGKGLAEFEVAFTNP
Ga0210402_114789902	3300021478	Soil	LKRQKNRGEKLPLDVVKLAKIAISPVLRKDLAEFEVAFTNPQ
Ga0210402_116656571	3300021478	Soil	RRTIRKRLKRQKKKGGKLLVDLVKLAEIAISPVFGKGLAEFEVAFTNP
Ga0210402_117913862	3300021478	Soil	MPKRLKGQKKKGGKLLADLVKLAKIAISPVLGKGPAEFEVAFTNP
Ga0210409_110350731	3300021559	Soil	LKKQKKKGGKLLVDLVKLAKTAISPVLGKGLAEFEVAFANS
Ga0137417_11286353	3300024330	Vadose Zone Soil	LKRQKKKGGKLLVDLVKLVEIAISPVLRKDLAEFEVAFTI
Ga0137417_14174812	3300024330	Vadose Zone Soil	LKRQKKKGGKLTVDLVKLAKIAVSPILGKGLAEFEVAFTNP
Ga0207685_103450001	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	KKKGGKLPVDLVKLAKIAISPVLAKGLAEFEVAFTNP
Ga0257150_10300162	3300026356	Soil	LKRQKKKGGKLPVDLVKLAKIAISPVLGNSLAEFEVAFTNPVAHR
Ga0257146_10217461	3300026374	Soil	RKRLKKQKKKGGKLLGDLVKLAKTAISPVLGKGLAEFEVAFANS
Ga0257146_10457731	3300026374	Soil	LKRQKKKGGKLPVDLVKLAKIAISPVLGKGLAEFEVAFTN
Ga0257172_11072002	3300026482	Soil	LKKQKKKGGKLLVDLVKLAKIAISPILGKGLAEFEVAFTNP
Ga0257160_10075283	3300026489	Soil	LKRQKKKGGKLPVDLVKLAKIAISPVLGNGLAEFEVAFT
Ga0257181_10595882	3300026499	Soil	KKKGGKLPVDLVKLAKIAISPILGKGLAEFEVAFTNP
Ga0208369_10211041	3300026998	Forest Soil	LKRQKKREGRLPVNLVKLAEIAISPVLGKGLAEVEV
Ga0209730_10366421	3300027034	Forest Soil	KRQKKKGGKLPLDLVKLAKIAISPVLRKKGLAEFEVAFTNPVAHRL
Ga0208366_10029891	3300027073	Forest Soil	RKGGKLLVDLVKLAEIAISPVLGKGLAEFEVAFTNP
Ga0207948_10035962	3300027174	Forest Soil	LKRQKKKEAKLLVDLVKLAKLAISPVLGKGLAEFEVAFANP
Ga0209331_11586272	3300027603	Forest Soil	LKKQKKKGGKLPVDLVKLAKTAISPVLEKGLAEFEVALTNP
Ga0209579_102456401	3300027869	Surface Soil	RLKGQKKKGGKQGVNLVKLAKIAISPVLGKGLIEFEVAFTNP
Ga0209283_109211442	3300027875	Vadose Zone Soil	QKKKCGKLPVDLVKLAKIAISPVLGKGLAEFEVAFTNP
Ga0209275_102807242	3300027884	Soil	LKRQKKKGGKLPVDLVKLAKIAISPVLGKGLAEFEVAF
Ga0209380_101663143	3300027889	Soil	KRRAIRKRLKRQKNKGGKLLVDLVKLAKIAISPVLGKGPAEFKVAFTNP
Ga0207428_105643533	3300027907	Populus Rhizosphere	LKRQKKKGGKLVKLAKIAISPAVGKGLAESEVAFT
Ga0265351_10058922	3300028020	Soil	TIRKRLKGQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFANP
Ga0265357_10365032	3300028023	Rhizosphere	LKRQKKKGGKLLVDLVKLVEIAISPVLRKGLAEFEVAFTIQ
Ga0073994_100027681	3300030991	Soil	NKKGGKLPVDLVKLAKIAISPVLGKGLAEFEVAFPNP
Ga0310686_1079588062	3300031708	Soil	MRLKRQRKKGGKLLVDLVKLAKIAISPVLGRGLAEFEGPF
Ga0307476_111887891	3300031715	Hardwood Forest Soil	LKRQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFE
Ga0307474_100781533	3300031718	Hardwood Forest Soil	LKRQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFTNPVADLL
Ga0307474_107966141	3300031718	Hardwood Forest Soil	RTIRKRLKRQKKKGGKLLVDLVKLVEIAISPVLRKKGLAAFEVAFTNPVPHLL
Ga0307474_108291121	3300031718	Hardwood Forest Soil	LKRQKKKGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFANP
Ga0307469_105610452	3300031720	Hardwood Forest Soil	LKRQMKKGGKLLVDLVKLAEIAISPVLGKGLAEFEVAFTNPVPHLL
Ga0307475_101697413	3300031754	Hardwood Forest Soil	LKRQKKKGGKLLVDLVKLVEIAISPVLKKKGLAEFEEAFTNPVAHLL
Ga0307473_102960022	3300031820	Hardwood Forest Soil	LKRQKKKGGKLLVDLVKLAEIAISPVLGKGLAEFEVAFTNPVPHLL
Ga0307473_105784442	3300031820	Hardwood Forest Soil	KGGKQPVDLVKLVEIAISPVLGKGLAEFEEAFTNPVVHLL
Ga0307479_102950853	3300031962	Hardwood Forest Soil	LKGQKKKGPKVLVNFVKLAKIAISPVLGKAEAEFEVGFYDPLIFRPIQV
Ga0307479_105763772	3300031962	Hardwood Forest Soil	MKKGGKLLVDLVKLAEIAISPVLGKGLAEFEVAFTNPVAPLL
Ga0307479_107056562	3300031962	Hardwood Forest Soil	SKRLKRQKKKGGKLLVDLVKLVEIAISPILRKGLAEFEEAFTNPAAHL
Ga0307479_115270291	3300031962	Hardwood Forest Soil	MKRQKKTGGKLLVDLVKLAKIAISPVLGKGLAEFEVAFTNP
Ga0307479_116960901	3300031962	Hardwood Forest Soil	TIRKRLKRQKKKGGKLLVDLVKLVEIAISPVLRKKGLAAFEVAFTNPVAHLL
Ga0307479_121024241	3300031962	Hardwood Forest Soil	MKNGGKLFVDLVKLAEIAISPVLGKGLAEFEVAFTNPIAPLL
Ga0307470_100409373	3300032174	Hardwood Forest Soil	LKRQKKKGGNLLVDLVKLVEIAISPVLGNGVAEFEEAFTNPVAHLL
Ga0307471_1023989292	3300032180	Hardwood Forest Soil	LKRQKKKGGKLLVDLVKLVEIAISPVLRKDLAEFEEAFTNPVAHLL
Ga0307471_1034771052	3300032180	Hardwood Forest Soil	RKKGGKLLADLVKLAKIAISPVPGKGPAEFEVAFTNP
Ga0307471_1038103491	3300032180	Hardwood Forest Soil	LKRQKKKGEKLLVDLVKLAEIAISPVFGKGLAEFEVAFTNP
Ga0307472_1004205573	3300032205	Hardwood Forest Soil	KLLVDLVKLAEIAISPVLGKGLAEFEVAFTNSVAHLR
Ga0307472_1008569491	3300032205	Hardwood Forest Soil	MKKGGKLLVDLVKLAEIAISPVLGKGLAEFEVAFTN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092578

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences