Metagenome Family F092601

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092601
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	73 residues
Representative Sequence	METVELSQQQTARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRVTAATIAARRRLAAVARRRLTN
Number of Associated Samples	81
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.57 %
% of genes near scaffold ends (potentially truncated)	27.10 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.327 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (47.664 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.617 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.49% β-sheet: 18.37% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.4.1.2: DNA/RNA non-specific endonuclease	d4e3ya_	4e3y	0.60164
d.4.1.2: DNA/RNA non-specific endonuclease	d1zm8a_	1zm8	0.59989
c.76.1.2: Arylsulfatase	d1hdha_	1hdh	0.59611
d.32.1.5: Hypothetical protein YecM (EC4020)	d1k4na1	1k4n	0.57471
d.17.4.2: NTF2-like	d1jkgb1	1jkg	0.57356

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF10057	MpsC	20.56
PF12680	SnoaL_2	1.87
PF13185	GAF_2	1.87
PF01070	FMN_dh	0.93
PF13518	HTH_28	0.93
PF02800	Gp_dh_C	0.93
PF07110	EthD	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	0.93
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.93
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.33 %
Unclassified	root	N/A	4.67 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	91.59 %
Unclassified	root	N/A	4.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	91.59 %
Unclassified	root	N/A	4.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	85.98 %
Unclassified	root	N/A	4.67 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	85.98 %
Unclassified	root	N/A	4.67 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	85.98 %
Unclassified	root	N/A	4.67 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10119667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1409	Open in IMG/M
3300004092\|Ga0062389_104749844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300005174\|Ga0066680_10086084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1902	Open in IMG/M
3300005174\|Ga0066680_10917892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300005175\|Ga0066673_10292858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300005179\|Ga0066684_10080020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1956	Open in IMG/M
3300005179\|Ga0066684_10150506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1475	Open in IMG/M
3300005180\|Ga0066685_10315850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1083	Open in IMG/M
3300005181\|Ga0066678_10304964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1043	Open in IMG/M
3300005181\|Ga0066678_10660426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300005184\|Ga0066671_10934849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300005186\|Ga0066676_10160839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1419	Open in IMG/M
3300005434\|Ga0070709_10374576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1057	Open in IMG/M
3300005434\|Ga0070709_11351997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300005435\|Ga0070714_101185270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300005436\|Ga0070713_102107692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300005437\|Ga0070710_10595153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	769	Open in IMG/M
3300005439\|Ga0070711_100458361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1045	Open in IMG/M
3300005451\|Ga0066681_10166503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1304	Open in IMG/M
3300005518\|Ga0070699_102219444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300005554\|Ga0066661_10478675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	756	Open in IMG/M
3300005557\|Ga0066704_10489911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	811	Open in IMG/M
3300005559\|Ga0066700_10672960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300005560\|Ga0066670_10077301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1806	Open in IMG/M
3300005560\|Ga0066670_10498371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300005569\|Ga0066705_10147018	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300005576\|Ga0066708_10316403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1000	Open in IMG/M
3300005586\|Ga0066691_10566579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300005587\|Ga0066654_10366533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	784	Open in IMG/M
3300006034\|Ga0066656_10344580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	963	Open in IMG/M
3300006059\|Ga0075017_100491608	Not Available	930	Open in IMG/M
3300006102\|Ga0075015_100368827	Not Available	804	Open in IMG/M
3300006173\|Ga0070716_100449967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	938	Open in IMG/M
3300006175\|Ga0070712_100737876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300006796\|Ga0066665_10540924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	949	Open in IMG/M
3300006796\|Ga0066665_11412405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300006800\|Ga0066660_10908004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300006854\|Ga0075425_100321047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1783	Open in IMG/M
3300006903\|Ga0075426_10465136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M
3300009012\|Ga0066710_100177479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3004	Open in IMG/M
3300009012\|Ga0066710_100466663	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300009012\|Ga0066710_100915998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1350	Open in IMG/M
3300009012\|Ga0066710_101376708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	1094	Open in IMG/M
3300009012\|Ga0066710_104016531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300009012\|Ga0066710_104356475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300009137\|Ga0066709_103374745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300009137\|Ga0066709_103571052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300009137\|Ga0066709_104151081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300010303\|Ga0134082_10327609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300010321\|Ga0134067_10243004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	676	Open in IMG/M
3300010321\|Ga0134067_10463400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300010322\|Ga0134084_10335198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300010335\|Ga0134063_10364643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300010343\|Ga0074044_11128118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300010379\|Ga0136449_100332685	All Organisms → cellular organisms → Bacteria	2743	Open in IMG/M
3300011120\|Ga0150983_12286451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300011120\|Ga0150983_12945266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300012200\|Ga0137382_10520438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	846	Open in IMG/M
3300012201\|Ga0137365_10778291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300012203\|Ga0137399_10049516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3041	Open in IMG/M
3300012203\|Ga0137399_10445824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1083	Open in IMG/M
3300012208\|Ga0137376_10460152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1104	Open in IMG/M
3300012208\|Ga0137376_10652079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	909	Open in IMG/M
3300012210\|Ga0137378_11564803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300012211\|Ga0137377_10293313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1560	Open in IMG/M
3300012211\|Ga0137377_10388518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1333	Open in IMG/M
3300012211\|Ga0137377_11655530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300012285\|Ga0137370_10286229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	982	Open in IMG/M
3300012285\|Ga0137370_11035833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300012918\|Ga0137396_10315586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1156	Open in IMG/M
3300012957\|Ga0164303_11540047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300012961\|Ga0164302_11137128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300012961\|Ga0164302_11585363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300012989\|Ga0164305_10987268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300012989\|Ga0164305_11626712	Not Available	577	Open in IMG/M
3300013297\|Ga0157378_11067388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300014166\|Ga0134079_10460838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300015357\|Ga0134072_10033633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1352	Open in IMG/M
3300015371\|Ga0132258_10739220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2478	Open in IMG/M
3300018057\|Ga0187858_10690808	Not Available	610	Open in IMG/M
3300018433\|Ga0066667_10055740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2414	Open in IMG/M
3300018433\|Ga0066667_10167868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1572	Open in IMG/M
3300018468\|Ga0066662_10254370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1439	Open in IMG/M
3300018468\|Ga0066662_11593237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	681	Open in IMG/M
3300018482\|Ga0066669_10164001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1653	Open in IMG/M
3300025905\|Ga0207685_10808349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300025906\|Ga0207699_10257633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1205	Open in IMG/M
3300025906\|Ga0207699_10346745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1047	Open in IMG/M
3300025915\|Ga0207693_11169369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300025922\|Ga0207646_10390932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1256	Open in IMG/M
3300025928\|Ga0207700_10539032	Not Available	1035	Open in IMG/M
3300025929\|Ga0207664_10467414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1127	Open in IMG/M
3300025939\|Ga0207665_10214580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1407	Open in IMG/M
3300026277\|Ga0209350_1038711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1403	Open in IMG/M
3300026300\|Ga0209027_1110513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	972	Open in IMG/M
3300026330\|Ga0209473_1173560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300026527\|Ga0209059_1330613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300026530\|Ga0209807_1284450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300026550\|Ga0209474_10074290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2351	Open in IMG/M
3300026550\|Ga0209474_10204803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1254	Open in IMG/M
3300027633\|Ga0208988_1073758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300028047\|Ga0209526_10115555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1886	Open in IMG/M
3300028536\|Ga0137415_10036986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4790	Open in IMG/M
3300028884\|Ga0307308_10564116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300032160\|Ga0311301_10305311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2543	Open in IMG/M
3300032180\|Ga0307471_102145821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300032205\|Ga0307472_101529774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.52%
Aquatic	Environmental → Aquatic	3.74%
Plants	Host-Associated → Plants	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Sediment	Environmental → Aquatic → Sediment	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.09%
Loam	Environmental → Terrestrial → Soil → Loam	21.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	41.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	14.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.02%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101196676	3300001661	Forest Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQHNGRVIAATIAARRQLAAVAGQRLTN*
Ga0062389_1047498441	3300004092	Bog Forest Soil	METVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQIIRIQQNGRLTPATIGAKRRLATA
Ga0066680_100860843	3300005174	Soil	METVELSQQQSARMAELPEDHRVVGVDHTAPLVRKPTGQIIPIQQNGRLTVATIAARPRLAAASPISD*
Ga0066680_109178921	3300005174	Soil	METVELSEQQRARIAEMLEGHRVVGVERRTPLVRKPTGQIIRIQQNGRLTAATIAARRRLVTASSVNDHQRGDASWHESS*
Ga0066673_102928583	3300005175	Soil	VETVELSQQQSARIAELPEDYRVVGVDHSATVVRKPTGQILCIQQNGRLTAATIAARRRLATTSPLGD*
Ga0066684_100800202	3300005179	Soil	MEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIGQNGRLTAATDAARRRVAAASPTSD*
Ga0066684_101505063	3300005179	Soil	METVELSRQQSARMADLPEDYRVVGAERRTPLVRKPSGQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA*
Ga0066685_103158503	3300005180	Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAVARQRTANCRGDVSWHESS*
Ga0066678_103049642	3300005181	Soil	METVELSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIGQNGRLTAATDAARRRVAAASPTSD*
Ga0066678_106604263	3300005181	Soil	SQHQSARMAELPETYRVVGVERRTPLVRKPTGQIIRIQQNGRLTAATITARRRLAATTRQRLTN*
Ga0066671_109348491	3300005184	Soil	MQTVELGQQQSARMADLPEDCRVVGAERRTPLVRQPSGQIIRIQQSGRMTAAATAARRRLAAVTRQRIAN*
Ga0066676_101608392	3300005186	Soil	MEVVELSQQQSARMAELPEDYRVVGVDHRTPLVRKPSGQIMRIQQNGRLIVPTIEARRRLVTTASPASD*
Ga0070709_103745764	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPSGQIIRIQQNGRMTAATIADRRRLAAVARRRTATTKETPDGTNHRDA*
Ga0070709_113519971	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VETVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQILRIQQNGRLTAATIAATRRLATTSPLGD*
Ga0070714_1011852702	3300005435	Agricultural Soil	METVELSQQQSIRMAELPEDYRVIGVERSAPLVRKPGGQIIRIQQNGRLSAATVAARNRLASPSPVSDWRGDASWHE*
Ga0070713_1021076921	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ETVELSQQQSARMAELPEDYRVVGVERRTPLVRKSTGQIIRIQQNGRMTAATIAARRKLAAAARQRTANYEGDASWHESS*
Ga0070710_105951531	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQILRIQQNGRLTAATIAATRRLATTSPLGD*
Ga0070711_1004583614	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSARVAELPEDYRVVGVDHSALLVRKPTGQILRIQQNGRLTAATIAATRRLATTSPLGD*
Ga0066681_101665031	3300005451	Soil	METVELSHQQSARMAELPEDYRVVGVEHSAPLVRKPSGQIIRIQQNGRLTAATVAAKRRLATASPSD*
Ga0070699_1022194442	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	APERCSAPTNDQKEHMETVELSQQQSARMAELPEDHRVVGVDHTAPLVRKPTGQIIPIQQNGRLTVATIAARPRLAAASPISD*
Ga0066661_104786751	3300005554	Soil	MDTVELSPQQSARLAALPEDYRVVGVDHSAPLVRKPTRQIIRIQQNGRLTAATIAAGPRVAAASLISD*
Ga0066704_104899112	3300005557	Soil	MDTVELSPQQSARLAALPEDYRVVGVDHSAPLVRKPTRQIIGIQQNGRLTAATIAAGPRVAAASLISD*
Ga0066700_106729603	3300005559	Soil	METVELSQHQSARMAGLPEDYRVVGVEHRTPLVRKPTGQIIRIQQNGRLTAATITARRRLAATTRQRLTN*
Ga0066670_100773014	3300005560	Soil	VLQTTSRGEQMETVELSRQQSARMADLPEDYRVVGAERRTPLVRKPSGQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA*
Ga0066670_104983713	3300005560	Soil	MEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIEQNGRLTAATDAARRRVAAASPTSD*
Ga0066705_101470183	3300005569	Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAAARQRTANYEGDVSWHESS*
Ga0066708_103164032	3300005576	Soil	METVELSEQQRARMAELPEDYRVVGVEHSAPLVRKPSGQIIRIQQNGRLTAATVAA
Ga0066691_105665791	3300005586	Soil	METVELSQQQSVRMAELPEDYRVVGVERRTPLVRKPSGQIIRIQQNGRMTAATIAARRKLAAAARQRTANYEGDVSWHESS*
Ga0066654_103665332	3300005587	Soil	MEAVKLSQQQSARMAELPEDYRVVGVERRTPLVRKPSGQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA*
Ga0066656_103445804	3300006034	Soil	METVELSRQQSACMAELPEYYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAVARQRTTNCRGDVSWHESS*
Ga0075017_1004916081	3300006059	Watersheds	VEAVELSRQQSLRIADLPEDYLVVGVHGRAPLVREPTGQVLRIQPDGRLTGAKIAVKRSLTAGVRPTMPYTSV
Ga0075015_1003688271	3300006102	Watersheds	VEAVELSRQQSLRIAELPEDYLVVGVHGRAPLVREPTGRVLRIQPDGRLTGAK
Ga0070716_1004499672	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAVARQRTANCGGDVSWHESS*
Ga0070712_1007378762	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSIRMAELPEDYRVIGVERSAPLVRKPGGQIIRIQQNGRLSAAAVAARNRLASPSPVSDWRGDASWHE*
Ga0066665_105409243	3300006796	Soil	METVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQIICIQQNGRLTAATIAARRRLAAASSISD*
Ga0066665_114124053	3300006796	Soil	NECGVEVETVELSQQQSARMAELPEDYGVVGVERRTPLVRKPSGQIIRIQQNGRMTAATIAARRKLAAAARQRTANYEGDVSWHESS*
Ga0066660_109080042	3300006800	Soil	METVELSQHQSARMAGLPEDYRVVGVEHRTPLVRKPTGQIIRIQQNGRLTAATITARRRLAAT
Ga0075425_1003210476	3300006854	Populus Rhizosphere	AELPEDDRVVAVERRTPLVSKPSGQIICIQQSGRMAAATTCCRARAGRAALPRIAYYEGDVSWHESS*
Ga0075426_104651363	3300006903	Populus Rhizosphere	METVELSGQRSAWMAELPEDDRVVAVERRTPLVSKPSGQIICIQQSGRMAAATTCCRARAGRAALPRIAYYEGDVSWHESS*
Ga0066710_1001774792	3300009012	Grasslands Soil	LEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIEQNGRLTAATDAARRRVAAASPTSD
Ga0066710_1004666633	3300009012	Grasslands Soil	METVELSEQQRARIAEMLEGHRVVGVERRTPLVRKPTGQIIRIQQNGRLTAATIAARRRLVTASSVNDHQRGDASWHESS
Ga0066710_1009159985	3300009012	Grasslands Soil	MEAVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQIICIQQNGRLTAATIAARRRLAAASSISD
Ga0066710_1013767082	3300009012	Grasslands Soil	MEAVELSQHQSARMAELPEDYRAVGVERRTPLVRKPTGQIIRIQQNGRVTAATMAARRRLAAITRQRRNN
Ga0066710_1040165311	3300009012	Grasslands Soil	METVELSEQQSARMAELPEDYRVVGVERRAPLVRKPTGEIIRIQQNGRLTAATIVARRTLATASPVPHVPTTPGH
Ga0066710_1043564751	3300009012	Grasslands Soil	MVTVELSQQQSARMAELPEDYRVVGVDHSTPLVRKPSGQIMSIQQNGRLIAATIAARRRLVTTASPASD
Ga0066709_1033747453	3300009137	Grasslands Soil	MEVVELSQQQSARMAELPEDYRVVGVDHRTPLVRKPSGQIMRIQQNGRLIVPTIEARRRLVATALPARD*
Ga0066709_1035710523	3300009137	Grasslands Soil	ARRAGLPEDYRVVGVEHRTPLVRKPTGQIIRIQQNGRLTAATITARRRLAATTRQRLTN*
Ga0066709_1041510813	3300009137	Grasslands Soil	METVELSRQQSARMAELPEDYRVVGVERRAPVVRKPSGQIIRIRQDGRLMAATIAATRGLAAVARERLTS*
Ga0134082_103276091	3300010303	Grasslands Soil	METVELSQQQRARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAVARQRTANCRGDVSWHESS*
Ga0134067_102430041	3300010321	Grasslands Soil	METVELSRQQRARMADLPEDYRVVGAERRTPLVRKPSGQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA*
Ga0134067_104634001	3300010321	Grasslands Soil	VELSQHQSARMAGLPEDYRVVGVEHRTPLVRKPTGQIIRIQQNGRLTAATDAARRRVAAASPTSD*
Ga0134084_103351983	3300010322	Grasslands Soil	DRVRRVQMEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIEQNGRLTAATDAARRRVAAASPTSD*
Ga0134063_103646431	3300010335	Grasslands Soil	METVELSRQQSACMAELPEDYRVVGVERRTPLVRKPSGQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA*
Ga0074044_111281181	3300010343	Bog Forest Soil	LETIRLTDQQSLRIAELPEDYWVIGVDSRAPTVCKPTGQLLRIQQNGRLTAATADARRRLANRHAHAGPSVEERG*
Ga0136449_1003326856	3300010379	Peatlands Soil	METVELSQQQSARMAELPEDYRVVGVDHCAPLVRKPTGQIVRIQQNGRLTAATSTAGRRLASASPVSDARKGDVSWHESS*
Ga0150983_122864511	3300011120	Forest Soil	SAPTDAQGEQMEAVELSQQQSARMAELPEDYHVVGVDRSAPLVRKPTGQIIRIEQNGRLTAAAIAARPRLAAASSISG*
Ga0150983_129452661	3300011120	Forest Soil	VETVELSRQQSARIAELPQDYRVVGVYRRAPLVRKPTGQIIRILPNGRLTAATIAARRRLTAASHVNDY*
Ga0137382_105204382	3300012200	Vadose Zone Soil	METVELSQQQSLRIAELPEDYRVVGVDGRAPLVRKPTGQILRIQKNGGLIAATIAAKRRLADRRADRAGHLVASS*
Ga0137365_107782911	3300012201	Vadose Zone Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRRLAAIARQRTANCRGDVSWHESS*
Ga0137399_100495166	3300012203	Vadose Zone Soil	METVELSQQQTARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRVTAATIAARRRLAAVARRRLTN*
Ga0137399_104458243	3300012203	Vadose Zone Soil	METLKLSRQQSARIAELPEDYRVVGVDHSVPLVRKPSGQIMSVQQNGRLIVATIAAKRRPVATVSPARD*
Ga0137376_104601523	3300012208	Vadose Zone Soil	ELPEGYRIIGVDRRAPLVRKPTGQILRIQHNGRLSAATAADKRRLAVPATTLYASVWG*
Ga0137376_106520791	3300012208	Vadose Zone Soil	METVELSQRQSARMAELPEDDRVVGVERRTPLVRKPSGQIIRIQQHGRMTVATTAARRRPAAVARQRIANYEGEA*
Ga0137378_115648032	3300012210	Vadose Zone Soil	METVELSQQQSARLAALPEDYRVVGVDHSAPLVRKPTGQIIRIQQNGRVTAATIAARPWVAAASLISD*
Ga0137377_102933134	3300012211	Vadose Zone Soil	METVELSQQQSARMAELPENYRVVGVERSAPLLRKPSGQIIRIQQNGRLTAATIAARPGWPPPTSD*
Ga0137377_103885183	3300012211	Vadose Zone Soil	MEAVELSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIEQNGRLTAATDAARRRVAAASPTSD*
Ga0137377_116555302	3300012211	Vadose Zone Soil	METVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQILRIQQNGRLTAATIAARRRLATTSPLGD*
Ga0137370_102862293	3300012285	Vadose Zone Soil	METVELSRQQSACMAELPEYYRVVGVERRTPLVRKPSGQIIRIQQNGRMAAATTAVRRRAGAVARQRIANY*
Ga0137370_110358332	3300012285	Vadose Zone Soil	VETVELSQQQSARIAELPEDYRVVGVDHSAPVVRKPTGQILCIQQNGRLTAATIAARRRLAT
Ga0137396_103155861	3300012918	Vadose Zone Soil	METVELSQQQTARMAELPEDYRVVGVERSTPLVRKPTGQIIRIQQNGRLTAATIAARRRLAAIAHQRLTN*
Ga0164303_115400471	3300012957	Soil	METVELSREQSARMAALPEDYRIVGVEHGTPLVRKPSGQIIRIQQNGCMTAATTAARRRPAAVARQRIANYEGEA*
Ga0164302_111371281	3300012961	Soil	RPQSARMDELPEDCRVGGVERRTPLVRKPGGQITRIQQNGPMTATTAARRRRAAAARRRIANYEGDA*
Ga0164302_115853631	3300012961	Soil	METVELSRQQSARMAELPEDYRVVGVERRTALVREPSGQIIRIQQNGRMTVATTTARRRPAAVARQRIDNYEGEARWHESS*
Ga0164305_109872682	3300012989	Soil	MESVKLSQQQRLRIAELPEDYQVIGVDRRAPLVRKPNGQILRIQENGRLMAASTGDKSRLAVPSATLYASVWA*
Ga0164305_116267122	3300012989	Soil	METVELSRPQSARMDELPEDCRVVGVERRTPLVRKPGGQITRIQQNGPMTATTAARRRRAAVARRRIAN
Ga0157378_110673882	3300013297	Miscanthus Rhizosphere	METVELSRQQSACMAELPEDYRVVAVERRTPLVRKPQRADIRIQQDGRLTAATTAVRRRAGRRRTSANC*
Ga0134079_104608381	3300014166	Grasslands Soil	SRQQSACMAELPEDYRVVGVERRTPLVREPSGQIIRIQQNGRMAAATTAVRRRAGAVARQRIANY*
Ga0134072_100336334	3300015357	Grasslands Soil	METVELSRQQSARMADLPEDYRVVGAERRTPLVRKPSGQIIRIQQNGRMAAATTAVRRRAGAVARQRIANY*
Ga0132258_107392202	3300015371	Arabidopsis Rhizosphere	METVELSEDQWRRIEELPEDYQVVGVDRSAPLVRKPTGQVLRVQQNGRLSAATAADKRRLAVPATTLYASAWG*
Ga0187858_106908081	3300018057	Peatland	METLRLTDQQSLRIAELPEDYRVVGVDGSASLVRKPTGQILRIQQNVRLIAATISAKRRLGGVLATTPYTRVLG
Ga0066667_100557403	3300018433	Grasslands Soil	MEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIEQNGRLTAATDAARRRVAAASPTSD
Ga0066667_101678686	3300018433	Grasslands Soil	SRNGGVLQTTSRGEQMETVELSRQQSARMADLPEDYRVVGAERRTPLVRKPSVQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA
Ga0066662_102543701	3300018468	Grasslands Soil	MEAVELSQQQSARMAELPEDYLVVGVDRGAPLVRKPSGQIVRVHRNGRLAAATIAGRGGPASVSSASN
Ga0066662_115932371	3300018468	Grasslands Soil	RMAELPEDYGVVGVERRTPLVRKPSGQIIRIQQNGRMTAATIAARRKLAAAARQRTANYEGDVSWHESS
Ga0066669_101640014	3300018482	Grasslands Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMPAATIAATRKLAAVARQRTANCRGDVSWHESS
Ga0207685_108083492	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TEQQSARMAELPEDYRVVGVERRTPLVRKPSGQIIRIQQNGRLSAATVAARNRLASPSPVSDWRGDASWHE
Ga0207699_102576333	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VETVELSQQQSARMAELPEDYRVVGVDHSAPLVRKPTGQILRIQQNGRLTAATIAATRRLATTSPLGD
Ga0207699_103467451	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ETVELTEQQSARMAELPEDYRVVGVERRTPLVRKPSGQIIRIQQNGRMTAATIADRRRLAAVARRRTATTKETPDGTNHRDA
Ga0207693_111693692	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSIRMAELPEDYRVIGVERSAPLVRKPGGQIIRIQQNGRLSAAAVAARNRLASPSPVSDWRGDASWHE
Ga0207646_103909323	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSARMAELPEDHRVVGVDHTAPLVRKPTGQIIPIQQNGRLTVATIAARPRLAAASPISD
Ga0207700_105390323	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VETVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAAARQRTANYEGDASWHESS
Ga0207664_104674142	3300025929	Agricultural Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAAKRKLAAVARQRTANCGGDVSWHESS
Ga0207665_102145803	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAAVARQRTANCGGDVSWHESS
Ga0209350_10387113	3300026277	Grasslands Soil	METVELSQHQSARMAGLPEDYRVVGVEHRTPLVRKPTGQIIRIQQNGRLTAATITARRRLAATTRQRLTN
Ga0209027_11105132	3300026300	Grasslands Soil	METVELSQRQSARMAELPEDYRVVGVERRTPLVRKPSGQIIRIQQHGRMTVATTAARRRPAAVARQRIANYEGEA
Ga0209473_11735601	3300026330	Soil	LEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIGQNGRLTAATDAARRRVAAASPTSD
Ga0209059_13306131	3300026527	Soil	METVELSQHQSARMAGLPEDYRVVGVEHRTPLVRKPTGQIIRIQQNGRLTAATDAARRRVAAASPTSD
Ga0209807_12844501	3300026530	Soil	METVELSQQQSARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRMTAATIAARRKLAA
Ga0209474_100742902	3300026550	Soil	MEAVKLSQQQSARMAELPDDYRVVGVLHRAPLVRKPTGQIIRIGQNGRLTAATDAARRRVAAASPTSD
Ga0209474_102048031	3300026550	Soil	LQTTSRGEQMETVELSRQQSAPMADLPEDYRVVGAERRTPLVRKPSGQIIRIKQNGRMTAATTVARRRLAAVARQRIASNEGDA
Ga0208988_10737582	3300027633	Forest Soil	METVELSQQQSLRIDELPDDFRVVGVDGKAPLVRKPTGQILRIQKNGGLIAATIVAKGRLADRRADQAGHLVASS
Ga0209526_101155554	3300028047	Forest Soil	METVELSQQQSARMAEPPEDYRVVGAERRTSLVRKPTGQIIRIQQNGRVTAATIAAWHRPAAVAHQRLTN
Ga0137415_1003698612	3300028536	Vadose Zone Soil	METVELSQQQTARMAELPEDYRVVGVERRTPLVRKPTGQIIRIQQNGRVTAATIAARRRLAAVARRRLTN
Ga0307308_105641161	3300028884	Soil	METVELSQQQSARMAELPEDYRVVGVERRTPPVRKPTGQIIRIQQHGRMTAATIAARRKLAAVARQRTANCGGDVSWHESS
Ga0311301_103053112	3300032160	Peatlands Soil	METVELSQQQSARMAELPEDYRVVGVDHCAPLVRKPTGQIVRIQQNGRLTAATSTAGRRLASASPVSDARKGDVSWHESS
Ga0307471_1021458211	3300032180	Hardwood Forest Soil	METVELTEQQSARMAELPEDYRVVGVERRTPLVRKPSGQIIRIQQNGRMTAATIADRRRLAAVARRRTATTKETPDGTNHRDA
Ga0307472_1015297742	3300032205	Hardwood Forest Soil	VETVELSQQQSARMAELPEDYRVVGIDHGAPLVRKPTGQILCIQQNGCLTAATIAARRRLATTSPLGDYQGAASWHESS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092601

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences