Metagenome Family F092647

Basic Information
Family ID	F092647
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	70 residues
Representative Sequence	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Number of Associated Samples	88
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.22 %
% of genes near scaffold ends (potentially truncated)	26.17 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Most Common Taxonomy
Group	Unclassified (68.224 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.888 % of family members)
Environment Ontology (ENVO)	Unclassified (25.234 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.533 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03401	TctC	6.54
PF01068	DNA_ligase_A_M	2.80
PF11306	DUF3108	2.80
PF02586	SRAP	1.87
PF02321	OEP	1.87
PF00816	Histone_HNS	1.87
PF13606	Ank_3	0.93
PF13701	DDE_Tnp_1_4	0.93
PF04392	ABC_sub_bind	0.93
PF07104	DUF1366	0.93
PF12770	CHAT	0.93
PF13751	DDE_Tnp_1_6	0.93
PF11578	DUF3237	0.93
PF00903	Glyoxalase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	6.54
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	3.74
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.80
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.80
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.87
COG2916	DNA-binding protein H-NS	Transcription [K]	1.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
All Organisms	root	All Organisms	31.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
cellular organisms	root	All Organisms → cellular organisms	31.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.17 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.48 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.67 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	0.93 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.74 %
Amphritea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea	0.93 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.93 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.93 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.93 %
Amphritea balenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea → Amphritea balenae	0.93 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0924450	Not Available	825	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101982933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1764	Open in IMG/M
3300000956\|JGI10216J12902_104023249	Not Available	1087	Open in IMG/M
3300000956\|JGI10216J12902_115323210	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300000956\|JGI10216J12902_115799664	Not Available	593	Open in IMG/M
3300000956\|JGI10216J12902_119443149	Not Available	1446	Open in IMG/M
3300002245\|JGIcombinedJ26739_100098401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2737	Open in IMG/M
3300003911\|JGI25405J52794_10155226	Not Available	523	Open in IMG/M
3300004081\|Ga0063454_100932490	Not Available	690	Open in IMG/M
3300005093\|Ga0062594_100458190	Not Available	1059	Open in IMG/M
3300005332\|Ga0066388_105818733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	623	Open in IMG/M
3300005332\|Ga0066388_105986010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300005335\|Ga0070666_10899970	Not Available	654	Open in IMG/M
3300005339\|Ga0070660_100619763	Not Available	905	Open in IMG/M
3300005340\|Ga0070689_101301321	Not Available	655	Open in IMG/M
3300005365\|Ga0070688_101741010	Not Available	511	Open in IMG/M
3300005530\|Ga0070679_101988733	Not Available	530	Open in IMG/M
3300005562\|Ga0058697_10678763	Not Available	546	Open in IMG/M
3300005602\|Ga0070762_11181483	Not Available	529	Open in IMG/M
3300005618\|Ga0068864_100929231	Not Available	860	Open in IMG/M
3300005713\|Ga0066905_100625815	Not Available	914	Open in IMG/M
3300005713\|Ga0066905_100806616	Not Available	814	Open in IMG/M
3300005713\|Ga0066905_101226551	Not Available	671	Open in IMG/M
3300005764\|Ga0066903_101307055	Not Available	1355	Open in IMG/M
3300005764\|Ga0066903_104891788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300005842\|Ga0068858_100498124	Not Available	1177	Open in IMG/M
3300005921\|Ga0070766_10506072	Not Available	803	Open in IMG/M
3300005937\|Ga0081455_10014389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7762	Open in IMG/M
3300005937\|Ga0081455_10023400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5749	Open in IMG/M
3300006038\|Ga0075365_10353540	Not Available	1036	Open in IMG/M
3300006038\|Ga0075365_10813343	Not Available	659	Open in IMG/M
3300006046\|Ga0066652_101322372	Not Available	679	Open in IMG/M
3300006048\|Ga0075363_100657281	Not Available	631	Open in IMG/M
3300006172\|Ga0075018_10533088	Not Available	616	Open in IMG/M
3300006175\|Ga0070712_100206154	All Organisms → cellular organisms → Bacteria → Proteobacteria	1548	Open in IMG/M
3300006844\|Ga0075428_100210389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2101	Open in IMG/M
3300006844\|Ga0075428_101067904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	853	Open in IMG/M
3300006846\|Ga0075430_100322528	Not Available	1277	Open in IMG/M
3300006847\|Ga0075431_100507630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1196	Open in IMG/M
3300006853\|Ga0075420_100382580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1217	Open in IMG/M
3300006880\|Ga0075429_101337014	Not Available	624	Open in IMG/M
3300006881\|Ga0068865_100290497	Not Available	1305	Open in IMG/M
3300006969\|Ga0075419_10377617	Not Available	968	Open in IMG/M
3300009012\|Ga0066710_102737498	Not Available	701	Open in IMG/M
3300009100\|Ga0075418_10073665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3636	Open in IMG/M
3300009100\|Ga0075418_10141261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2562	Open in IMG/M
3300009100\|Ga0075418_11568176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	715	Open in IMG/M
3300009147\|Ga0114129_10702212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1300	Open in IMG/M
3300010047\|Ga0126382_10979272	Not Available	739	Open in IMG/M
3300010396\|Ga0134126_11570111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300010399\|Ga0134127_10180582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1946	Open in IMG/M
3300011000\|Ga0138513_100028791	Not Available	799	Open in IMG/M
3300011003\|Ga0138514_100049136	Not Available	848	Open in IMG/M
3300012198\|Ga0137364_10731734	Not Available	747	Open in IMG/M
3300012199\|Ga0137383_10698934	Not Available	741	Open in IMG/M
3300012200\|Ga0137382_10988060	Not Available	604	Open in IMG/M
3300012201\|Ga0137365_10534223	Not Available	861	Open in IMG/M
3300012212\|Ga0150985_108183887	Not Available	1465	Open in IMG/M
3300012469\|Ga0150984_108161971	Not Available	821	Open in IMG/M
3300012906\|Ga0157295_10056678	Not Available	953	Open in IMG/M
3300012951\|Ga0164300_11174869	Not Available	507	Open in IMG/M
3300012958\|Ga0164299_10190548	Not Available	1176	Open in IMG/M
3300012961\|Ga0164302_11841607	Not Available	512	Open in IMG/M
3300012971\|Ga0126369_12049087	Not Available	660	Open in IMG/M
3300012986\|Ga0164304_10536691	Not Available	861	Open in IMG/M
3300013306\|Ga0163162_10190878	Not Available	2176	Open in IMG/M
3300015371\|Ga0132258_10143694	All Organisms → cellular organisms → Bacteria → Proteobacteria	5714	Open in IMG/M
3300015371\|Ga0132258_10471521	Not Available	3133	Open in IMG/M
3300015371\|Ga0132258_12504812	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1291	Open in IMG/M
3300015372\|Ga0132256_100260205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea → Amphritea balenae	1807	Open in IMG/M
3300017792\|Ga0163161_11940134	Not Available	524	Open in IMG/M
3300018027\|Ga0184605_10028396	Not Available	2293	Open in IMG/M
3300018027\|Ga0184605_10416389	Not Available	597	Open in IMG/M
3300018066\|Ga0184617_1211249	Not Available	579	Open in IMG/M
3300018073\|Ga0184624_10044775	Not Available	1769	Open in IMG/M
3300018469\|Ga0190270_10229276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1596	Open in IMG/M
3300018476\|Ga0190274_10380278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1359	Open in IMG/M
3300019890\|Ga0193728_1056001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1907	Open in IMG/M
3300021178\|Ga0210408_11100511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300021479\|Ga0210410_10176130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1912	Open in IMG/M
3300025907\|Ga0207645_10223251	Not Available	1242	Open in IMG/M
3300025912\|Ga0207707_11319658	Not Available	579	Open in IMG/M
3300025916\|Ga0207663_10571327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	886	Open in IMG/M
3300025928\|Ga0207700_11977406	Not Available	510	Open in IMG/M
3300025935\|Ga0207709_11069001	Not Available	662	Open in IMG/M
3300025936\|Ga0207670_11535102	Not Available	566	Open in IMG/M
3300026023\|Ga0207677_12124168	Not Available	522	Open in IMG/M
3300026035\|Ga0207703_11977955	Not Available	559	Open in IMG/M
3300026089\|Ga0207648_11351231	Not Available	670	Open in IMG/M
3300027866\|Ga0209813_10085491	Not Available	1050	Open in IMG/M
3300027909\|Ga0209382_10110089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3220	Open in IMG/M
3300027909\|Ga0209382_10343661	Not Available	1673	Open in IMG/M
3300028380\|Ga0268265_10667772	Not Available	1001	Open in IMG/M
3300028712\|Ga0307285_10141499	Not Available	655	Open in IMG/M
3300028717\|Ga0307298_10090217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	865	Open in IMG/M
3300028717\|Ga0307298_10215051	Not Available	568	Open in IMG/M
3300028720\|Ga0307317_10235334	Not Available	619	Open in IMG/M
3300028720\|Ga0307317_10290275	Not Available	552	Open in IMG/M
3300028768\|Ga0307280_10036699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1489	Open in IMG/M
3300028819\|Ga0307296_10010774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4798	Open in IMG/M
3300028819\|Ga0307296_10368028	Not Available	785	Open in IMG/M
3300028885\|Ga0307304_10003973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4328	Open in IMG/M
3300031740\|Ga0307468_101844608	Not Available	574	Open in IMG/M
3300031847\|Ga0310907_10486074	Not Available	658	Open in IMG/M
3300031858\|Ga0310892_10652433	Not Available	718	Open in IMG/M
3300032159\|Ga0268251_10279579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	685	Open in IMG/M
3300034150\|Ga0364933_068067	Not Available	888	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.68%
Host-Associated	Host-Associated	38.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.01%
Plants	Host-Associated → Plants	38.32%
Aquatic	Environmental → Aquatic	4.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.95%
Sediment	Environmental → Aquatic → Sediment	4.67%
Roots	Host-Associated → Plants → Roots	3.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.87%
Phylloplane	Host-Associated → Plants → Phylloplane	1.87%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.45%
Loam	Environmental → Terrestrial → Soil → Loam	17.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.87%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.74%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09244501	2228664022	Soil	MHNDRDPAEKFPTPIREPKPGTFHRPAHGLGSKHAPAAAELRLSGPMTGEQKLGEGLRELPLGGKADFAPTKGGT
INPhiseqgaiiFebDRAFT_1019829334	3300000364	Soil	MHNDRDPAEKFPTPIREPKPGTFHRPAHGLGSKHAPAAAELRLSGPMTGEQKLGEGLRELPLGGKADFAPTKGGT*
JGI10216J12902_1040232492	3300000956	Soil	MHDARNAFRAPAREPKPGTFLRPAHGFGMERAPEAADLRLSGPMTGEQKLGEGLRELPLVGKAGVTRTKDTA*
JGI10216J12902_1153232102	3300000956	Soil	MNNDRDPAAKFPTPTREPKPGTFQRPAHGFRTKRAPEAAELKLSGPMTGEQKLGEGLRELPLVATRRRGRR*
JGI10216J12902_1157996642	3300000956	Soil	MRNDRDSAAKFPTPIREPKPGTFHRPAHGVGMKLVPQNATLRLSGPLTGEQKLGEGLRELPLVGNADVARTKDKA*
JGI10216J12902_1194431492	3300000956	Soil	DRDPAEKFPTPIREPKLGTFHRPAHGFGSKRASAAAELRLSGPMTGEQKLGEGLRELPLDGKADVASTKGEA*
JGIcombinedJ26739_1000984017	3300002245	Forest Soil	MHDRDPTEQFRAPAREPKPGTFHRPAHGFGMKRVREAAELRLRGPMTGEQKLGEGLRELPLVGNAGARRTKGKA*
JGI25405J52794_101552261	3300003911	Tabebuia Heterophylla Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAAELKLSGPMEGEQKLGEGARELPLGAARMKKAAXMKXKDRD*
Ga0063454_1009324902	3300004081	Soil	MRRTGLRLAEGTTMHDRDPFRPPAREPKPGTFHRPAHAFGIKHGAEAAELRLSGPMSGEQKLGEGVAELPL
Ga0062594_1004581901	3300005093	Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0066388_1058187331	3300005332	Tropical Forest Soil	MHDRDPFRAPRREPKPGIFHRPAHGFGTKPAPEAAELRLSGPMEGEQKLGEGARELPLGAARMK
Ga0066388_1059860102	3300005332	Tropical Forest Soil	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPVPEMAKLRLSGPMVGEQKLGEGTRELPLGAARMKKRHG*
Ga0070666_108999702	3300005335	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0070660_1006197632	3300005339	Corn Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS*
Ga0070689_1013013211	3300005340	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDCAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0070688_1017410101	3300005365	Switchgrass Rhizosphere	TTMHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0070679_1019887331	3300005530	Corn Rhizosphere	APTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0058697_106787631	3300005562	Agave	MVLAMHNDRDPAEKFPTPIREPKLGTFHRPAHGFGSKDAPAAAGLRLSGPTTGEQKLGEGLRELPLGGKAVVAFTKGDA*
Ga0070762_111814831	3300005602	Soil	MHDRNPTEQFRAPAREPKPGTFHRPAHGFGMKRVREAAELRLRGPMTGEQKLGEGLRELPLVGNAGARRTKGKA*
Ga0068864_1009292313	3300005618	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGSFHRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0066905_1006258153	3300005713	Tropical Forest Soil	VHDRDPFRTPRREPKPGTFHRPAHGFGTKPAPEAAELKLSGPMVGEQKLGEGARELPLGAARVKKRP*
Ga0066905_1008066162	3300005713	Tropical Forest Soil	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPGPGVAALRLSGPMVGEQKLGEGARELPLGAARMKKRP*
Ga0066905_1012265512	3300005713	Tropical Forest Soil	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPTPEAAELRLSGPMEGEQKLGEGARELPLGAARMK
Ga0066903_1013070554	3300005764	Tropical Forest Soil	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAAELRLSGPLAGEQKLGEGARELPLGAARMKKRR*
Ga0066903_1048917881	3300005764	Tropical Forest Soil	MHDRDPFRAPRREPKPGTFHRPAHGFRTKPVPETAELRLSGPMTGEQKLGEGARELPLGAAQIKNKDRD*
Ga0068858_1004981242	3300005842	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRALEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0070766_105060722	3300005921	Soil	MHDRDPTEQFRAPAREPKPGTFHRPAHGFGMKRVREAAELRLRGPMTGEQKLGEGLRELPLVGNAGAAARRAKPQGWSRQSR*
Ga0081455_1001438910	3300005937	Tabebuia Heterophylla Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAAELKLSGPMEGEQKLGEGARELPLGAARMKKAARMKKKDRD*
Ga0081455_100234005	3300005937	Tabebuia Heterophylla Rhizosphere	MHDRDPFRAPRREPKPGTFHHPAHGFGTKPVPEAAKLRLSGPMGGEQKLGEGARELPLGAARMNKGRD*
Ga0075365_103535401	3300006038	Populus Endosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAAELRLSGPRVGEQKLGEGARELPLGAARMKKK
Ga0075365_108133431	3300006038	Populus Endosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGAQELPLGAARMKKRP*
Ga0066652_1013223722	3300006046	Soil	MHNDRDPSEKFPTPIREPKLGTFHRPVHGFGAKRAPAAAELRLSGPMTGEHKLGEGLRELPLVGKADVARTKGET*
Ga0075363_1006572811	3300006048	Populus Endosphere	VMHDRDPFRAPRREPKPRTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGAQELPLGAARMKKRP*
Ga0075018_105330882	3300006172	Watersheds	MLPLAIIGRHAMHDRDPVEQFRPPAREPKAGTFHRPAHDFGMKRLPEAAELRLSGPTTAEQKLGEGLR
Ga0070712_1002061542	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTTNVPAMQNDRDPAEKFSTPVREPKPGTFHRPAHGFGSKRAPAAAELRLSGPMTGEQKLGEGLRELPLGGKPDVASTKGET*
Ga0075428_1002103894	3300006844	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKSAPEAAELRLSGPMEGEQKLGEGARELPLGAARMKKSCD*
Ga0075428_1010679041	3300006844	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGARELPLGA
Ga0075430_1003225281	3300006846	Populus Rhizosphere	AKCMTATHSAPPRREPKPGTFHRPAHGFGTKSAPEAAELRLSGPMEGEQKLGEGARELPLGAARMKKSCD*
Ga0075431_1005076302	3300006847	Populus Rhizosphere	MHDDVNPFRAPAREPKVGTFHRPAHGFGMKRVPEAGELTLSGPTTGEQKLGEGHRELPLVGKAGAPPARRRKAREA*
Ga0075420_1003825801	3300006853	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGARELPLGAAWMKKRP*
Ga0075429_1013370142	3300006880	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGARELPLGAARMKKR
Ga0068865_1002904972	3300006881	Miscanthus Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPKTREDS*
Ga0075419_103776172	3300006969	Populus Rhizosphere	MPDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGARELPLGAARMKKSCD*
Ga0066710_1027374981	3300009012	Grasslands Soil	MHNDRDPSERFPTPIREPKLGTFHRPVHGFGAKRAPAAAELRLSGPMTGEQKLGEGLRELPLVGKADVARTTGET
Ga0075418_100736654	3300009100	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKSAPEAAELRLSGPMEGEQKLGEGARELPLGAARMKKRL*
Ga0075418_101412617	3300009100	Populus Rhizosphere	MHDRDPFRAPRREPKPDTFHRPAHGFGTKPAPEAAELRSSGPMVGEQKLGEGARELPLGAARMKKKGWPRKPHSSRG*
Ga0075418_115681761	3300009100	Populus Rhizosphere	FRAPAREPKVGTFHRPAHGFGMKRVPEAGELTLSGPTTGEQKLGEGHRELPLVGKAGAPPARRRKAREA*
Ga0114129_107022121	3300009147	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGARELPLG
Ga0126382_109792721	3300010047	Tropical Forest Soil	RAKPRSLAALWDPKRAMHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAAELRLSGPMEGEQKLGEGARELPLGAARMKKSP*
Ga0134126_115701112	3300010396	Terrestrial Soil	REPKPGTFQRPAHGFGIDRALEAAEMRLSGPMTGEQKLGEGLADLPLGTLRMKPKP*
Ga0134127_101805822	3300010399	Terrestrial Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTLRMKPKP*
Ga0138513_1000287911	3300011000	Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLCGPMTGEQKLGEGLADLPLGTKAPETREDS*
Ga0138514_1000491361	3300011003	Soil	MHDRDPTEQFRAPAREPKPGTFHRPAHGFGMKRVREAAELRLRGPMTGEQKLGEGLRELPLVGNAGAAARRAKPQGWSRQSH*
Ga0137364_107317342	3300012198	Vadose Zone Soil	MHNDRDPSEKFPTPIREPKLGTFHRPVHGFGAKRAPAAAELRLSGPMTGEQKLGEGLRELPLVGKADVARTKGET*
Ga0137383_106989342	3300012199	Vadose Zone Soil	MHNDRDPSEKFPTPIREPKLGTFHRPVHGFGAKRAPAAAELRLSGPMTGEQKLGEGLRELPLVGKADVARTTGET*
Ga0137382_109880603	3300012200	Vadose Zone Soil	MHNDRDPAAKFPTPIREPKLGTFQRPAHGLGMKLVPEAAELMSDPVTSEQKLGEGLRELPLVGKA
Ga0137365_105342231	3300012201	Vadose Zone Soil	MQLGATLFLDDQWSAMHTTATPAEKFPTPIREPKPGTFHRPAHGFGSKGAPAAAELRLSGPMAGEQKLGEGLRELPLGGKADIAPAKGET*
Ga0150985_1081838871	3300012212	Avena Fatua Rhizosphere	MHDRDPFRPPAREPKPGTFHRPAHAFGIKHGAEAAELRLSGPMSGEQKLGEGVAELPLLGQATRTIESRRETELSEQK*
Ga0150984_1081619711	3300012469	Avena Fatua Rhizosphere	MHDRDPFRPPAREPKPGTFHRPAHAFGIKHGAEAAELRLSGPMSGEQKLGEGVAELPLLGQATRTIESRRETE
Ga0157295_100566782	3300012906	Soil	MHDRDPFRAPTREPKPGSFHRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS*
Ga0164300_111748692	3300012951	Soil	MHDRDTAEQFRPLAREPKAGTFHRPAHDFGMKRIPEAAELRLSGPTTGEQKLGEGLRELPLVGNAGAAARRAKPQG*
Ga0164299_101905482	3300012958	Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIARAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP*
Ga0164302_118416071	3300012961	Soil	MHDRDPFRAPTREPTPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS*
Ga0126369_120490872	3300012971	Tropical Forest Soil	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPVAEMAKLRLSGPMVGEQRLGGTRELPLGAARMKKRHG*
Ga0164304_105366912	3300012986	Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS*
Ga0163162_101908782	3300013306	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPITGEQKLGEGLADLPLGTKAPETREDS*
Ga0132258_101436944	3300015371	Arabidopsis Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPVAETAKLRLSGPMVGEQRLGEGTRELPLALPE*
Ga0132258_104715216	3300015371	Arabidopsis Rhizosphere	MHDRDPFRAPRREPKLSTFRRPAHGVGEKPAPEAARLRLIGPMTGEQKLGEGLRDLPLGGGTIGLGRVTEKP*
Ga0132258_125048122	3300015371	Arabidopsis Rhizosphere	MHDRDPFRVPRREPKPGTFHRPAHGFGTKPAPEAAELRLSGPIVGEQKLGEGARELPLGAARMKKMP*
Ga0132256_1002602053	3300015372	Arabidopsis Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPVAETAKLRLSGPMVGEQRLGEGTRELPLGAARMKKRHG*
Ga0163161_119401342	3300017792	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLCTPERSRSRAARAACTIK
Ga0184605_100283962	3300018027	Groundwater Sediment	MHDRDPFRPPAREPKPGTFHRPAHAFGIKLVAEAAELRLCGPISGEQKLGEGVAELPLVGQATRTKEQP
Ga0184605_104163892	3300018027	Groundwater Sediment	MHDDRDPFRAPAREPKPGTFHRPAHGFGTKRVPEAAELRLSGPMSGEQKLGDGLWELPLVGSERPTLGRP
Ga0184617_12112492	3300018066	Groundwater Sediment	MHDDRDPFRAPAREPKPGTFHRPAHGFGTKRVPEAAELRLSGPMSGEQKLGDGLWELP
Ga0184624_100447753	3300018073	Groundwater Sediment	MWRTGLRLTEGTTMHDRDPFRPPGREPKPGTFHRPAHAFRIKHVAEAAELRLSGPMSGEQKLGEGVAELPLVRQATRTKEQP
Ga0190270_102292762	3300018469	Soil	MHDRDPFRPPGREPKPGTFHRPAHAFGIKHVAEAAELRLSGPMSGEQKLGEGVAELPLVGQATRTKEQP
Ga0190274_103802782	3300018476	Soil	MHDRDPFRPPGREPKPGTFHRPAHAFGIKHVAEAAELRLSGPMSGEQKLGEGVAELPLVGQATRTKDQP
Ga0193728_10560012	3300019890	Soil	MHDRDPTEQFRAPAREPKPGTFHRPAHGFGMKRVREAAELRLRGPMTGEQKLGEGLRELPLVGNAGARRTKGKA
Ga0210408_111005111	3300021178	Soil	MHDRDTAEQFRPLAREPKAGTFHRPAHDFGMKRLPEAAELRLSGPTTAEQKLGEGLR
Ga0210410_101761304	3300021479	Soil	MHDRDTAEQFRPLAREPKAGTLHRPAHDFGMKRIPEAAELRLRGPTTGEQKLGEGLRELPLVGQAPPAHPKDEA
Ga0207645_102232512	3300025907	Miscanthus Rhizosphere	FRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPK
Ga0207707_113196581	3300025912	Corn Rhizosphere	LSGGSKTREPKPGTFQRQAHGFGIDLALEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Ga0207663_105713272	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RSMVPAMHNDRDPAEKFPAPIREPKLGTFHRPAHGFGSKRAPVAAELRLSGPMTGEQKLGEGLRELPLGGKADVAPTKGET
Ga0207700_119774062	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DRDPTEQFRAPAREPKPGTFHRPAHGFGMKRVREAAELRLRGPMTGEQKLGEGLRELPLVGNAGAAARRAKPQGWSRQSR
Ga0207709_110690012	3300025935	Miscanthus Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS
Ga0207670_115351021	3300025936	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDCAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Ga0207677_121241682	3300026023	Miscanthus Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLCTPARSRSRAARAACTIK
Ga0207703_119779552	3300026035	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRALEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Ga0207648_113512311	3300026089	Miscanthus Rhizosphere	MHDRDPFRAPTREPKPGTFQPPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Ga0209813_100854912	3300027866	Populus Endosphere	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Ga0209382_101100894	3300027909	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKSAPEAAELRLSGPMEGEQKLGEGARELPLGAARMKKSCD
Ga0209382_103436612	3300027909	Populus Rhizosphere	MHDRDPFRAPRREPKPGTFHRPAHGFGTKPAPEAADLRLSGPMVGEQKLGEGAQELPLGAARMKKRP
Ga0268265_106677722	3300028380	Switchgrass Rhizosphere	MHDRDPFRAPTREPKPGTFRRPAHGVGMKRVAEAAELRLSGPMTGEQKLGEGLADLPLGTKAPETREDS
Ga0307285_101414991	3300028712	Soil	MHDRDPFRAPAREPKPGTFHRPAHGVGMKRVAEAAELRLSGPMTGEQKLGEGLADLPLGTKAPETREDS
Ga0307298_100902172	3300028717	Soil	MHNDRDHAEKFRAPAREPKAGTFHRPAHGVGVKHVHAAAVVRLSGPTTGEQKLGEGRPELPLVGNASAVRTKDEA
Ga0307298_102150511	3300028717	Soil	MHDRDPFRAPTREPKPGTFHRPAHGVGMKRVAEAAELRLSGPMTGEQKLGEGLADLPLGTKAPETREDS
Ga0307317_102353342	3300028720	Soil	MWRTGLRLAEGTTMHDRDPFRPPAREPKPGTFHRPAHAFGIKLVAEAAELRLCGPISGEQKLGEGVAELPLVGQATRTKEQP
Ga0307317_102902752	3300028720	Soil	MHDDRDPFRAPAREPKPGTFHRPAHGFGTKRVPEAAELRLSGPMSGEQKLGDGLWELPL
Ga0307280_100366992	3300028768	Soil	MHDRDPFRPPAREPKPGTFHRPAHAFGIKLVAEAAELRLSGPMSGEQKLGEGVAELPLVGQATRTKEQP
Ga0307296_100107745	3300028819	Soil	MWRTGLRLAEGTTMHDRDPFRPPAREPKPGTFHRPAHAFGIKLVAEAAELRLSGPMSGEQKLGEGVAELPLVGQATRTKEQP
Ga0307296_103680281	3300028819	Soil	PWPRTPFLAESATMHDDRDPFRAPAREPKPGTFHRPAHGFGTKRVPEAAELRLSGPMSGEQKLGDGLWELPLVGSDPLTRDKA
Ga0307304_100039736	3300028885	Soil	MHDRDPFRPPAREPKPGTFHRPAHAFGIKLVAEAAELRLSGPISGEQKLGEGVAELPLVGQATRTKEQP
Ga0307468_1018446082	3300031740	Hardwood Forest Soil	MHDRDPFRAPAREPKPGTFHRPAHGFGMKRVAEAAELRLNGPMTGEQKLGEGLAELPLRAPRTKEKP
Ga0310907_104860741	3300031847	Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIDRAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS
Ga0310892_106524332	3300031858	Soil	MHDRDPFRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTPRTKPKP
Ga0268251_102795792	3300032159	Agave	MVLAMHNDRDPAEKFPTPIREPKLGTFHRPAHGFGSKDAPAAAGLRLSGPTTGEQKLGEGPREVPLGGKAVGAFTKGEA
Ga0364933_068067_1_192	3300034150	Sediment	FRAPTREPKPGTFQRPAHGFGIERAPEAAEMRLSGPMTGEQKLGEGLADLPLGTKAPETREDS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092647

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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