NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092648

Metagenome / Metatranscriptome Family F092648

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092648
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 49 residues
Representative Sequence MRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVLW
Number of Associated Samples 95
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 34.91 %
% of genes near scaffold ends (potentially truncated) 94.39 %
% of genes from short scaffolds (< 2000 bps) 89.72 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.262 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.234 % of family members)
Environment Ontology (ENVO) Unclassified
(38.318 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.336 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.81%    β-sheet: 0.00%    Coil/Unstructured: 89.19%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF04392ABC_sub_bind 1.87
PF01966HD 1.87
PF13683rve_3 1.87
PF13408Zn_ribbon_recom 0.93
PF00072Response_reg 0.93
PF13637Ank_4 0.93
PF06742DUF1214 0.93
PF00578AhpC-TSA 0.93
PF02566OsmC 0.93
PF03472Autoind_bind 0.93
PF01590GAF 0.93
PF00248Aldo_ket_red 0.93
PF12852Cupin_6 0.93
PF00239Resolvase 0.93
PF13181TPR_8 0.93
PF07298NnrU 0.93
PF02518HATPase_c 0.93
PF07690MFS_1 0.93
PF16694Cytochrome_P460 0.93
PF02899Phage_int_SAM_1 0.93
PF01527HTH_Tnp_1 0.93
PF07366SnoaL 0.93
PF00536SAM_1 0.93
PF12833HTH_18 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG2197DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domainsTranscription [K] 1.87
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.87
COG1764Organic hydroperoxide reductase OsmC/OhrADefense mechanisms [V] 0.93
COG1765Uncharacterized OsmC-related proteinGeneral function prediction only [R] 0.93
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.93
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.93
COG4094Uncharacterized membrane proteinFunction unknown [S] 0.93
COG4973Site-specific recombinase XerCReplication, recombination and repair [L] 0.93
COG4974Site-specific recombinase XerDReplication, recombination and repair [L] 0.93
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 0.93
COG5402Uncharacterized protein, contains DUF1214 domainFunction unknown [S] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.26 %
UnclassifiedrootN/A3.74 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000912|JGI12032J12867_1001917All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1138Open in IMG/M
3300001171|JGI12685J13342_100778All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3758Open in IMG/M
3300001545|JGI12630J15595_10085472All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3619Open in IMG/M
3300001545|JGI12630J15595_10093122All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3592Open in IMG/M
3300002245|JGIcombinedJ26739_101269640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3627Open in IMG/M
3300002914|JGI25617J43924_10158446All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3772Open in IMG/M
3300002954|JGI20281J44786_101508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3620Open in IMG/M
3300005575|Ga0066702_10465836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3773Open in IMG/M
3300005713|Ga0066905_101159985All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3689Open in IMG/M
3300005921|Ga0070766_10670124All Organisms → cellular organisms → Bacteria → Proteobacteria700Open in IMG/M
3300006050|Ga0075028_100200504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LSJC277A001077Open in IMG/M
3300006172|Ga0075018_10531541All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3617Open in IMG/M
3300006173|Ga0070716_100331305All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31070Open in IMG/M
3300006175|Ga0070712_101646449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3562Open in IMG/M
3300006176|Ga0070765_100437341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1224Open in IMG/M
3300006176|Ga0070765_100567057All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium pellucidum1069Open in IMG/M
3300006176|Ga0070765_101026590All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae779Open in IMG/M
3300006572|Ga0074051_11791100All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3625Open in IMG/M
3300006893|Ga0073928_11181576All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei516Open in IMG/M
3300009090|Ga0099827_11460743All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3595Open in IMG/M
3300010159|Ga0099796_10146741All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria926Open in IMG/M
3300010362|Ga0126377_12245099All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187622Open in IMG/M
3300011270|Ga0137391_10856342All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3746Open in IMG/M
3300012068|Ga0153989_1017925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3911Open in IMG/M
3300012149|Ga0153941_1030344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31001Open in IMG/M
3300012189|Ga0137388_10983148All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3779Open in IMG/M
3300012203|Ga0137399_11440694All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3575Open in IMG/M
3300012203|Ga0137399_11639209All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WYCCWR 12774531Open in IMG/M
3300012685|Ga0137397_10014238All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei5561Open in IMG/M
3300012685|Ga0137397_10160436All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S1031668Open in IMG/M
3300012685|Ga0137397_11319313All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WYCCWR 12774512Open in IMG/M
3300012925|Ga0137419_10204751All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WYCCWR 127741463Open in IMG/M
3300012927|Ga0137416_10012319All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes5181Open in IMG/M
3300012930|Ga0137407_11808720Not Available582Open in IMG/M
3300012944|Ga0137410_10337027All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WYCCWR 127741202Open in IMG/M
3300015052|Ga0137411_1118030All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3716Open in IMG/M
3300015241|Ga0137418_10152834All Organisms → cellular organisms → Bacteria2032Open in IMG/M
3300018090|Ga0187770_10456258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1008Open in IMG/M
3300019866|Ga0193756_1022486All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3879Open in IMG/M
3300019883|Ga0193725_1002312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei5528Open in IMG/M
3300020062|Ga0193724_1021458All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1374Open in IMG/M
3300020170|Ga0179594_10102901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31028Open in IMG/M
3300020199|Ga0179592_10241431All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3812Open in IMG/M
3300020199|Ga0179592_10478251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WYCCWR 12774535Open in IMG/M
3300021086|Ga0179596_10471986All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3635Open in IMG/M
3300021170|Ga0210400_10793285All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3776Open in IMG/M
3300021180|Ga0210396_10977438Not Available718Open in IMG/M
3300021362|Ga0213882_10010498All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3350Open in IMG/M
3300021405|Ga0210387_11158688All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3672Open in IMG/M
3300021407|Ga0210383_11112784All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3666Open in IMG/M
3300021420|Ga0210394_10867288All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3786Open in IMG/M
3300021559|Ga0210409_10997740All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3711Open in IMG/M
3300022756|Ga0222622_10746658All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3713Open in IMG/M
3300024288|Ga0179589_10263178All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3768Open in IMG/M
3300024330|Ga0137417_1135936All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3651Open in IMG/M
3300024330|Ga0137417_1194974All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3605Open in IMG/M
3300026340|Ga0257162_1002396All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2061Open in IMG/M
3300026351|Ga0257170_1040210All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3641Open in IMG/M
3300026358|Ga0257166_1045328All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3621Open in IMG/M
3300026359|Ga0257163_1054567All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3638Open in IMG/M
3300026360|Ga0257173_1035861All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3671Open in IMG/M
3300026361|Ga0257176_1051896All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3647Open in IMG/M
3300026369|Ga0257152_1021737All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3685Open in IMG/M
3300026371|Ga0257179_1042826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3577Open in IMG/M
3300026374|Ga0257146_1001623All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei3819Open in IMG/M
3300026374|Ga0257146_1043620All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium727Open in IMG/M
3300026377|Ga0257171_1001568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei3179Open in IMG/M
3300026377|Ga0257171_1064460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3640Open in IMG/M
3300026498|Ga0257156_1087415All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3647Open in IMG/M
3300026499|Ga0257181_1060078All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3641Open in IMG/M
3300026507|Ga0257165_1027192All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3986Open in IMG/M
3300026508|Ga0257161_1008350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1837Open in IMG/M
3300026552|Ga0209577_10792063All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3530Open in IMG/M
3300026557|Ga0179587_10301675Not Available1032Open in IMG/M
3300026557|Ga0179587_10699691All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3667Open in IMG/M
3300026557|Ga0179587_11098831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3523Open in IMG/M
3300026687|Ga0208212_101188All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3623Open in IMG/M
3300026734|Ga0208211_100656All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31054Open in IMG/M
3300027076|Ga0208860_1001599All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense1624Open in IMG/M
3300027109|Ga0208603_1057643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3586Open in IMG/M
3300027174|Ga0207948_1022303All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3749Open in IMG/M
3300027266|Ga0209215_1031732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3707Open in IMG/M
3300027502|Ga0209622_1072505All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3629Open in IMG/M
3300027546|Ga0208984_1103393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3616Open in IMG/M
3300027548|Ga0209523_1014547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1493Open in IMG/M
3300027565|Ga0209219_1079484All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3813Open in IMG/M
3300027671|Ga0209588_1041756All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N31481Open in IMG/M
3300027678|Ga0209011_1141089All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3681Open in IMG/M
3300027767|Ga0209655_10002738All Organisms → cellular organisms → Bacteria → Proteobacteria6243Open in IMG/M
3300027870|Ga0209023_10771458All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3544Open in IMG/M
3300027908|Ga0209006_11059395All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3642Open in IMG/M
3300027910|Ga0209583_10362005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3679Open in IMG/M
3300028047|Ga0209526_10584504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3717Open in IMG/M
3300028536|Ga0137415_10031883All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes5186Open in IMG/M
3300028792|Ga0307504_10255140All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3643Open in IMG/M
3300028868|Ga0302163_10161116All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3604Open in IMG/M
3300030967|Ga0075399_10018973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3580Open in IMG/M
3300031057|Ga0170834_100078897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria555Open in IMG/M
3300031128|Ga0170823_13504790All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1160Open in IMG/M
3300031446|Ga0170820_13898834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3564Open in IMG/M
3300031474|Ga0170818_101135838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WYCCWR 12774609Open in IMG/M
3300031941|Ga0310912_10350317All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1147Open in IMG/M
3300031945|Ga0310913_10594413All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3785Open in IMG/M
3300032035|Ga0310911_10900113All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3510Open in IMG/M
3300032256|Ga0315271_11196468All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3657Open in IMG/M
3300033289|Ga0310914_11290539All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi632Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil25.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.23%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil15.89%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.67%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.74%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.87%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.87%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens1.87%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.93%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.93%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.93%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.93%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.93%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.93%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000912Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3EnvironmentalOpen in IMG/M
3300001171Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1EnvironmentalOpen in IMG/M
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300002954Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012068Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC073 MetaGHost-AssociatedOpen in IMG/M
3300012149Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ025 MetaGHost-AssociatedOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019866Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300020062Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026340Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-AEnvironmentalOpen in IMG/M
3300026351Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-BEnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026369Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-AEnvironmentalOpen in IMG/M
3300026371Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-BEnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026377Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-BEnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026507Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-BEnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026687Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN413 (SPAdes)EnvironmentalOpen in IMG/M
3300026734Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes)EnvironmentalOpen in IMG/M
3300027076Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)EnvironmentalOpen in IMG/M
3300027109Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)EnvironmentalOpen in IMG/M
3300027174Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)EnvironmentalOpen in IMG/M
3300027266Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027502Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027546Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027548Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027870Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028868Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3EnvironmentalOpen in IMG/M
3300030967Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12032J12867_100191743300000912Forest SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFV
JGI12685J13342_10077813300001171Forest SoilMCCTPTLRWLIVLTXPPRYRCPLNXLPASRLLPPRSGLERSDFV
JGI12630J15595_1008547213300001545Forest SoilMILLFLIMRCTPTIRELIEATPLSLASLDRLPASRLLLPRSGLERSDFV
JGI12630J15595_1009312213300001545Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNRLPASRLLLPRSGLERSDFVLWH
JGIcombinedJ26739_10126964013300002245Forest SoilMMLLFSIMRCTPTIRELIVATPLSLSSQRLPASRLLLPRSGLERSDFVRWH
JGI25617J43924_1015844623300002914Grasslands SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVPWHQ
JGI20281J44786_10150813300002954Forest SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFV
Ga0066702_1046583623300005575SoilMMLLFLIMRCTPTIRELIAATPLSLSSQRLPASRLLLPRSGLERSDFVLW
Ga0066905_10115998523300005713Tropical Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNRLPASRLSLPRSGLERSDFVLW
Ga0070766_1067012423300005921SoilIVLTLPPRHPCPLDRLPASRLLLPRSGLERSDFVH*
Ga0075028_10020050423300006050WatershedsMILLFLIMRCTPTIRELIEATPLSLFSQLASGLSALPPRSGLERSDFVLWHETAHLGCSPFGC*
Ga0075018_1053154123300006172WatershedsMCCTPTVRLLIVLTLPPRYRCPLNRYRAPRLLLPRSGLERSDFVLWH
Ga0070716_10033130513300006173Corn, Switchgrass And Miscanthus RhizosphereMCCTPTLRWLIVLTLPPRCRCPLTGYQASRLLLPRSGLERSDFVRW
Ga0070712_10164644913300006175Corn, Switchgrass And Miscanthus RhizosphereMCCSPTLRWLIVLTLPPRYRCPLNRLPASRLLLPRSGLERSDFVP
Ga0070765_10043734143300006176SoilTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVH*
Ga0070765_10056705723300006176SoilLFLIMRCTPTIHELIVLTLPPRHRCPLDRLPASRLLLPRSGLERSDFVLWHL*
Ga0070765_10102659023300006176SoilTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVLWHV*
Ga0074051_1179110023300006572SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVHC
Ga0073928_1118157613300006893Iron-Sulfur Acid SpringRCTPTIDELIVLTLPPRHRCPLDRLLASRLLLPRSGLERSDFVRWDFTDMATCMIGVCNRITSGH*
Ga0099827_1146074313300009090Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDF
Ga0099796_1014674113300010159Vadose Zone SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVRWHL*
Ga0126377_1224509923300010362Tropical Forest SoilMRVLPRAITRCTPTVRLLIVLTLPPRYRCPLNRPPARRLLLPRSGLERS
Ga0137391_1085634213300011270Vadose Zone SoilMTLPPRHRCPLDRMPASRLLLPRSGLERSDFVPWHQ
Ga0153989_101792513300012068Attine Ant Fungus GardensMCCTPTLRWSIVLTSPPWCRCPLTGYQASRLLLPRSGLERSDFVHWPQAADGRCLPLH
Ga0153941_103034433300012149Attine Ant Fungus GardensMCCTPTLRWLIVLTLPPRCRCPLTGYQASRLLLPRSGLERSDFVHWHVTDMPKYLGNVRYWVNS
Ga0137388_1098314813300012189Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHL*
Ga0137399_1144069413300012203Vadose Zone SoilVRLSIVLTLPPRYRCPLDRLPASRLLPPRSGLERSDFVLWPQATEKDVRSNVGYG
Ga0137399_1163920913300012203Vadose Zone SoilDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHL*
Ga0137397_1001423893300012685Vadose Zone SoilTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVRWHL*
Ga0137397_1016043633300012685Vadose Zone SoilHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHKADVPAAALDVCFHG*
Ga0137397_1131931323300012685Vadose Zone SoilIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHKTDQSGRSRDVR*
Ga0137419_1020475123300012925Vadose Zone SoilPQMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHL*
Ga0137416_1001231963300012927Vadose Zone SoilTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHETDVAVAGVDVCFVG*
Ga0137407_1180872013300012930Vadose Zone SoilMMLLFLIMRCTPTIRELIAATPLSLSSQRLPASRLLLPRSGLERSDFVHWH
Ga0137410_1033702713300012944Vadose Zone SoilLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHV*
Ga0137411_111803013300015052Vadose Zone SoilMTLPPRHRCPLDRMPASRLLLPRSGLERSVERSDFVLWHQAD
Ga0137418_1015283413300015241Vadose Zone SoilIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVP*
Ga0187770_1045625823300018090Tropical PeatlandMILLFLIMRCTPTIRELIEATPLSPFSQRLPASRLLPPRSGLERSDFVLWPIARVGVARGMSEHWR
Ga0193756_102248613300019866SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVPWHKADV
Ga0193725_100231213300019883SoilHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVRWHL
Ga0193724_102145823300020062SoilHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVL
Ga0179594_1010290113300020170Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHF
Ga0179592_1024143133300020199Vadose Zone SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVPWHQTDVPGQ
Ga0179592_1047825113300020199Vadose Zone SoilPTIYDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHL
Ga0179596_1047198613300021086Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVPWHI
Ga0210400_1079328523300021170SoilMRCTPTIHELIVLTLPPRHRCPLDRLPASRLLLPRSGLERSDF
Ga0210396_1097743813300021180SoilIHELIVLTLPPRHRCPLDRPPASRLLLPRSGLERSDFVL
Ga0213882_1001049823300021362Exposed RockMILFFIMPTIRELIVATPLSLSSSSLPASRLLLPRSGLERSDFVLWSNSDLW
Ga0210387_1115868823300021405SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVHWHISDTARC
Ga0210383_1111278423300021407SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVHWHQTDHQRC
Ga0210394_1086728823300021420SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVHWHQTDQPGLSRDVSY
Ga0210409_1099774023300021559SoilMCCTPTLRWSIVLTLPPWCRCPLTGYQASRLLLPRSGLERSDFVRWRKADLR
Ga0222622_1074665813300022756Groundwater SedimentMPAGKCGWLQMILLFLIMRCTPTIRELIEATLLSLSSQSATSLSALAPRSGLERSDFVLWHFS
Ga0179589_1026317823300024288Vadose Zone SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVQWHEAEVPTG
Ga0137417_113593613300024330Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVRQRLC
Ga0137417_119497413300024330Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERS
Ga0257162_100239643300026340SoilTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVL
Ga0257170_104021013300026351SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHET
Ga0257166_104532813300026358SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLER
Ga0257163_105456713300026359SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLW
Ga0257173_103586123300026360SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGWS
Ga0257176_105189613300026361SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVPWHETDIPT
Ga0257152_102173713300026369SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHQTDMLG
Ga0257179_104282613300026371SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLP
Ga0257146_100162373300026374SoilTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVRWHL
Ga0257146_104362023300026374SoilIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVHWHETDLSV
Ga0257171_100156873300026377SoilMRCTPTIHDLIVLTLPPRQRCPLDRMPASRLLLPRSGLERSDFVLWHLSDM
Ga0257171_106446013300026377SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVRWHKAEV
Ga0257156_108741513300026498SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHFSDVT
Ga0257181_106007813300026499SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHQPD
Ga0257165_102719213300026507SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVPWRKCEVP
Ga0257161_100835013300026508SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVPWHFWDMSTA
Ga0209577_1079206313300026552SoilMMLLFLIMRCTPTIRELIAATPLSLSSQRLPASRLLLPRSGLERSDFVLWHE
Ga0179587_1030167513300026557Vadose Zone SoilIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVPWHQTDVPGQADDVCS
Ga0179587_1069969113300026557Vadose Zone SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVHWHKADMAR
Ga0179587_1109883113300026557Vadose Zone SoilMMLLFLIMRCTPTIRELIAATPLSLSSQRLPASRLLLPRSGLARRDFVRWHIASFSCCAT
Ga0208212_10118813300026687SoilMILLFLIMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDF
Ga0208211_10065613300026734SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVRWH
Ga0208860_100159943300027076Forest SoilMRCTPTIHELIVLTLPPRHPCPLDRLPASRLLLPRSGLERSDFVHWEQSGKHLLV
Ga0208603_105764313300027109Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNWLPASRLLLPRSGLERSDFVPWH
Ga0207948_102230313300027174Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNWLPASRLLLPRSGLERSDFVLW
Ga0209215_103173213300027266Forest SoilMCCTPTLRSLIVSTLPPRLFILNRLPASRLFLPRSGLE
Ga0209622_107250523300027502Forest SoilMRCPPTVRLLIVLTLPPSYRCPLDRLPASRLLLPRSALERSDFVLWHQTDIE
Ga0208984_110339313300027546Forest SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFV
Ga0209523_101454713300027548Forest SoilLLLIAHCTPTIHEPIVLTLPPRCHYPLNWLPASRLLLPRSGLERSDFVPWPEAV
Ga0209219_107948413300027565Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNRLPASRLLLPRSGLERSDFVRWHQTDLRLRSPHFCY
Ga0209588_104175613300027671Vadose Zone SoilMRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHETDVAVA
Ga0209011_114108913300027678Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNRLPASRLLLPRSGLERSDFVRWHQ
Ga0209655_1000273813300027767Bog Forest SoilELIVLTLPPRHRCPLDRLAASRLLLPRSGLERSDFVHCVGFRTPA
Ga0209023_1077145813300027870Freshwater And SedimentMRGTATIRELIEATPLSLSSLGQLPVSRFLPPRSGLERSDF
Ga0209006_1105939523300027908Forest SoilMRCTPTIHELIVLTLPPRHRCPLDRLPASRLLLPRSGLERSDFVPWPET
Ga0209583_1036200513300027910WatershedsMILLFLIMRCTPTIRELIEATPLSLASLDRLPASRLLLP
Ga0209526_1058450413300028047Forest SoilMCCTPTLRWLIVLTLPPRYRCPLNRLPASRLLLPRSGLERSDFVLWHEPDLQRC
Ga0137415_1003188363300028536Vadose Zone SoilCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFVLWHETDVAVAGVDVCFVG
Ga0307504_1025514013300028792SoilMILLFFIMRCTPIIRELIVATRYRCPLHRLPASRLLLPRSGLERSDFVLWHKAD
Ga0307281_1026930713300028803SoilMILLFLIMRCTPTIRELIEATLLSLSSQSATSLSALAPRSGLERSDFVLWHLADMQRC
Ga0302163_1016111613300028868FenMRGTATIRELIEATPLSLSSLGQLPVSRLLLPRSGLERSDF
Ga0075399_1001897323300030967SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVH
Ga0170834_10007889723300031057Forest SoilRCTPTIHELIVLTLPPRHRCPLDRLPASRLLLPRSGLERSDFVHWQEPDQPGQSRDVR
Ga0170823_1350479023300031128Forest SoilLLFLIMRCTPTIHELIVLTLPPRHPCPLNRLPVSRLLRSGLERSDFVRWV
Ga0170820_1389883423300031446Forest SoilMRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVLW
Ga0170818_10113583813300031474Forest SoilELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFVLWHVCDMPAESEYVCLSG
Ga0310912_1035031713300031941SoilMILLVLITSCTPTLRELIAATRYRCPLDRLSASRLLPPRSR
Ga0310913_1059441313300031945SoilMCCPPTVRLLIVLTLPPRYRCPLNRLPAPRLLPPRSGLERSDFVPCAGFWT
Ga0310911_1090011313300032035SoilMCCTPTERLLIVLTLPPRCRCPLDRLPASRLLPPHSGLERSDFVLWHQAAIEDVRY
Ga0315271_1119646813300032256SedimentMRGTATIRELIEATPLSLSSLGQLPVSRLLLPRSGLERSDFV
Ga0310914_1129053913300033289SoilTVRLLIVLTLPPRYRCPLNRLPAPRLVPPRSGLERSDSVH

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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