NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092750

Metagenome Family F092750

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092750
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 66 residues
Representative Sequence MKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Number of Associated Samples 75
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 19.63 %
% of genes from short scaffolds (< 2000 bps) 71.03 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.916 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(33.645 % of family members)
Environment Ontology (ENVO) Unclassified
(82.243 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.589 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 81.03%    β-sheet: 0.00%    Coil/Unstructured: 18.97%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF03118RNA_pol_A_CTD 10.28
PF10544T5orf172 1.87
PF04404ERF 1.87
PF06067DUF932 1.87
PF13884Peptidase_S74 0.93
PF12684DUF3799 0.93
PF13704Glyco_tranf_2_4 0.93
PF01510Amidase_2 0.93
PF04466Terminase_3 0.93
PF06199Phage_tail_2 0.93
PF04860Phage_portal 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunitTranscription [K] 10.28
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.92 %
All OrganismsrootAll Organisms13.08 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10120742Not Available1031Open in IMG/M
3300000116|DelMOSpr2010_c10021608All Organisms → Viruses → Predicted Viral3130Open in IMG/M
3300001354|JGI20155J14468_10002848Not Available12452Open in IMG/M
3300002930|Water_100024Not Available38915Open in IMG/M
3300004279|Ga0066605_10020079Not Available3340Open in IMG/M
3300004448|Ga0065861_1054828Not Available1675Open in IMG/M
3300004457|Ga0066224_1009042Not Available29352Open in IMG/M
3300004457|Ga0066224_1131015Not Available1876Open in IMG/M
3300004460|Ga0066222_1101496Not Available1529Open in IMG/M
3300004461|Ga0066223_1168437Not Available2369Open in IMG/M
3300006029|Ga0075466_1011950Not Available2951Open in IMG/M
3300006029|Ga0075466_1104410Not Available765Open in IMG/M
3300006164|Ga0075441_10009382All Organisms → Viruses → Predicted Viral4178Open in IMG/M
3300006191|Ga0075447_10020616Not Available2619Open in IMG/M
3300006191|Ga0075447_10033515Not Available1966Open in IMG/M
3300006802|Ga0070749_10682362Not Available550Open in IMG/M
3300006803|Ga0075467_10246633Not Available971Open in IMG/M
3300006803|Ga0075467_10608971Not Available558Open in IMG/M
3300006920|Ga0070748_1124821Not Available968Open in IMG/M
3300006947|Ga0075444_10101641Not Available1258Open in IMG/M
3300007229|Ga0075468_10044690All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aequorivita → unclassified Aequorivita → Aequorivita sp.1525Open in IMG/M
3300007231|Ga0075469_10123743Not Available715Open in IMG/M
3300007276|Ga0070747_1060243Not Available1442Open in IMG/M
3300007276|Ga0070747_1113209Not Available994Open in IMG/M
3300007538|Ga0099851_1058599Not Available1505Open in IMG/M
3300007540|Ga0099847_1000463All Organisms → cellular organisms → Bacteria13834Open in IMG/M
3300007540|Ga0099847_1012129Not Available2842Open in IMG/M
3300007552|Ga0102818_1016723Not Available1446Open in IMG/M
3300009076|Ga0115550_1035898Not Available2152Open in IMG/M
3300009076|Ga0115550_1112765Not Available990Open in IMG/M
3300009077|Ga0115552_1273443Not Available678Open in IMG/M
3300009420|Ga0114994_10955068Not Available555Open in IMG/M
3300009428|Ga0114915_1011376All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3380Open in IMG/M
3300009437|Ga0115556_1028611Not Available2507Open in IMG/M
3300009437|Ga0115556_1106061Not Available1069Open in IMG/M
3300009443|Ga0115557_1157581Not Available914Open in IMG/M
3300009495|Ga0115571_1058723Not Available1757Open in IMG/M
3300009495|Ga0115571_1254827Not Available704Open in IMG/M
3300009495|Ga0115571_1320356Not Available615Open in IMG/M
3300009496|Ga0115570_10084636Not Available1581Open in IMG/M
3300009496|Ga0115570_10252637Not Available777Open in IMG/M
3300009496|Ga0115570_10277598Not Available732Open in IMG/M
3300009505|Ga0115564_10019743Not Available4548Open in IMG/M
3300010368|Ga0129324_10347744Not Available577Open in IMG/M
3300017697|Ga0180120_10196084Not Available838Open in IMG/M
3300017742|Ga0181399_1134681Not Available599Open in IMG/M
3300017753|Ga0181407_1034900All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1347Open in IMG/M
3300017762|Ga0181422_1068951Not Available1121Open in IMG/M
3300017782|Ga0181380_1024841Not Available2217Open in IMG/M
3300017782|Ga0181380_1214507Not Available643Open in IMG/M
3300017783|Ga0181379_1003233All Organisms → cellular organisms → Bacteria7341Open in IMG/M
3300020182|Ga0206129_10169299Not Available1007Open in IMG/M
3300020187|Ga0206130_10032351Not Available4152Open in IMG/M
3300020187|Ga0206130_10293296Not Available707Open in IMG/M
3300021373|Ga0213865_10083234Not Available1728Open in IMG/M
3300021375|Ga0213869_10035449Not Available2688Open in IMG/M
3300021957|Ga0222717_10002328All Organisms → cellular organisms → Bacteria14775Open in IMG/M
3300021959|Ga0222716_10067794Not Available2484Open in IMG/M
3300022053|Ga0212030_1004946Not Available1482Open in IMG/M
3300022053|Ga0212030_1004983Not Available1477Open in IMG/M
3300022053|Ga0212030_1038111Not Available675Open in IMG/M
3300022061|Ga0212023_1000036All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.10040Open in IMG/M
3300022061|Ga0212023_1001986Not Available2116Open in IMG/M
3300022061|Ga0212023_1037647Not Available673Open in IMG/M
3300022063|Ga0212029_1007625Not Available1265Open in IMG/M
3300022072|Ga0196889_1002693All Organisms → Viruses → Predicted Viral4444Open in IMG/M
3300022072|Ga0196889_1028407Not Available1140Open in IMG/M
3300022072|Ga0196889_1105253Not Available511Open in IMG/M
3300022164|Ga0212022_1062157Not Available575Open in IMG/M
3300022169|Ga0196903_1029602Not Available649Open in IMG/M
3300022178|Ga0196887_1049818Not Available1071Open in IMG/M
3300022178|Ga0196887_1135661Not Available515Open in IMG/M
(restricted) 3300023210|Ga0233412_10382001Not Available629Open in IMG/M
3300024346|Ga0244775_10221311Not Available1583Open in IMG/M
3300025276|Ga0208814_1001886Not Available9406Open in IMG/M
3300025276|Ga0208814_1004451All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.5565Open in IMG/M
3300025508|Ga0208148_1000212All Organisms → cellular organisms → Bacteria22551Open in IMG/M
3300025543|Ga0208303_1028844Not Available1493Open in IMG/M
3300025543|Ga0208303_1072902Not Available777Open in IMG/M
3300025543|Ga0208303_1104401Not Available593Open in IMG/M
3300025543|Ga0208303_1105448Not Available589Open in IMG/M
3300025570|Ga0208660_1021783Not Available1870Open in IMG/M
3300025620|Ga0209405_1096384Not Available859Open in IMG/M
3300025620|Ga0209405_1101045Not Available828Open in IMG/M
3300025626|Ga0209716_1030809All Organisms → Viruses → Predicted Viral1987Open in IMG/M
3300025626|Ga0209716_1057551Not Available1249Open in IMG/M
3300025626|Ga0209716_1081911Not Available960Open in IMG/M
3300025645|Ga0208643_1036575Not Available1585Open in IMG/M
3300025645|Ga0208643_1103573Not Available776Open in IMG/M
3300025705|Ga0209374_1047107Not Available1576Open in IMG/M
3300025806|Ga0208545_1000978All Organisms → cellular organisms → Bacteria13002Open in IMG/M
3300025880|Ga0209534_10160737Not Available1174Open in IMG/M
3300027159|Ga0208020_1008500Not Available2021Open in IMG/M
3300027183|Ga0208798_1034495Not Available584Open in IMG/M
3300027320|Ga0208923_1015632Not Available1335Open in IMG/M
3300027668|Ga0209482_1041471Not Available1755Open in IMG/M
3300027686|Ga0209071_1185849Not Available583Open in IMG/M
3300027704|Ga0209816_1065293Not Available1557Open in IMG/M
3300027714|Ga0209815_1018296Not Available2969Open in IMG/M
3300028125|Ga0256368_1031454Not Available947Open in IMG/M
3300028125|Ga0256368_1047406Not Available759Open in IMG/M
3300028125|Ga0256368_1061166Not Available653Open in IMG/M
3300031519|Ga0307488_10235501Not Available1216Open in IMG/M
3300031658|Ga0307984_1085024Not Available936Open in IMG/M
3300031848|Ga0308000_10021561Not Available2290Open in IMG/M
3300031848|Ga0308000_10395947Not Available525Open in IMG/M
3300031851|Ga0315320_10273462Not Available1215Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous33.64%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine16.82%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.35%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater5.61%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine4.67%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.74%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.80%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine2.80%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.80%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.80%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.87%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.87%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.87%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.87%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.87%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.93%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.93%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.93%
Estuary WaterEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water0.93%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300002930Estuary water microbial communities from Pearl Estuary, Zhujiang, ChinaEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007552Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022063Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300027159Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)EnvironmentalOpen in IMG/M
3300027183Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571 (SPAdes)EnvironmentalOpen in IMG/M
3300027320Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)EnvironmentalOpen in IMG/M
3300027668Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027686Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031848Marine microbial communities from water near the shore, Antarctic Ocean - #3EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1012074223300000101MarineMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNR*
DelMOSpr2010_1002160863300000116MarineMKILTPKEKAIDIIHKISKVNQECSMSLAIVFVNEIILETDNSNYWEKVKSELMLLI*
JGI20155J14468_1000284853300001354Pelagic MarineMKILTPKQKALDIIHKICXVNXECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNR*
Water_100024373300002930Estuary WaterMKILTPKEKALDIIHKISKVNQEYSMSLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ*
Ga0066605_1002007953300004279MarineVANVKRLKNQQTQHTNMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWEKVKSEIVSLNQQ*
Ga0065861_105482833300004448MarineVANVKKLKTQQIQHTKMKILTPKQKAIDIIHKICKVNMECSNSLAIVLVNEIIIETDNSNYWEKVKSEIVALNQQ*
Ga0066224_1009042193300004457MarineMKILTPKEKAIDIIHKISRVNQECSMSLAIVFVNEIILETDNSNYWEKVKSELMLLI*
Ga0066224_113101533300004457MarineVAHLIQYKTYNVANVKKLKTQQIQHTKMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIESDNANYWEKVKSEIVSLNRQ*
Ga0066222_110149643300004460MarineILTPKQKAIDIIHKICKVNMECSNSLAIVLVNEIIIETDNSNYWEKVKSEIVALNQQ*
Ga0066223_116843763300004461MarineVANVKKLKTQQIQHTKMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIESDNANYWEKVKSEIVALNQQ*
Ga0075466_101195063300006029AqueousMKILTPKEKALDIIHKISKVNQEYSISLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ*
Ga0075466_110441023300006029AqueousVANVKKLKTQQIQHTKMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIESDNANYWEKVKSEIVSLNQQ*
Ga0075441_1000938283300006164MarineVENAKKLKNQPTQHTNMKILTPKQKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWERVKSEIITINQ*
Ga0075447_1002061643300006191MarineVANAKKYKNQQIQNINMKILTSKEKAIDIIHKISKVNVECSKLLAIVVVNEIIKQNDNTNYWEKVKSEIIMLNEQ*
Ga0075447_1003351543300006191MarineVENAKKLKNQPTQHTNMKILTPKQKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWEHVKSEIITINQ*
Ga0070749_1068236223300006802AqueousMKILTPKEKALDIIHKISEVNQEYSISLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ*
Ga0075467_1024663323300006803AqueousVVNAKKLKNQQTQNINMKILTPKEKALDIIHKICKVNMECSNLLAIVLVNEIILETDNSNYWEKVKSEIIALNQQ*
Ga0075467_1060897113300006803AqueousMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNTNYWERVKSEIITLNR*
Ga0070748_112482113300006920AqueousKYMKILTPKEKALDIIHKISKVNQEYSMSLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ*
Ga0075444_1010164163300006947MarineMKILTPKEKAIDIIHKICRVNTDCSKSLSIVVINEIIKESDNANYWERVKSEIILLDT*
Ga0075468_1004469053300007229AqueousVANAKKYKNQQTQNINMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ*
Ga0075469_1012374323300007231AqueousVANAKKLKNQPTQHTKMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ*
Ga0070747_106024333300007276AqueousMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIESDNANYWEKVKSEIVSLNQQ*
Ga0070747_111320943300007276AqueousMKILTPKEKAIDIIHKICKVNMECSNQLAIVFVNEIIKQSDNSNYWEHVKSEITNLSK*
Ga0099851_105859923300007538AqueousVANAKKLKNQPTQHTNMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ*
Ga0099847_1000463283300007540AqueousMKILTPKEKAIDIIHKICKVNMECSNQLAIVLVNEIIKQSDNSNYWEHVKSEITNLSK*
Ga0099847_101212943300007540AqueousMKILTPKEKAIDIIHKICKFNMEYSNSLAIVLVNEIIKETDNSNYWEKVKSEIVALNQ*
Ga0102818_101672333300007552EstuarineMKILTPKEKALDIIHKICRVNEECSISLAMVFVNEIISETDNANYWERVKSEIVALNQQQI*
Ga0115550_103589813300009076Pelagic MarineMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ*
Ga0115550_111276543300009076Pelagic MarineMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEII
Ga0115552_127344333300009077Pelagic MarineMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNR*
Ga0114994_1095506813300009420MarineVANAKKYKNQQIQNINMKILTPKQKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ*
Ga0114915_101137653300009428Deep OceanVANAKKYKNQQIQNINMKILTPKEKAIDIIHKISKVNVECSKLLAIVVVNEIIKQNDNTNYWEKVKSEIIMLNEQ*
Ga0115556_102861173300009437Pelagic MarineKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ*
Ga0115556_110606113300009437Pelagic MarineMKILTPKEKAIDIIHKISKVNVECSKSLAIVIVNEIIKQNDNTNYWEKVKSEIIVLNEQ*
Ga0115557_115758113300009443Pelagic MarineMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNQIIKESDNANYWERVKSEIITLNR*
Ga0115571_105872343300009495Pelagic MarineMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWERVKSEIVSLNQQ*
Ga0115571_125482713300009495Pelagic MarineKALDIIHKICKVNSECSNSLAIVFVNEIILETDNSNYWEKVKSEIVALNQQQA*
Ga0115571_132035613300009495Pelagic MarineNVANVKKFKNHQIQNTNMKILTPKEKAIDIIHKICRVNEECSMSLAMVFVNEIISETDNANYWERVKSEIVALNQQQI*
Ga0115570_1008463623300009496Pelagic MarineMKILTPKEKAIDIIHKICRVNEECSMSLAMVFVNEIISETDNANYWERVKSEIVALNQQQI*
Ga0115570_1025263713300009496Pelagic MarineMKILKPKEKAIDIIHKISRVNQECPISLAIVFVNEIIEQTDNANYWEKVKSEIVSLNQQ*
Ga0115570_1027759813300009496Pelagic MarineKNQQIQHTNMKILTPKEKALDIIHKICKVNSECSNSLAIVFVNEIILETDNSNYWEKVKSEIVALNQQQA*
Ga0115564_10019743103300009505Pelagic MarineMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ*
Ga0129324_1034774433300010368Freshwater To Marine Saline GradientVANAKKYKNQQTQNTNMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ*
Ga0180120_1019608423300017697Freshwater To Marine Saline GradientMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIETDNSNYWEKVKSEIVALNQQ
Ga0181399_113468133300017742SeawaterVANVKKFKNHQIQNTNMKILTPKEKALDIIHKICRVNEECSISLAMVFVNEIISETDNANYWE
Ga0181407_103490043300017753SeawaterVVNVKRLKNQQTQHTNMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWERVKSEIVSLNQQ
Ga0181422_106895113300017762SeawaterRLKNQQTQHTNMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWERVKSEIVSLNQQ
Ga0181380_102484163300017782SeawaterMKILTPKQKALDIIHKISKVNQEYSMSLAIVFVNEIILQTDNANYWERVKSEIVALNQQH
Ga0181380_121450733300017782SeawaterMKILTPKEKALDIIYKISKVNQEYSMSLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ
Ga0181379_100323343300017783SeawaterVVNVKRLKNQQTQHTNMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWEKVKSEIVSLNQQ
Ga0206129_1016929923300020182SeawaterMKILTPKQKAIDIIHKICRVNEECSMSLAIVFVNEIILETDNSNYWEKVKSELMLLI
Ga0206130_1003235163300020187SeawaterVANVKRFKNHQIQNTNMKILTPKQKAIDIIHKICRVNEECSMSLAIVFVNEIILETDNSNYWEKVKSELMLLI
Ga0206130_1029329613300020187SeawaterMKILTPKEKALDIVHKISRVNQECPISLAIVFVNEIIEQTDNANYWEKVKSEIVSLNQQ
Ga0213865_1008323413300021373SeawaterVANVKKFKNHQIQNTNMKILTPKEKALDIIHKISKVNQEYSMSLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ
Ga0213869_1003544973300021375SeawaterMKILTPKEKALDIIHKISKVNQEYSMSLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ
Ga0222717_10002328203300021957Estuarine WaterMKILTPKEKALDIIHKICKVNEECSMSLAMVFVNEIILQTDNANYWERVKSEIVALNQQH
Ga0222716_1006779473300021959Estuarine WaterVVNVKKLKNQQIQHTNMKILTPKEKALDIIHKICKVNEECSMSLAMVFVNEIILQTDNANYWERVKSEIVALNQQHT
Ga0212030_100494643300022053AqueousMKILTPKEKAIDIIHKICKVNMECSNQLAIVLVNEIIKQSDNSNYWEHVKSEITNLSK
Ga0212030_100498313300022053AqueousVANAKKYKNQQTQNTNMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0212030_103811133300022053AqueousVANAKKLKNQPTQHTKMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Ga0212023_100003613300022061AqueousAKKYKNQQTQNINMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0212023_100198643300022061AqueousMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Ga0212023_103764713300022061AqueousMKILTPKEKALDIIHKICKVNMECSNLLAIVLVNEIILETDNSNYWEKVKSEIIALNQQ
Ga0212029_100762533300022063AqueousVANAKKLKNQPTQHTNMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Ga0196889_100269323300022072AqueousVANAKKLKNQPTQHTKMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Ga0196889_102840723300022072AqueousMKILTPKEKALDIIHKISKVNQEYSISLAIVFVNEIILQTDNSNYWEKVKSQIVALNQQ
Ga0196889_110525313300022072AqueousVANAKKLKNQPTQHTKMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNAN
Ga0212022_106215723300022164AqueousVANAKKLKNQPTQHTKMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNTNYWERVKSEIITLNR
Ga0196903_102960213300022169AqueousTQNTNMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0196887_104981843300022178AqueousILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0196887_113566113300022178AqueousMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNTNYWERVKSEIITLNR
(restricted) Ga0233412_1038200133300023210SeawaterKNQQTQHTNMKILTPKEKALDIIHKISRVNQECSISLAIVFVNEIIEQTDNSNYWEKVKSEIVSLNQQ
Ga0244775_1022131133300024346EstuarineMKILTPKEKALDIIHKICRVNEECSISLAMVFVNEIISETDNANYWERVKSEIVALNQQQ
Ga0208814_1001886153300025276Deep OceanVENAKKLKNQPTQHTNMKILTPKQKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWEHVKSEIITINQ
Ga0208814_1004451103300025276Deep OceanVANAKKYKNQQIQNINMKILTPKEKAIDIIHKISKVNVECSKLLAIVVVNEIIKQNDNTNYWEKVKSEIIMLNEQ
Ga0208148_100021263300025508AqueousVANAKKYKNQQTQNINMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0208303_102884433300025543AqueousMKILTPKEKAIDIIHKICKFNMEYSNSLAIVLVNEIIKETDNSNYWEKVKSEIVALNQ
Ga0208303_107290223300025543AqueousMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIESDNANYWEKVKSEIVSLNQQ
Ga0208303_110440133300025543AqueousVANAKKLKNQPTQHTNMKILTPKQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNAN
Ga0208303_110544813300025543AqueousMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0208660_102178333300025570AqueousMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Ga0209405_109638423300025620Pelagic MarineMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNR
Ga0209405_110104513300025620Pelagic MarineMKILTPKEKAIDIIHKISRVNQECSMSLAIVFVNEIILETDNSNYWEKVKSELMLLI
Ga0209716_103080953300025626Pelagic MarineQKALDIIHKICKVNIECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNQ
Ga0209716_105755113300025626Pelagic MarineVVNAKKLKNQQTQNINMKILTPKEKALDIIHKICKVNMECSNLLAIVLVNEIILETDNSNYWEKVKSEIIALNQQ
Ga0209716_108191133300025626Pelagic MarineVANVKRLKNQQTQHTNMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWERVKSEIVSLNQQ
Ga0208643_103657533300025645AqueousVANVKKLKTQQIQHTKMKILTPKQKAIDIIHKICKVNVECSNSLAIVLVNEIIIESDNANYWEKVKSEIVSLNQQ
Ga0208643_110357333300025645AqueousVANAKKLKNQPTQHTKMKILTPKQKALDIIHKICKVNTECSNSLAIVLVNEIIKESDNANYWERVKSEIITLNR
Ga0209374_104710733300025705MarineVANVKRLKNQQTQHTNMKILTPKEKALDIIHKISRVNQECPISLAIVFVNEIIEQTDNSNYWEKVKSEIVSLNQQ
Ga0208545_100097813300025806AqueousNQQTQNINMKILTPKEKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0209534_1016073733300025880Pelagic MarineVANVKRFKNHQIQNTNMKILTPKEKAIDIIHKISRVNQECSMSLAIVFVNEIILETDNSNYWEKVKSELMLLI
Ga0208020_100850053300027159EstuarineVVNVKKFKNHQIQNTNMKILTPKEKALDIIHKICRVNEECSISLAMVFVNEIISETDNANYWERVKSEIVALNQQQI
Ga0208798_103449513300027183EstuarineVANVKKFKNHQIQNTNMKILTPKEKALDIIHKICRVNEECSISLAMVFVNEIISETDNANYWERVKSEIVALNQQQI
Ga0208923_101563213300027320EstuarineHQIQNTNMKILTPKEKALDIIHKICRVNEECSISLAMVFVNEIISETDNANYWERVKSEIVALNQQQI
Ga0209482_104147143300027668MarineVANAKKYKNQQIQNINMKILTSKEKAIDIIHKISKVNVECSKLLAIVVVNEIIKQNDNTNYWEKVKSEIIMLNEQ
Ga0209071_118584943300027686MarineVENAKKLKNQPTQHTNMKILTPKQKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWEHVKSEIIT
Ga0209816_106529373300027704MarineMKILTPKEKAIDIIHKICRVNTDCSKSLSIVVINEIIKESDNANYWERVKSEIILLDT
Ga0209815_101829633300027714MarineVENAKKLKNQPTQHTNMKILTPKQKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWERVKSEIITINQ
Ga0256368_103145423300028125Sea-Ice BrineVANAKKYKNQQTQNINMKILTPKQKAIDIIHKISKVNVECSKSLAIVVVNEIIKQNDNTNYWEKVKSEIIVLNEQ
Ga0256368_104740633300028125Sea-Ice BrineMKILTPKEKAIEIIHRICKVNVECSKSLAIVFINEIIKETDNSNYWEKVKSEILVLNQQ
Ga0256368_106116623300028125Sea-Ice BrineMKILTPKEKAIDIIHKICKVNMECSNQLAIVLVNEIIKQSDNSNYWEHVKSEITNLNK
Ga0307488_1023550123300031519Sackhole BrineMKILTPKEKAIDIIHKICKFNMEYSNSLAIVLVNEIIKETDNSNYWERVKSEIVALNQ
Ga0307984_108502453300031658MarineVANAKKYKNQQIQNINMKILTSKEKAIDIIHKISKVNVECSKLLAIVVVNEIIKQNDNKNYWEKVKSEIIMLNEQ
Ga0308000_1002156113300031848MarineVENAKKLKNQPTQHTNMKILTPKQKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWERVKSEIIT
Ga0308000_1039594733300031848MarineKALDIIHKICRVNMECSNQLAIVLVNEIIKESDNTNYWERVKSEIITINQ
Ga0315320_1027346243300031851SeawaterVVNVKKLKNQQIQHTNMKILTPKEKALDIIHKICKVNEECSMSLAMVFVNEIILQTDNANYWEKVKSEIVALNQQHT


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