Metagenome Family F092761

Basic Information
Family ID	F092761
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	42 residues
Representative Sequence	VNLINQISCEAILIWRGHEGRTGWELGLELQEPSPDFWGLDF
Number of Associated Samples	99
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	4.35 %
% of genes near scaffold ends (potentially truncated)	20.56 %
% of genes from short scaffolds (< 2000 bps)	14.95 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Most Common Taxonomy
Group	Unclassified (78.505 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.140 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.29% β-sheet: 20.00% Coil/Unstructured: 75.71%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13614	AAA_31	65.42
PF01656	CbiA	16.82
PF02195	ParBc	5.61
PF02321	OEP	4.67
PF08535	KorB	1.87
PF13738	Pyr_redox_3	1.87
PF14518	Haem_oxygenas_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	9.35
COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	Cell cycle control, cell division, chromosome partitioning [D]	1.87

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.50 %
All Organisms	root	All Organisms	21.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.50 %
cellular organisms	root	All Organisms → cellular organisms	21.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.50 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.50 %
Chloracidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005451\|Ga0066681_10140867	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium	1411	Open in IMG/M
3300005568\|Ga0066703_10032911	All Organisms → cellular organisms → Bacteria → Acidobacteria	2803	Open in IMG/M
3300006163\|Ga0070715_10921603	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300009088\|Ga0099830_10090175	All Organisms → cellular organisms → Bacteria	2268	Open in IMG/M
3300009143\|Ga0099792_10836895	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300009665\|Ga0116135_1120184	All Organisms → cellular organisms → Bacteria → Acidobacteria	963	Open in IMG/M
3300010361\|Ga0126378_12273403	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300012096\|Ga0137389_10446201	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300012189\|Ga0137388_10195896	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1818	Open in IMG/M
3300012203\|Ga0137399_11587723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300012206\|Ga0137380_10123355	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300012582\|Ga0137358_10284919	All Organisms → cellular organisms → Bacteria → Acidobacteria	1122	Open in IMG/M
3300020580\|Ga0210403_10556875	All Organisms → cellular organisms → Bacteria → Acidobacteria	929	Open in IMG/M
3300021432\|Ga0210384_11605326	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300021478\|Ga0210402_10969927	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300024330\|Ga0137417_1344207	All Organisms → cellular organisms → Bacteria → Acidobacteria	2302	Open in IMG/M
3300026298\|Ga0209236_1022894	All Organisms → cellular organisms → Bacteria → Acidobacteria	3462	Open in IMG/M
3300026356\|Ga0257150_1042928	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300026529\|Ga0209806_1281842	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300027826\|Ga0209060_10032694	All Organisms → cellular organisms → Bacteria → Acidobacteria	2604	Open in IMG/M
3300027857\|Ga0209166_10667219	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300027862\|Ga0209701_10073418	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2163	Open in IMG/M
3300032076\|Ga0306924_11853742	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.39%
Host-Associated	Host-Associated	5.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.52%
Plants	Host-Associated → Plants	5.61%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.87%
Peat	Environmental → Terrestrial → Peat	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.70%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.74%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001137	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005877	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_404	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028021	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12637J13337_10167811	3300001137	Forest Soil	NSSRCEAVLIWRGHEGRKGWELGLELIEPSQSFWGVDL*
Ga0066688_102637482	3300005178	Soil	QKLDLVNLVNKNVSKATLIWRGHEGRTGWELGLELQDPPEDFWGLDF*
Ga0066688_102660373	3300005178	Soil	NKVNGNSCDAILIWRGHEGRGGWELGLELQGQQDDFWGVDF*
Ga0066684_100502501	3300005179	Soil	KLRLVNLTNQISCVAVLVWRGHEGRTGWELGLELQEPLADFWGLDF*
Ga0066681_101408673	3300005451	Soil	AVGQKLDLVNLVNKNVSKATLIWRGHEGRTGWELGLELQDPPEDFWGLDF*
Ga0070730_105057713	3300005537	Surface Soil	KLINLINKNECEAVLIWRGHEGRTGWELGLELQGASMDFWGLDF*
Ga0070733_111675851	3300005541	Surface Soil	KNACEAVLIWRGHEGRTGWELGLELQEASMEFWGVEF*
Ga0070695_1017556952	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	LVNLVNKNSVDAILIWRGYEGRTGWELGLELQGPGEEFWGVDF*
Ga0070704_1002522713	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LINLVNKNSVGAILIWRGHEGRAGWELGLELQDAGEEFWGVDF*
Ga0066670_108897122	3300005560	Soil	QISCEAVLVWRGHEGRTGWELGLELQEPLADFWGLDF*
Ga0066699_108324721	3300005561	Soil	VSKATLIWRGHEGRTGWELGLELQDPPEDFWGLDF*
Ga0066703_100329115	3300005568	Soil	GQKLRLVNLTNQISCDAVLVWRGHEGRTGWELGLELQEPSPDFWGLDF*
Ga0066691_102122671	3300005586	Soil	LRLVNLTNQISCEAVLVWRGHEGRTGWELGLELQEPSPDFWGLDF*
Ga0066903_1090564252	3300005764	Tropical Forest Soil	QNACESVLVWRGHEGRAGWELGLELQKMPADFWGLDF*
Ga0068860_1005778631	3300005843	Switchgrass Rhizosphere	KNSVDAVLIWRGHEGRTGWELGLELQDAGEEFWGVDF*
Ga0075296_10300792	3300005877	Rice Paddy Soil	NLINQISCEATLVWRGHEGPTGWELGLELQEPSPDFWGLDF*
Ga0080027_101959732	3300005993	Prmafrost Soil	GNISAARLIWRGHEGRTGWELGLELDNPPHDFWGLEF*
Ga0070715_109216032	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	QKLRLINLTNQHECDSVLVWRGHEGRSGWELGLELQKLPADFWGLDF*
Ga0070716_1015635111	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	KNVCKAILIWRGHEGRTGWELGLELQNPPEDYWGLDF*
Ga0066660_104727822	3300006800	Soil	INLMNQQACDSVLIWRGHEGRSGWELGLELQNTPADFWGLDF*
Ga0075433_105414772	3300006852	Populus Rhizosphere	NKNSVDAILIWRGHEGRTGWELGLELQDAGDEFWGVDF*
Ga0099794_101549842	3300007265	Vadose Zone Soil	VNLINQISCEAVLIWRGHEGRTGWELGLELQEPSPDFWGLDF*
Ga0099830_100901754	3300009088	Vadose Zone Soil	FPVGQKLRLVNLINQISCEAILIWRGHEGRTGWELGLELLEPSRDFWGLDF*
Ga0099830_103634951	3300009088	Vadose Zone Soil	HISCEAILVWRGHEGRAGWELGLELQQPSPDFWGLDF*
Ga0099830_104657302	3300009088	Vadose Zone Soil	LVNLINQISCEAVLVWRGHEGRTGWELGLELQEPSPGFWGLDI*
Ga0099828_102928621	3300009089	Vadose Zone Soil	TNKKTSDAILIWRGHEGRAGWELGLEIQDKPEDFWGIQF*
Ga0099792_108368952	3300009143	Vadose Zone Soil	GVGQKLRLVNLLNQISCEATLVWRGHEGRAGWELGLELQDPSPDFWGLDF*
Ga0116135_11201842	3300009665	Peatland	TVGQRLNLVNLTNQSVCEAVLVWRGHEGRSGWELGLELQRMPSDFWGVDF*
Ga0126380_102533363	3300010043	Tropical Forest Soil	GNVADAVLIWRGHEGRAGWELGIELQGFQEEFWGIDF*
Ga0126382_104159251	3300010047	Tropical Forest Soil	LVNLVNKNSVDAVLIWRGHEGRTGWELGLELQGPGDEFWGVDF*
Ga0126378_122734031	3300010361	Tropical Forest Soil	LGQKLELVNLVNKNVSKAILIWRGHEGRTGWELGLELENPPDDFWGLDF*
Ga0126379_100079111	3300010366	Tropical Forest Soil	KNASNQKESDATLIWRGHEGRTGWELGLELLNPPADFWGLEF*
Ga0105239_122844711	3300010375	Corn Rhizosphere	HLINLTNQNVCEAILVWRGHEGRSGWELGLELQHATEEFWGVDF*
Ga0126381_1023053182	3300010376	Tropical Forest Soil	ESDATLIWRGHEGRTGWELGLELLNPPADFWGLEF*
Ga0126383_104117311	3300010398	Tropical Forest Soil	KNSVDAILVWRGHEGRTGWELGLELQGPGEEFWGVDL*
Ga0137389_104462012	3300012096	Vadose Zone Soil	GQKLRLVNLINQISCEAVLVWRGHEGRAGWELGLELQQPSPDFWGLDF*
Ga0137388_101958963	3300012189	Vadose Zone Soil	FTVGQKLRLVNLINQISCEAILIWRGHEGRTGWELGLELQEPSADFWGLDF*
Ga0137399_115877232	3300012203	Vadose Zone Soil	GQRLRLVNKVNGNSCDAILIWRGHEGRSGWELGLELQGQQDDFWGVDF*
Ga0137362_103437611	3300012205	Vadose Zone Soil	VNKNVAKAILIWRGHEGRTGWELGLELVNPPDDYWGLDF*
Ga0137380_101233551	3300012206	Vadose Zone Soil	RLVNLINQISCEAVLVWRGHEGRTGWELGLELQEPSPDFWGLDF*
Ga0137378_105882091	3300012210	Vadose Zone Soil	NKNVSKATLIWRGHEGRTGWELGLELQDPPEVFWGLDF*
Ga0137361_105759521	3300012362	Vadose Zone Soil	VNLVNKNVSKATLIWRGHEGRTGWELGLELQDPPEDFWGLDF*
Ga0137358_102849192	3300012582	Vadose Zone Soil	VGQKLDLVNLVNKNVSKATLIWRGHEGRTGWELGLELQDPPEDFWGLDF*
Ga0137413_106578112	3300012924	Vadose Zone Soil	ACEAILVWRGHEGRAGWELGLELQDPSPDFWGLDF*
Ga0137413_107196501	3300012924	Vadose Zone Soil	NSCDAILIWRGHEGRSGWELGLELQGQQDDFWGVDF*
Ga0137419_113466122	3300012925	Vadose Zone Soil	NVAKAILIWRGHEGRAGWELGLELVNPPDDYWGLDF*
Ga0137416_104483441	3300012927	Vadose Zone Soil	NQNSCEAVLVWRGHEGRKGWELGLELQDATRDFWGLDV*
Ga0137404_103905172	3300012929	Vadose Zone Soil	NSCEAVLVWRGHEGRKGWELGLELQDATLDFWGLDV*
Ga0126375_111111201	3300012948	Tropical Forest Soil	TLINLVNQKSSDAILIWRGHEGHTGWELGLELQGPSEDFWGLDF*
Ga0157372_132705422	3300013307	Corn Rhizosphere	VCDSILVWRGHEGRSGWELGLELQKMPADFWGLDF*
Ga0182024_105288601	3300014501	Permafrost	QSACESVLVWRGHEGRSGWELGLELQKMPADFWGVDF*
Ga0182038_100857974	3300016445	Soil	LVNQANKNSVDAILVWRGQEGRTGWEVGLELQGAGEEFWGMDF
Ga0182038_101783531	3300016445	Soil	EAADAILIWRGHEGRAGWELGIELQNAAEAFWGVEF
Ga0187802_100682941	3300017822	Freshwater Sediment	NGSNARQSEAVLIWRGHEGRSGWELGLELVNPPEEFWGVDF
Ga0187780_101561971	3300017973	Tropical Peatland	MRLINLTNQISTEATVIWRGHEGPTGWELGVELLEPSPDFWGLDF
Ga0066669_105529521	3300018482	Grasslands Soil	QKLDLVNLVNKNVSKATLIWRGHEGRTGWELGLELQDPPEDFWGLDF
Ga0210407_111763822	3300020579	Soil	QSEAVLIWRGHEGRTGWELGLELRDPSPEFWGPDL
Ga0210403_105568752	3300020580	Soil	QRLRLVNLVNSSQSEAVLIWRGHEGRTGWELGLELRDPSPEFWGPDL
Ga0210399_106065722	3300020581	Soil	KLRLINLINQNACNSVLVWRGHEGRSGWELGLELESIPSDFWGLDF
Ga0210405_110845662	3300021171	Soil	INKNASEAVLIWRGHEGRAGWELGLELQEASMDFWGVEF
Ga0210393_113345502	3300021401	Soil	INKNACEAILIWRGHENRTGWELGLELQGASMDFWGVDF
Ga0210389_107186112	3300021404	Soil	LVNLINKNACEAILIWRGHENRTGWELGLELQGAPMDFWGVDF
Ga0210387_111859751	3300021405	Soil	VNLVNKNVAQALLVWRGHEGRTGWELGLELQDPPEDFWGLDF
Ga0210394_109589642	3300021420	Soil	LLNQISCEAVLVWRGHEGRKGWELGLELQEPTADFWGLDF
Ga0210384_116053261	3300021432	Soil	VGQRLRVINLTNQSACEAVLVWRGHEGRSGWELGLELQKMPAEFWGVDF
Ga0210391_103019023	3300021433	Soil	LINQISCEAVLVWRGHEGRKGWELGLELQEPPLDFWGLDF
Ga0210398_114319151	3300021477	Soil	ACEAVLIWRGHEGRTGWELGLQLQDASMDFWGLDF
Ga0210402_100302881	3300021478	Soil	NVAQALLVWRGHEGRTGWELGLELQDPPEDFWGLDF
Ga0210402_109699271	3300021478	Soil	GQKLRLVNLTNQNACSSVLVWRGHEGRSGWELGLELESIPSDFWGLDF
Ga0126371_127815861	3300021560	Tropical Forest Soil	NACESVLVWRGHEGRAGWELGLELQKMPADFWGLDF
Ga0137417_13442073	3300024330	Vadose Zone Soil	VGQKLRLVNLINQISCEAVLIWRGHEGRAGWELGLELQEPSPDFWGLDF
Ga0207671_115446431	3300025914	Corn Rhizosphere	TNQHVCDSILVWRGHEGRSGWELGLELQKMPADFWGLDF
Ga0209236_10228945	3300026298	Grasslands Soil	VGQKLRLVNLINQISCEAILIWRGHEGRTGWELGLELQEPSPDFWGLDF
Ga0209647_10604963	3300026319	Grasslands Soil	VNKVNGNSCDAILIWRGHEGRSGWELGLELQGQQDDFWGVDF
Ga0209647_12083621	3300026319	Grasslands Soil	INQISCEAILIWRGHEGRAGWELGLELREPSPDFWGLDF
Ga0209158_10990441	3300026333	Soil	LVNLTNQISCEAVLVWRGHEGRTGWELGLELQEPSPDFWGLDF
Ga0257150_10429281	3300026356	Soil	QKLRLVNLINQISCEAVLIWRGHEGRAGWELGLELQEPSPDFWGLDF
Ga0257179_10208182	3300026371	Soil	NLISCEATLIWRGHEGRAGWELGLELQEPSPDFWGLDF
Ga0257165_10894831	3300026507	Soil	ISCEAILIWRGHEGRTGWELGLELQEPSPDFWGLDF
Ga0209806_12818421	3300026529	Soil	FNVGQKLRLVNLTNQISCDAVLVWRGHEGRTGWELGLELQEPSPDFWGLDF
Ga0209807_12457051	3300026530	Soil	LINLTNQHVCDSILVWRGHEGRSGWELGLELQKMPADFWGLDF
Ga0179587_102436251	3300026557	Vadose Zone Soil	VNLINSSKSEAVLIWRGHEGRTGWELGLELHDPSPEFWGLDF
Ga0208365_10259962	3300027070	Forest Soil	QFSSDASVIWRGHEGPAGWELGVELLEPSPDFWGLDF
Ga0209004_10296802	3300027376	Forest Soil	DLVNLVNKNVCKAILIWRGHEGRTGWELGLELQNPPEDYWGLDF
Ga0209117_11377652	3300027645	Forest Soil	NLVNKNVAKAILIWRGHEGRTGWELGLELVNPPDDYWGLDF
Ga0209060_100326941	3300027826	Surface Soil	VGQRLHLVNLTNQNVCEAILVWRGHEGRSGWELGLELQHATEEFWGVDF
Ga0209693_100794443	3300027855	Soil	AVCEAILVWRGHEGRSGWEIGLELQHATEEFWGMDF
Ga0209166_106672191	3300027857	Surface Soil	GFAVGQRLKLINLINKNECEAVLIWRGHEGRTGWELGLELQEASMEFWGLDF
Ga0209701_100734181	3300027862	Vadose Zone Soil	FPVGQKLRLVNLINQISCEAILIWRGHEGRTGWELGLELLEPSRDFWGLDF
Ga0209488_103185691	3300027903	Vadose Zone Soil	INQISCEAILIWRGHEGRTGWELGLELQEPSADFWGLDF
Ga0265352_10024811	3300028021	Soil	LINKNACEAILIWRGHEGRTGWELGLQLQEASMDFWGLDF
Ga0209526_100578541	3300028047	Forest Soil	LINLTNQSTCAAILVWRGHEGRSGWELGLELQKMPVDFWGVDF
Ga0268264_100457725	3300028381	Switchgrass Rhizosphere	SVDAVLIWRGHEGRTGWELGLELQDAGEEFWGVDF
Ga0302233_101999301	3300028746	Palsa	NKISEATLIWRGHEGRQGWELGLELLNPPDGFWAIDL
Ga0170834_1023374191	3300031057	Forest Soil	LVNKNVCKAVLIWRGHEGRTGWELGLELQHPPDDYWGLDF
Ga0170823_131402841	3300031128	Forest Soil	NVAKAILIWRGHEGRTGWELGLELVNPPDDYWGLDF
Ga0170824_1276714302	3300031231	Forest Soil	VNLINQISCEAILIWRGHEGRTGWELGLELQEPSPDFWGLDF
Ga0318538_104149071	3300031546	Soil	VLNMVNKEAADAILIWRGHEGRAGWELGIELQNAAEAFWGVEF
Ga0307468_1013908931	3300031740	Hardwood Forest Soil	VSEATLIWRGHEGRTGWELGLELQNAPAEFWGVDF
Ga0307468_1016675721	3300031740	Hardwood Forest Soil	AADAVLIWRGHEGRTGWELGLELREPPAEFWGVEF
Ga0307479_105419811	3300031962	Hardwood Forest Soil	KLRLVNLTNQISCEAVLVWRGHQGRTGWELGLELREPSADFWGLDF
Ga0310911_103193391	3300032035	Soil	VNRETADAILIWRGHEGRTGWELGLELQDAGQAFWGVEF
Ga0318505_103855751	3300032060	Soil	ANKNSVDAILVWRGQEGRTGWEVGLELQGAGEEFWGMDF
Ga0306924_118537422	3300032076	Soil	FALGQRLNLVNLLNSNRSVVVLIWRGHEGRAGWELGLELQEPPADFWGVEF
Ga0318540_104492732	3300032094	Soil	VNKQTADAILIWRGHEGRAGWELGVELQDAGEEFWGVEF
Ga0335085_114755352	3300032770	Soil	NLVNKHQCEAIVVWRGHEGRKGWELGIELQNPSVEFWEVDF
Ga0335083_105062662	3300032954	Soil	QSVCEAILVWRGHEGRSGWELGLELQHATEEFWGLDF

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092761

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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