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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F092804 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 107 |
| Average Sequence Length | 48 residues |
| Representative Sequence | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGALRSA |
| Number of Associated Samples | 101 |
| Number of Associated Scaffolds | 107 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.93 % |
| % of genes from short scaffolds (< 2000 bps) | 0.93 % |
| Associated GOLD sequencing projects | 99 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.52 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.430 % of family members) |
| Environment Ontology (ENVO) | Unclassified (30.841 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (41.121 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 29.87% β-sheet: 15.58% Coil/Unstructured: 54.55% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 107 Family Scaffolds |
|---|---|---|
| PF07883 | Cupin_2 | 28.97 |
| PF08495 | FIST | 21.50 |
| PF13560 | HTH_31 | 8.41 |
| PF10442 | FIST_C | 6.54 |
| PF04672 | Methyltransf_19 | 3.74 |
| PF00005 | ABC_tran | 3.74 |
| PF01266 | DAO | 1.87 |
| PF08044 | DUF1707 | 0.93 |
| PF07992 | Pyr_redox_2 | 0.93 |
| PF03795 | YCII | 0.93 |
| PF03404 | Mo-co_dimer | 0.93 |
| PF00890 | FAD_binding_2 | 0.93 |
| PF02518 | HATPase_c | 0.93 |
| COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
|---|---|---|---|
| COG3287 | FIST domain protein MJ1623, contains FIST_N and FIST_C domains | Signal transduction mechanisms [T] | 21.50 |
| COG4398 | Small ligand-binding sensory domain FIST | Signal transduction mechanisms [T] | 21.50 |
| COG2350 | YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.93 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300021405|Ga0210387_11268774 | Not Available | 638 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 22.43% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 8.41% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 8.41% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 6.54% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 4.67% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 4.67% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.74% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.74% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.74% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.80% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 2.80% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 2.80% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.80% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.80% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.87% |
| Attine Ant Fungus Gardens | Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens | 1.87% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.93% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.93% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.93% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.93% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.93% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.93% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.93% |
| Rhizosphere Soil | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil | 0.93% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006791 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Host-Associated | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010858 | Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010876 | Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010880 | Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011411 | Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG | Host-Associated | Open in IMG/M |
| 3300012154 | Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ037 MetaG | Host-Associated | Open in IMG/M |
| 3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012511 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10 | Environmental | Open in IMG/M |
| 3300014154 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015 | Environmental | Open in IMG/M |
| 3300014157 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300017654 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017926 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 | Environmental | Open in IMG/M |
| 3300017928 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1 | Environmental | Open in IMG/M |
| 3300018012 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5 | Environmental | Open in IMG/M |
| 3300019875 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2 | Environmental | Open in IMG/M |
| 3300020004 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2 | Environmental | Open in IMG/M |
| 3300020140 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021415 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1 | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300025905 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026475 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A | Environmental | Open in IMG/M |
| 3300027047 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes) | Environmental | Open in IMG/M |
| 3300027166 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF033 (SPAdes) | Environmental | Open in IMG/M |
| 3300027575 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027641 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027787 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) | Environmental | Open in IMG/M |
| 3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300028146 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23 | Environmental | Open in IMG/M |
| 3300028720 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357 | Environmental | Open in IMG/M |
| 3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
| 3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
| 3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030707 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2) | Environmental | Open in IMG/M |
| 3300030743 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly | Environmental | Open in IMG/M |
| 3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031835 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 | Environmental | Open in IMG/M |
| 3300031845 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031894 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300032009 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
| 3300032052 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19 | Environmental | Open in IMG/M |
| 3300032065 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 | Environmental | Open in IMG/M |
| 3300032089 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032782 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300034819 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 | Host-Associated | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGIcombinedJ26739_1017732271 | 3300002245 | Forest Soil | MKYMLLFWVDESGEXTADEDAAQLVGVKSWLEDMTERGIVL |
| Ga0062384_1001227511 | 3300004082 | Bog Forest Soil | MKYMLLFWVDESGEITADEDAAQIVAVKSWVEDMTERGITLSGGALRSAREAKIARVRD |
| Ga0070669_1005519523 | 3300005353 | Switchgrass Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVH |
| Ga0070673_1007009403 | 3300005364 | Switchgrass Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGALRSA |
| Ga0070714_1013371162 | 3300005435 | Agricultural Soil | MKYMMMFWVDEAAEATPDEDAALMIAVKSWVDEMTERGVVGYGGALRSAGEAAIVQVRDG |
| Ga0070710_108024072 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MKYMMLFWVDESAATTADEDAATMVAVKSWVDQMTEHGVL |
| Ga0070710_110752971 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MKYMMMFWVDEAAEATPDEDAAMLIAVKSWVDEMTARGLLVHGGALRSAGEAAIVH |
| Ga0070762_108828061 | 3300005602 | Soil | MKYMLLFWVDESGAVTADEDAAQLVAVKSWVEDMTERGIA |
| Ga0066903_1007656573 | 3300005764 | Tropical Forest Soil | MKYMLMFWVEESAGGTEDEAAAMAAAVTSWVAQMAERGVLLHG |
| Ga0068863_1021474712 | 3300005841 | Switchgrass Rhizosphere | MKYMMLFWVDESAATTADEDAATMVAVKSWVDQMTEHGVLVHGGALRSAG |
| Ga0075017_1012470561 | 3300006059 | Watersheds | MLMFWVDESAEVTADDDAAMMIAVKAWVEQMTERGVRLHGAPLRSAGDAKIVRVRDGGLL |
| Ga0070715_101212883 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MKYMMMFWVDEAAEATPDEDAAMMIAVKSWVDEMTERGVVGYGGALRSA |
| Ga0079222_121757782 | 3300006755 | Agricultural Soil | MKYMMLFWVDESAETTAEEDAAMMVAVKSWVDQMTERRILVHGGALRS |
| Ga0066653_103045232 | 3300006791 | Soil | VKYMMMFWVDETATATADEDAAIMIAVKSWVEQMTERGVMVHGGALRSAGEAA |
| Ga0099792_108245481 | 3300009143 | Vadose Zone Soil | MKYMMMFWVDEAAEATPDEDAAMMIAVKSWVDEMTARG |
| Ga0105243_101073221 | 3300009148 | Miscanthus Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTER |
| Ga0105241_102706233 | 3300009174 | Corn Rhizosphere | MKYMMLFWVDESAATTADEDATTMVAVKSWVDQMTEHGVLVHGGALRSAV |
| Ga0136449_1036814661 | 3300010379 | Peatlands Soil | MKYMLMFWVDESAEVTADHDAAMMIAVKSWVEQMTERGVRLYGGPLRSAGEAKIVHVRD |
| Ga0134126_113710172 | 3300010396 | Terrestrial Soil | MKYMMMFWVDESGETTADEDAAMMITVKSWVDQMTERGVLVHGGALRSAGEAAIVHVRD |
| Ga0134126_118597252 | 3300010396 | Terrestrial Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMT |
| Ga0134121_121364611 | 3300010401 | Terrestrial Soil | MKYMMLFWVDESAATTADEDAATMVAVKSWVDQMTEHGVLVHGGALRSAGEA |
| Ga0126345_11769951 | 3300010858 | Boreal Forest Soil | MKYMLLFWVDESGEMTADEDADQLVGVKSWLEDMTE |
| Ga0126361_104297612 | 3300010876 | Boreal Forest Soil | MKYMLLFWVDESGETTADEDAAQIVAVKSWVEEMT |
| Ga0126361_106225371 | 3300010876 | Boreal Forest Soil | MKYMLMFWVDESAEVTADEDAAMMIAVKSWVEDMTERGILLHGGPLCSVSDAKIVAVRD |
| Ga0126350_100870762 | 3300010880 | Boreal Forest Soil | MKHMLLFWVDESGEITADEDAAQIVAVKSWVEDMTERGIALSGGSLRSA |
| Ga0126350_122667481 | 3300010880 | Boreal Forest Soil | MKYMLMFWVDESAEVTADEDVAMMIAVKSWVEDMTERGMLLHGGPLC |
| Ga0137391_114178121 | 3300011270 | Vadose Zone Soil | MKYMLMFWVDESAEVTADDDAAMMIAVKSWVEQMNER |
| Ga0153933_11429241 | 3300011411 | Attine Ant Fungus Gardens | METTMKYMLLFWVDETGEVTAEEDAAMMTAVKSWVEEMTERGVRVSG |
| Ga0153953_10415901 | 3300012154 | Attine Ant Fungus Gardens | MKYMLLFWVDESGEITADEDAAQIVAVKSWVEEMTERGITLS |
| Ga0137399_104133673 | 3300012203 | Vadose Zone Soil | MKFMMMFWVDESAAVTADEDATTMIAVKSWVDEMTERGVMVYGGALRSAGEAAIIQVRD |
| Ga0137380_109062551 | 3300012206 | Vadose Zone Soil | MFWVDETATITADEDAAMMIAVKSWVEEMTARGVM |
| Ga0137386_110528281 | 3300012351 | Vadose Zone Soil | MKYMLMFWVDESAEVTADDDAAMMIAVKSWVEQMTERGVRLYGGPLRSAGEARI |
| Ga0137390_113875531 | 3300012363 | Vadose Zone Soil | MKYMLMFWVDESAEVTADDDAAMMIAVKSWVEQMNERGVRLYGGPLRSAGE |
| Ga0157332_10127303 | 3300012511 | Soil | MKYMVMFWVDESGETTADEDAAIMIAVKSWVDQMTERGVLVHGGALRSAGEAAIVHVRDG |
| Ga0134075_105018812 | 3300014154 | Grasslands Soil | MKYMMMFWVDESAEVTADEDAAMMIAVKSWVDQMTECGVMVHGGALRSAAEAAIVHI |
| Ga0134078_103377091 | 3300014157 | Grasslands Soil | MKYMMLFWVDESAGTTADEDAATMVAVKSWVDQMTERGIMVHGGAL |
| Ga0157379_113417462 | 3300014968 | Switchgrass Rhizosphere | MKYMMMFWVDESGETTADEDAAVMIAVKSWVDQMT |
| Ga0134069_13883892 | 3300017654 | Grasslands Soil | MKYMMMFWVDEAAEATPDEDAAMMIAVKSWVDQMTECGVMVHGGALRSAAEAAIVHIRDGEVLV |
| Ga0187802_100992981 | 3300017822 | Freshwater Sediment | MKYMLLFWVDESAEVTADEDAAMMIAVKSWVEDMTE |
| Ga0187807_12975771 | 3300017926 | Freshwater Sediment | MKYMLLFWVDESAEVTADEDAAMMIAVKSWVEGMTERGVRLSGGPLRS |
| Ga0187806_12783961 | 3300017928 | Freshwater Sediment | MKYMLLFWVDESGEITAEEDAALKIAVKSWLDEMTERGVRVGGGPLRSAREAKIVSVRDRELLV |
| Ga0187810_103639242 | 3300018012 | Freshwater Sediment | MKYMLLFWVDESGEVTADEDAAQIMAVNSWVEDMTERGILLSGGSLRSAREAKIARVR |
| Ga0193701_10457381 | 3300019875 | Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGALRSAGEAAIVHVRDG |
| Ga0193755_11687651 | 3300020004 | Soil | MKYMMMFWVDESGETTADEDTAMMIAVKSWVDQMTERGVLVHGGALRSAGEAAI |
| Ga0179590_11903151 | 3300020140 | Vadose Zone Soil | MKYMMMFWVDEAAEATPDEDAAMMIAVKSWVDEMTARGVMVHGGALRSAGEAAIVHVR |
| Ga0179592_102679382 | 3300020199 | Vadose Zone Soil | MKYMMMFWVDEAAEATPDEDAAMMIAVKSWVDEMTARGVMVHGGALRSAGEAAIVHV |
| Ga0210395_111644422 | 3300020582 | Soil | MKYMMLFWVDESGEITADEDAAQIVAVKSWVEDMTERGITLSGGSL |
| Ga0210405_107648071 | 3300021171 | Soil | MKYMLMFWVDESAGVTEDEDAAMMIAVKSWVEKMTERGVLLH |
| Ga0210396_103376423 | 3300021180 | Soil | MKYMMMFWVDEAAEATPDEDAAMLIAVKSWVDEMTARGLLVHGGALRSA |
| Ga0210385_109815632 | 3300021402 | Soil | MKYMLMFWVDESAEVTADDDAAMMIAVKAWVEQLTERGVRLH |
| Ga0210387_105028621 | 3300021405 | Soil | MKYMLMFWVDESAEVTGDDDAAMMIAVKSWVEQMTERGVRL |
| Ga0210387_112687741 | 3300021405 | Soil | MKYMLMFWVDESAEVTPDDDAAMMIAVKSWVEQMTERGVRLYGGPLRSAGEAKIVHVR |
| Ga0210386_115458331 | 3300021406 | Soil | MKYMLMFWVDESAEVTADDDAAMMIAVKSWVEQMTERGVRLSGGLLRSAG |
| Ga0193694_10250422 | 3300021415 | Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTGRGVLMHGGALRS |
| Ga0210394_113493302 | 3300021420 | Soil | MKYMLLFWVDEAAESTADEDAAMLIAVKSWVEKLTEQGVRVTGGPLRSVAEGRIVRVRDD |
| Ga0210390_105996061 | 3300021474 | Soil | MKYMLLYWVDESGEITADEDAAQIVAVKSWVEEMTERGITLSGGSLRSAREAKI |
| Ga0210398_111171541 | 3300021477 | Soil | MKYMLLFWVDESAEVTEDEDAATLIAVKSWVEKMAEQ |
| Ga0126371_112271512 | 3300021560 | Tropical Forest Soil | MKYMLMFWVEESAGGTEDEAAAMAAAVTSWVAQMAERGVLLHGVT |
| Ga0207685_107034531 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | MKYMMLFWVDESAATTADEDAATMVAVKSWVDQMTEHGVLVHGGA |
| Ga0207643_101179553 | 3300025908 | Miscanthus Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGALRS |
| Ga0207646_114338721 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MKYMLMFWVDESAGVTEDEDAAMMIAVASWVEKMTERGILLHGSP |
| Ga0207650_108763292 | 3300025925 | Switchgrass Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTQRGVLVHGGA |
| Ga0207687_102737593 | 3300025927 | Miscanthus Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTEHGVLVHGG |
| Ga0207686_108013622 | 3300025934 | Miscanthus Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTEHGVLV |
| Ga0207661_105063513 | 3300025944 | Corn Rhizosphere | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGALRSAGEAAI |
| Ga0257147_10356672 | 3300026475 | Soil | MKFMMMFWVDESAAVTADEDATTMIAVKSWVDEMTERGV |
| Ga0208730_10024141 | 3300027047 | Forest Soil | MKYMLLFWVDESGEITADEDAAQIVAVKSWVEEMTERGITLSGGSL |
| Ga0208729_1120931 | 3300027166 | Forest Soil | MKYMLLFWVDESGEITADEDAAQIVAVKSWVEEMTER |
| Ga0209525_10917631 | 3300027575 | Forest Soil | MKYMLLFWVDESGEVTTDEDAAQLVAVKSWLEDMTERGIVLSGGALCS |
| Ga0208827_10954702 | 3300027641 | Peatlands Soil | MKYMLLFWVDESAEATADEDAAMMIAVKSWVEDMTE |
| Ga0209177_100910111 | 3300027775 | Agricultural Soil | MKYMMLFWVDESAETTAEEDAAMMVAVKSWVDQMTERRILVHGGALRSAGEAAIVHVRNG |
| Ga0209074_103071822 | 3300027787 | Agricultural Soil | MKYMMLFWVDESAETTAEEDAAMMVAVKSWVDQMTERRILVH |
| Ga0209701_100387505 | 3300027862 | Vadose Zone Soil | MKYMLMFWVDESAETTQDEDVATLIAVKSWVEKMAEQGVRRHGGALRSVREGRIVRIRDDEL |
| Ga0247682_10451971 | 3300028146 | Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGV |
| Ga0307317_100746301 | 3300028720 | Soil | MKYMMMFWVDESGETTADEDTAMMIAVKSWVDQMTERGVLVYGGALRSAGEAAIVH |
| Ga0307282_102542472 | 3300028784 | Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTGRGVLMHGGALRSAGEAAIVHARDGEVLVSD |
| Ga0310037_101089982 | 3300030494 | Peatlands Soil | MLLFWVDESGEITAEEDAALKIAVKSWLEEMTERGVRVGGGPLRSAREAKIVSVR |
| Ga0311370_112984532 | 3300030503 | Palsa | MKYMMMFWVDESAAVTADEDADMMIAVKSWAEKMEERGILLGGGALRSAGEARIVRVRDG |
| Ga0310038_104291241 | 3300030707 | Peatlands Soil | MKYMLMFWVDESAEVTADDDAAMMIAVKSWVEQMTERGVRLYGGPLRSAGEAKIVHVRDG |
| Ga0265461_137426901 | 3300030743 | Soil | MKYMLLLWVDEAAESTADQDAAMLIAVKSWVEKLTEQGVRLTGGPLRSVAEGRIVRI |
| Ga0265760_102687222 | 3300031090 | Soil | MKYMLLFWVDESGEMTADEDAAQIVAVKSWVEEMTERGITLNGGSLRSAREAKIARV |
| Ga0307498_101960142 | 3300031170 | Soil | MKYMMLFWVDESAETTADEDAAMMVAVKSWVDQMTERG |
| Ga0318555_103342592 | 3300031640 | Soil | VKYMLLFWVDESGEETEEENAALIIALKSWLKEMTER |
| Ga0310686_1082188642 | 3300031708 | Soil | MKYMLLFLIDESGEITADEDAAQIVAVKSWVEEMTERGITLSGGSLRSA |
| Ga0307468_1007248903 | 3300031740 | Hardwood Forest Soil | MKYMMMFWVDEAAEATPDEDAAMMIAVKSWVDEMTERGVVGYGGALRSAS |
| Ga0307477_109298812 | 3300031753 | Hardwood Forest Soil | MKYMLLFWVDESGEITPDEDADQMVAVKSWVEDMAERRITLSGGA |
| Ga0318517_102539152 | 3300031835 | Soil | MKYMLLFWVDESAEVTADEDAAVMIAVKAWVEDMTERGVRLHGGPLRSAREAR |
| Ga0318511_102486531 | 3300031845 | Soil | MKYMLMFWVDESGEVTAEEDAAMLIAVKSWVEEMS |
| Ga0306925_112029041 | 3300031890 | Soil | MLLFWVDEAGESTADEDAAMMTAVTSWLEEITECGVHVSGGPLR |
| Ga0306925_118954802 | 3300031890 | Soil | MKYMLMFWVNESADSTADDDAATMTAVKSWVDEMSGRGVRLSGGPL |
| Ga0318522_103413531 | 3300031894 | Soil | MKYMLMFWVNESADSTADDDAATMTAVKSWVDEMSGRGVRLSGGPLRSAAEARIVRVADGEV |
| Ga0318551_107574082 | 3300031896 | Soil | MKYMLMFWVNESADSTADDDAATMTAVKSWVDEMSGRGVRLSGGPLRSAAEAR |
| Ga0318563_102043441 | 3300032009 | Soil | MKYMLMFWVDESGEVTAEEDAAMLIAVKSWVEEMSERGVLLDGGALRSAAEAK |
| Ga0310911_101566972 | 3300032035 | Soil | MLLFWVDEAGESTADEDAAMMTAVTSWLEEMTERGVRVSGGPLRSAREAKIVSVRDHEL |
| Ga0318558_103438852 | 3300032044 | Soil | MKYMLMFWVNESADSTADDDAAMMTAVKSWVDEMSGRGVRLSGGPLRSAAEAR |
| Ga0318506_101936652 | 3300032052 | Soil | MLLFWVDEAGESTADEDAAMMTAVTSWLEEMTERGVRVSGGPLRSAREAKIV |
| Ga0318513_104595611 | 3300032065 | Soil | MKYMLLFWVDESAEVRADEDAAVMIAVKAWVEDMTERGVRLHGGPLRSAREARIARV |
| Ga0318525_105072481 | 3300032089 | Soil | VKYMLLFWVDESGEETEEENAALIIALKSWLKEMTERGVRV |
| Ga0307470_113115261 | 3300032174 | Hardwood Forest Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGALRSAGEA |
| Ga0335082_115697061 | 3300032782 | Soil | MRYMFLFWVDESGEVTADDDAALMIAVKSWVQEMSGRAVLLSGGALRSAAEAR |
| Ga0335079_105191661 | 3300032783 | Soil | MKYMLLFWVDESAETTADEDAAMMIAVKSWVELMTERGVRVSGGPLRSA |
| Ga0335078_108863251 | 3300032805 | Soil | MKYMLLFWVDESAETTADEDAAMMIAVKSWVELMTERGVRV |
| Ga0335080_103919311 | 3300032828 | Soil | MKYMLIFWVDESADSTADDDAAMMTAVKSWVDEMSGRGVRLSGGPLRSAAEARIVRVADG |
| Ga0335072_101489531 | 3300032898 | Soil | MKYMLLFWVDESAETTADEDAAMMIAVKSWVEQMT |
| Ga0335076_111894552 | 3300032955 | Soil | MKYMMLFWVDEAAEATPDEDAAVMIAVKSWVEQMTESGVLV |
| Ga0335084_115729681 | 3300033004 | Soil | MKYMMLFWVDESAQTTADEDAAVMVAVKSWVDQMTERGTIVHGGALRSAGE |
| Ga0373958_0076760_3_140 | 3300034819 | Rhizosphere Soil | MKYMMMFWVDESGETTADEDAAMMIAVKSWVDQMTERGVLVHGGAL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |