Metagenome / Metatranscriptome Family F092814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092814
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	72 residues
Representative Sequence	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRSI
Number of Associated Samples	85
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.03 %
% of genes near scaffold ends (potentially truncated)	38.32 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.075 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (24.299 % of family members)
Environment Ontology (ENVO)	Unclassified (37.383 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.402 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03401	TctC	4.67
PF01979	Amidohydro_1	1.87
PF04545	Sigma70_r4	1.87
PF13408	Zn_ribbon_recom	0.93
PF08734	GYD	0.93
PF07045	DUF1330	0.93
PF13396	PLDc_N	0.93
PF09929	DUF2161	0.93
PF00165	HTH_AraC	0.93
PF13378	MR_MLE_C	0.93
PF13924	Lipocalin_5	0.93
PF13490	zf-HC2	0.93
PF01590	GAF	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.67
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.93
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.07 %
Unclassified	root	N/A	43.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	31.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.93 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.93 %
Sphingosinicellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingosinicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella	0.93 %
Eubacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
unclassified Sphingosinicella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella	0.93 %
Acetobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.87 %
Sphingosinicella sp. CPCC 101087	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 101087	0.93 %
Acetobacterium woodii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium woodii	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10140529	Not Available	502	Open in IMG/M
3300001867\|JGI12627J18819_10043289	All Organisms → cellular organisms → Bacteria → Proteobacteria	1881	Open in IMG/M
3300005174\|Ga0066680_10577691	Not Available	705	Open in IMG/M
3300005187\|Ga0066675_11309557	Not Available	534	Open in IMG/M
3300005332\|Ga0066388_100564781	Not Available	1765	Open in IMG/M
3300005332\|Ga0066388_100945738	Not Available	1433	Open in IMG/M
3300005332\|Ga0066388_101525919	Not Available	1170	Open in IMG/M
3300005434\|Ga0070709_10861137	Not Available	714	Open in IMG/M
3300005435\|Ga0070714_100291999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1517	Open in IMG/M
3300005435\|Ga0070714_100556657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300005435\|Ga0070714_101202215	Not Available	739	Open in IMG/M
3300005435\|Ga0070714_101724644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300005435\|Ga0070714_102469490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300005436\|Ga0070713_100809362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300005436\|Ga0070713_101171665	Not Available	743	Open in IMG/M
3300005437\|Ga0070710_10024276	All Organisms → cellular organisms → Bacteria	3196	Open in IMG/M
3300005439\|Ga0070711_100142191	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300005439\|Ga0070711_100163093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1691	Open in IMG/M
3300005457\|Ga0070662_100514075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300005467\|Ga0070706_100473755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1165	Open in IMG/M
3300005471\|Ga0070698_101112574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium woodii	738	Open in IMG/M
3300005518\|Ga0070699_100378121	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300005518\|Ga0070699_101260827	Not Available	678	Open in IMG/M
3300005545\|Ga0070695_101210641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300005546\|Ga0070696_101490451	Not Available	579	Open in IMG/M
3300005713\|Ga0066905_101053581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300005764\|Ga0066903_103499408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300005764\|Ga0066903_108775377	Not Available	513	Open in IMG/M
3300006028\|Ga0070717_10530361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300006028\|Ga0070717_10634648	Not Available	969	Open in IMG/M
3300006028\|Ga0070717_11836336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300006163\|Ga0070715_10044125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingosinicellaceae → Sphingosinicella → unclassified Sphingosinicella → Sphingosinicella sp. CPCC 101087	1883	Open in IMG/M
3300006163\|Ga0070715_10403088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300006173\|Ga0070716_100173151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1410	Open in IMG/M
3300006173\|Ga0070716_101616782	Not Available	532	Open in IMG/M
3300006175\|Ga0070712_100014885	Not Available	4999	Open in IMG/M
3300006175\|Ga0070712_100062758	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300006175\|Ga0070712_101060633	Not Available	702	Open in IMG/M
3300006800\|Ga0066660_10050179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2719	Open in IMG/M
3300006845\|Ga0075421_100843933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1050	Open in IMG/M
3300006904\|Ga0075424_100957866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300007788\|Ga0099795_10537109	Not Available	549	Open in IMG/M
3300009100\|Ga0075418_10886192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300009137\|Ga0066709_103859380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300009143\|Ga0099792_10944629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300009147\|Ga0114129_10965585	Not Available	1075	Open in IMG/M
3300009147\|Ga0114129_11622420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300009156\|Ga0111538_10748069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1238	Open in IMG/M
3300009162\|Ga0075423_11595910	Not Available	701	Open in IMG/M
3300009162\|Ga0075423_12259601	Not Available	591	Open in IMG/M
3300009553\|Ga0105249_12188152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300010046\|Ga0126384_11985758	Not Available	556	Open in IMG/M
3300010366\|Ga0126379_12590485	Not Available	605	Open in IMG/M
3300010371\|Ga0134125_12124312	Not Available	611	Open in IMG/M
3300010396\|Ga0134126_12816884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010398\|Ga0126383_11499909	Not Available	764	Open in IMG/M
3300010400\|Ga0134122_11467946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300010403\|Ga0134123_11340924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300010999\|Ga0138505_100061528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300012200\|Ga0137382_10037818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2940	Open in IMG/M
3300012200\|Ga0137382_10496188	Not Available	867	Open in IMG/M
3300012202\|Ga0137363_11721129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300012203\|Ga0137399_11459381	Not Available	571	Open in IMG/M
3300012208\|Ga0137376_10538933	Not Available	1012	Open in IMG/M
3300012361\|Ga0137360_11115400	Not Available	681	Open in IMG/M
3300012582\|Ga0137358_10214622	Not Available	1312	Open in IMG/M
3300012941\|Ga0162652_100081224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300012951\|Ga0164300_10312065	Not Available	827	Open in IMG/M
3300012955\|Ga0164298_10493303	Not Available	816	Open in IMG/M
3300012958\|Ga0164299_11552734	Not Available	519	Open in IMG/M
3300012960\|Ga0164301_10843083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300012961\|Ga0164302_11761631	Not Available	521	Open in IMG/M
3300012984\|Ga0164309_10998883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300012985\|Ga0164308_10308357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1260	Open in IMG/M
3300012985\|Ga0164308_11909187	Not Available	554	Open in IMG/M
3300012987\|Ga0164307_11416577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300012988\|Ga0164306_11970393	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300015374\|Ga0132255_105196228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300018433\|Ga0066667_11323683	Not Available	630	Open in IMG/M
3300019890\|Ga0193728_1166267	Not Available	956	Open in IMG/M
3300020579\|Ga0210407_10515459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300020580\|Ga0210403_10799551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300020581\|Ga0210399_10373069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191	Open in IMG/M
3300021168\|Ga0210406_10057026	Not Available	3398	Open in IMG/M
3300021403\|Ga0210397_10985220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300021405\|Ga0210387_10987420	Not Available	738	Open in IMG/M
3300021432\|Ga0210384_10341778	Not Available	1348	Open in IMG/M
3300021475\|Ga0210392_10071493	Not Available	2205	Open in IMG/M
3300021478\|Ga0210402_10199528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1838	Open in IMG/M
3300022726\|Ga0242654_10379674	Not Available	538	Open in IMG/M
3300025910\|Ga0207684_10280026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1438	Open in IMG/M
3300025915\|Ga0207693_10450459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300025915\|Ga0207693_10460075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	994	Open in IMG/M
3300025916\|Ga0207663_10104536	All Organisms → cellular organisms → Bacteria	1909	Open in IMG/M
3300025929\|Ga0207664_10637776	Not Available	957	Open in IMG/M
3300025934\|Ga0207686_11116928	Not Available	643	Open in IMG/M
3300025972\|Ga0207668_11855405	Not Available	544	Open in IMG/M
3300026552\|Ga0209577_10757660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300026557\|Ga0179587_10627337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300027105\|Ga0207944_1020109	Not Available	579	Open in IMG/M
3300028047\|Ga0209526_10935943	Not Available	524	Open in IMG/M
3300029636\|Ga0222749_10791887	Not Available	519	Open in IMG/M
3300032174\|Ga0307470_10248448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1173	Open in IMG/M
3300032180\|Ga0307471_101189280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300032180\|Ga0307471_103640166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300032205\|Ga0307472_100803233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300032261\|Ga0306920_100245316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2673	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.85%
Host-Associated	Host-Associated	12.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.85%
Plants	Host-Associated → Plants	12.15%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.21%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.66%
Loam	Environmental → Terrestrial → Soil → Loam	38.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.35%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	29.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	24.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	5.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_101405292	3300000793	Forest Soil	MRQIISSIYGALLITIWICVMGIVIAVLDSGGPKWLLAAAGFVAATITVTFVEEFMEWRSRPRATKNALERRSI*
JGI12627J18819_100432894	3300001867	Forest Soil	MRQIISSVYGAVLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVATTVTVTLVQEFIEWRSRPRKNALEQRST*
Ga0066680_105776912	3300005174	Soil	MGAIMRQIISSVYGALLIAIWIGVMAIVIAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSALEQRSI*
Ga0066675_113095571	3300005187	Soil	MRQISSSIDGARLIAIWIGVMEIVIAVLDSGEPKWLLIVAGFVAATITVTLVQEFVEWRS
Ga0066388_1005647813	3300005332	Tropical Forest Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGGPNWLLATAGFVAATITVTLVEEFIEWRTRPSTTTSALEQRSI*
Ga0066388_1009457383	3300005332	Tropical Forest Soil	MRQIISSVYGVLLVAIWICVMGIVVAVLDSGGPRWLLAAAGFAAATITVTLVQEFIEWRSRHLGIAD*
Ga0066388_1015259191	3300005332	Tropical Forest Soil	MRQIISSVYGVLLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLIQEFVEWRSRPSTTKSALEQRSI*
Ga0070709_108611371	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLIIAGFVAAIITVTLVQEFVEWRSRPSATKSSLEQRSI*
Ga0070714_1002919992	3300005435	Agricultural Soil	MRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0070714_1005566571	3300005435	Agricultural Soil	GSQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070714_1012022153	3300005435	Agricultural Soil	LLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFTEWRSRRPRKNALEQRST*
Ga0070714_1017246441	3300005435	Agricultural Soil	MRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI*
Ga0070714_1024694902	3300005435	Agricultural Soil	LIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM*
Ga0070713_1008093623	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM*
Ga0070713_1011716651	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRGT*
Ga0070710_100242764	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0070711_1001421911	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWR
Ga0070711_1001630932	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070662_1005140752	3300005457	Corn Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070706_1004737551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAAVSTVALVEEFVERHSGPRTTKSSLEQRSI*
Ga0070698_1011125741	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	FLGAISGSQNREALMRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI*
Ga0070699_1003781213	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LLPPHFLGAISGSQNREALMRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI*
Ga0070699_1012608272	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAAVSTVALVEEFVERHSGPRTTKSSLEQ
Ga0070695_1012106411	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070696_1014904511	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0066905_1010535812	3300005713	Tropical Forest Soil	EFLDECSEMRRGYGAGLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPRKSALEQRSI*
Ga0066903_1034994081	3300005764	Tropical Forest Soil	MRQIISTIYGALLIAIWICVMGIVTAVFDSGGPKWLLAAAGFAAITIALIEEWRSRLRTKKGASAHDICGSQTPIYE*
Ga0066903_1087753772	3300005764	Tropical Forest Soil	MRQIISSVYGVLLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRS
Ga0070717_105303611	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070717_106346483	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIIFSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0070717_118363362	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070715_100441252	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0070715_104030881	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070716_1001731514	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0070716_1016167822	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SQNRGALMRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0070712_10001488510	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0070712_1000627583	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATVTVTLVQEFIEWRSGPRKNALEQRST*
Ga0070712_1010606332	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIIFSVYGAMLIAIWIGVMGTVIAVLDSDEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRST*
Ga0066660_100501793	3300006800	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRFRGSASEASPVKR*
Ga0075421_1008439332	3300006845	Populus Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRSI*
Ga0075424_1009578661	3300006904	Populus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPSTTKGALEQRSM*
Ga0099795_105371091	3300007788	Vadose Zone Soil	MRQIISSVYGALLIAIWIGVMAIVIAVLDSGEPKWLLAAAGFVAATITVTLVEEFIGWRSRPTKSALEQRS
Ga0075418_108861922	3300009100	Populus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0066709_1038593801	3300009137	Grasslands Soil	VVSEGVGMGAIMRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLIVAGFVAATITVTLVQEFVEWRSRPSATKSSLEQRST*
Ga0099792_109446291	3300009143	Vadose Zone Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVGATITVTLVQEFVEWRSRPKQRSI*
Ga0114129_109655852	3300009147	Populus Rhizosphere	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATVTVTLVQEFIEWRSRPRKNALEQRST*
Ga0114129_116224201	3300009147	Populus Rhizosphere	MRRIIFSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITITLVQEIVEWRSGPRKSALEQRST*
Ga0111538_107480693	3300009156	Populus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRST*
Ga0075423_115959103	3300009162	Populus Rhizosphere	SIYGALLIAIWIGVMAIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRSI*
Ga0075423_122596011	3300009162	Populus Rhizosphere	MRRIIFSVYGALLIAIWICVMGIVNAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNA
Ga0105249_121881521	3300009553	Switchgrass Rhizosphere	PHFLSGIQGSQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0126384_119857581	3300010046	Tropical Forest Soil	MRQIIFSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLIQEFVEWRSDPRKSALEQRSI*
Ga0126379_125904853	3300010366	Tropical Forest Soil	MRQIISIIYDVLLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVGATITVTLVQEFIEWRSRHLGIAD*
Ga0134125_121243122	3300010371	Terrestrial Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRGT*
Ga0134126_128168841	3300010396	Terrestrial Soil	SQNRGALMRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0126383_114999092	3300010398	Tropical Forest Soil	MRQIISSVYGGLLIAIWIGVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRARPTKSALERKSI*
Ga0134122_114679461	3300010400	Terrestrial Soil	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM*
Ga0134123_113409241	3300010403	Terrestrial Soil	MRQIISSVYGVLLIAIWIGVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST*
Ga0138505_1000615281	3300010999	Soil	MRQIISTIYGALLIAIWIGVMGTVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSATKSSLEQRSI*
Ga0137382_100378181	3300012200	Vadose Zone Soil	MRQIISSVYGALLIAIWLCVMGIVIAVLDSGEPTWLLVAAAFVGATITVTLVEEFVGWRSRPSTTKSA
Ga0137382_104961883	3300012200	Vadose Zone Soil	MRQIISSVYGALLIAIWMCVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWCSGPRKSALEQRST*
Ga0137363_117211291	3300012202	Vadose Zone Soil	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAAVSTVALVEEFVEWPSGPGTTKSSLEQGSI*
Ga0137399_114593812	3300012203	Vadose Zone Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRST*
Ga0137376_105389332	3300012208	Vadose Zone Soil	MRQIISSVYGALLIAIWLCVMGIVIAVLDSGEPTWLLVAAAFVGATITVTLVEEFIEWRSRPRKSALEQRST*
Ga0137360_111154001	3300012361	Vadose Zone Soil	MRQIISIIYGVLLIAIWICVMGIVIAVLDSGGPKWLLLAGGFVAVVSTVALVEEFLEWHSRPTSPVKRQLLPPTA*
Ga0137358_102146222	3300012582	Vadose Zone Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATVTVTLVQEFIEWRSRPSATKSSLEQRST*
Ga0162652_1000812241	3300012941	Soil	MRQIISSIYGALLIVIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSATKSSLEQRSI*
Ga0164300_103120652	3300012951	Soil	SSIYGALLIAIWICVMGIVIAVLDSGEPKWLLAAAGFVAATITVTLVQELIEWRSRPTKSALERRSI*
Ga0164298_104933032	3300012955	Soil	VYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST*
Ga0164299_115527341	3300012958	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0164301_108430831	3300012960	Soil	MRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0164302_117616312	3300012961	Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNAL
Ga0164309_109988831	3300012984	Soil	MYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRPRKNALEQRNI*
Ga0164308_103083571	3300012985	Soil	MRQIISSVYGALLFSIWIGVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM*
Ga0164308_119091872	3300012985	Soil	KEVRTGGTLMRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0164307_114165771	3300012987	Soil	PEWYLSKSEPGALMRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALEQRSI*
Ga0164306_119703931	3300012988	Soil	MRQIISSIYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV*
Ga0132255_1051962282	3300015374	Arabidopsis Rhizosphere	MRQIIFSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWGSRPRKNALEQRSI*
Ga0066667_113236832	3300018433	Grasslands Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFVEWRSRPRK
Ga0193728_11662672	3300019890	Soil	MRQIISSVYAALLFAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIDWRSRPSTTKSSLEQRSI
Ga0210407_105154591	3300020579	Soil	MRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0210403_107995511	3300020580	Soil	MRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLAAVGFVAATLTVTLVQEFVEWRFRPKQRSV
Ga0210399_103730692	3300020581	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPKKNALEQRST
Ga0210406_100570263	3300021168	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRST
Ga0210397_109852201	3300021403	Soil	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPTKSALERRSI
Ga0210387_109874201	3300021405	Soil	RSQNRGALMRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST
Ga0210384_103417781	3300021432	Soil	MRQIISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPKKN
Ga0210392_100714932	3300021475	Soil	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0210402_101995283	3300021478	Soil	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRPSTTKSALEQRSM
Ga0242654_103796741	3300022726	Soil	LMRQIISSVYGALLISIWICVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0207684_102800262	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWIGVMGIVVAVLDSPEMLIAGGLVAAILTVALAQEFVEWRSRPRTTKSSLEQRSI
Ga0207693_104504592	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPSTTKSALEQRSM
Ga0207693_104600753	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRK
Ga0207663_101045362	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRQIISSVYGVLLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQRGT
Ga0207664_106377762	3300025929	Agricultural Soil	MRQIIFSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST
Ga0207686_111169282	3300025934	Miscanthus Rhizosphere	MRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSCPRKSALEQRST
Ga0207668_118554051	3300025972	Switchgrass Rhizosphere	MRQIISSIYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFVEWRSRSRGSVSEASPVKR
Ga0209577_107576601	3300026552	Soil	NRGALMRQIISSIYGALLIAIWIGVMAIVIAVLDSGEPKWLLAAAGFVAATITVTLVEEFIGWRSRPTKSALEQRSIWS
Ga0179587_106273371	3300026557	Vadose Zone Soil	IISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATLTVTLVQEFVEWRSRPKQRSI
Ga0207944_10201091	3300027105	Forest Soil	MRQIISSVYGALLIAIWICVMGIVVAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRTRKNALEQRST
Ga0209526_109359432	3300028047	Forest Soil	ISSVYGALLIAIWIGVMGTVIAVLDSGEPKWLLVVAGFVAATITVTLVQEFIEWRSRPRKNALEQTST
Ga0222749_107918872	3300029636	Soil	AISGSQNRGALMRQIVSSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPRKNALEQRST
Ga0307470_102484484	3300032174	Hardwood Forest Soil	QIISSIYGALLIAIWIGVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0307471_1011892801	3300032180	Hardwood Forest Soil	LMRQIISSVYGALLIAIWICVMGIVIAVLDSGEPKWLLVAAGFVAATITVTLVQEFIEWRSRPSTTKGALEQRSM
Ga0307471_1036401661	3300032180	Hardwood Forest Soil	IAIWICVKGIVVAVVDSGGPKWLLTAAGFVAATITVTLVEEFIGWRSRPSATKSSLEQRS
Ga0307472_1008032333	3300032205	Hardwood Forest Soil	VGDGGLLMRQIISSIYGALLIAIWIGVMGIVVAVLDSGEPKWLLVAAGFVAATITVTLVQELIEWRSRPTKSALERRSI
Ga0306920_1002453165	3300032261	Soil	MRQIISIIYGVLMIAVWICVMGIVIAVLDGGDPQMLVAGGFVAAVSTVAVAQEFVEWRSHPRTSHITQSTVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092814

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences