Metagenome Family F092889

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092889
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	63 residues
Representative Sequence	VNPKTIVAAPAAAELAEVDSECTPMPIESQVTRGAWTREIEELCRALEAQQRAHFPRIDAEEK
Number of Associated Samples	88
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.29 %
% of genes near scaffold ends (potentially truncated)	35.51 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.028 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.234 % of family members)
Environment Ontology (ENVO)	Unclassified (29.907 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.46% β-sheet: 0.00% Coil/Unstructured: 61.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04392	ABC_sub_bind	6.54
PF01738	DLH	1.87
PF03631	Virul_fac_BrkB	1.87
PF14329	DUF4386	1.87
PF13442	Cytochrome_CBB3	1.87
PF04227	Indigoidine_A	0.93
PF13847	Methyltransf_31	0.93
PF01019	G_glu_transpept	0.93
PF05023	Phytochelatin	0.93
PF16123	HAGH_C	0.93
PF02371	Transposase_20	0.93
PF00211	Guanylate_cyc	0.93
PF01471	PG_binding_1	0.93
PF05988	DUF899	0.93
PF00004	AAA	0.93
PF14023	DUF4239	0.93
PF10118	Metal_hydrol	0.93
PF11379	DUF3182	0.93
PF01797	Y1_Tnp	0.93
PF09948	DUF2182	0.93
PF03466	LysR_substrate	0.93
PF01814	Hemerythrin	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.54
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.87
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.93
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.93
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG2313	Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)	Nucleotide transport and metabolism [F]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.96 %
Unclassified	root	N/A	28.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.96 %
Unclassified	root	N/A	28.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.03 %
Unclassified	root	N/A	28.04 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.55 %
Unclassified	root	N/A	28.04 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	54.21 %
Unclassified	root	N/A	28.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.87 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	48.60 %
Unclassified	root	N/A	28.04 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.80 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.93 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	47.66 %
Unclassified	root	N/A	28.04 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.93 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	47.66 %
Unclassified	root	N/A	28.04 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.93 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.93 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	47.66 %
Unclassified	root	N/A	28.04 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Acidithiobacillus ferriphilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferriphilus	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.93 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	47.66 %
Unclassified	root	N/A	28.04 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.93 %
Acidithiobacillus ferriphilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferriphilus	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.93 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104122604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	605	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105846236	Not Available	745	Open in IMG/M
3300000559\|F14TC_100465744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1574	Open in IMG/M
3300000878\|AL9A1W_1004092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	638	Open in IMG/M
3300001431\|F14TB_107718264	Not Available	559	Open in IMG/M
3300002245\|JGIcombinedJ26739_100263403	Not Available	1610	Open in IMG/M
3300002245\|JGIcombinedJ26739_101509841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	567	Open in IMG/M
3300004092\|Ga0062389_102793214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	652	Open in IMG/M
3300004635\|Ga0062388_101861598	Not Available	619	Open in IMG/M
3300005166\|Ga0066674_10039706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2101	Open in IMG/M
3300005175\|Ga0066673_10475048	Not Available	736	Open in IMG/M
3300005178\|Ga0066688_10523838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	762	Open in IMG/M
3300005181\|Ga0066678_10606821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	728	Open in IMG/M
3300005184\|Ga0066671_10735742	Not Available	635	Open in IMG/M
3300005187\|Ga0066675_10073726	All Organisms → cellular organisms → Bacteria → Proteobacteria	2180	Open in IMG/M
3300005332\|Ga0066388_102080602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1021	Open in IMG/M
3300005406\|Ga0070703_10303122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	667	Open in IMG/M
3300005437\|Ga0070710_10175469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1338	Open in IMG/M
3300005440\|Ga0070705_100196361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1380	Open in IMG/M
3300005445\|Ga0070708_100740174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	925	Open in IMG/M
3300005445\|Ga0070708_101520584	Not Available	623	Open in IMG/M
3300005446\|Ga0066686_10677670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	698	Open in IMG/M
3300005450\|Ga0066682_10810679	Not Available	565	Open in IMG/M
3300005450\|Ga0066682_10837328	Not Available	553	Open in IMG/M
3300005467\|Ga0070706_100187449	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300005467\|Ga0070706_101329849	Not Available	659	Open in IMG/M
3300005468\|Ga0070707_100021468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6103	Open in IMG/M
3300005471\|Ga0070698_100636800	Not Available	1007	Open in IMG/M
3300005549\|Ga0070704_100199254	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300005552\|Ga0066701_10071491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1967	Open in IMG/M
3300005559\|Ga0066700_10005283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6244	Open in IMG/M
3300005560\|Ga0066670_10058739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2025	Open in IMG/M
3300005569\|Ga0066705_10084534	All Organisms → cellular organisms → Bacteria	1859	Open in IMG/M
3300005574\|Ga0066694_10119723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferriphilus	1238	Open in IMG/M
3300005574\|Ga0066694_10367328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	680	Open in IMG/M
3300005995\|Ga0066790_10055421	All Organisms → cellular organisms → Bacteria → Proteobacteria	1713	Open in IMG/M
3300006046\|Ga0066652_100114952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2198	Open in IMG/M
3300006791\|Ga0066653_10648091	Not Available	540	Open in IMG/M
3300006796\|Ga0066665_10536791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	953	Open in IMG/M
3300006796\|Ga0066665_11261497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	566	Open in IMG/M
3300006797\|Ga0066659_11837340	Not Available	513	Open in IMG/M
3300006800\|Ga0066660_11624892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	513	Open in IMG/M
3300006914\|Ga0075436_100230682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1315	Open in IMG/M
3300007076\|Ga0075435_100217603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1621	Open in IMG/M
3300007255\|Ga0099791_10434453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	634	Open in IMG/M
3300007265\|Ga0099794_10693125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	542	Open in IMG/M
3300007265\|Ga0099794_10779547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	511	Open in IMG/M
3300009012\|Ga0066710_100487126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1856	Open in IMG/M
3300009012\|Ga0066710_102628095	Not Available	722	Open in IMG/M
3300009090\|Ga0099827_11980729	Not Available	506	Open in IMG/M
3300009137\|Ga0066709_100211528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2558	Open in IMG/M
3300009147\|Ga0114129_10254078	Not Available	2358	Open in IMG/M
3300009147\|Ga0114129_12641352	Not Available	599	Open in IMG/M
3300010320\|Ga0134109_10038569	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300010343\|Ga0074044_10918287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	573	Open in IMG/M
3300011270\|Ga0137391_11366256	Not Available	555	Open in IMG/M
3300012199\|Ga0137383_10883185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	653	Open in IMG/M
3300012199\|Ga0137383_11086129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	580	Open in IMG/M
3300012205\|Ga0137362_11153228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	658	Open in IMG/M
3300012207\|Ga0137381_10220985	All Organisms → cellular organisms → Bacteria → Proteobacteria	1644	Open in IMG/M
3300012207\|Ga0137381_11057801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	699	Open in IMG/M
3300012210\|Ga0137378_10087850	All Organisms → cellular organisms → Bacteria → Proteobacteria	2840	Open in IMG/M
3300012210\|Ga0137378_10105805	All Organisms → cellular organisms → Bacteria → Proteobacteria	2587	Open in IMG/M
3300012210\|Ga0137378_10414207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1250	Open in IMG/M
3300012211\|Ga0137377_10309932	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300012285\|Ga0137370_10080402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1806	Open in IMG/M
3300012349\|Ga0137387_11119791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	560	Open in IMG/M
3300012349\|Ga0137387_11206902	Not Available	534	Open in IMG/M
3300012353\|Ga0137367_10891080	Not Available	613	Open in IMG/M
3300012354\|Ga0137366_10706617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	718	Open in IMG/M
3300012356\|Ga0137371_10547038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	891	Open in IMG/M
3300012363\|Ga0137390_10106567	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300012363\|Ga0137390_10211639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1925	Open in IMG/M
3300012363\|Ga0137390_10673831	Not Available	998	Open in IMG/M
3300012685\|Ga0137397_10476463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	930	Open in IMG/M
3300012923\|Ga0137359_11665086	Not Available	525	Open in IMG/M
3300012927\|Ga0137416_11783130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	562	Open in IMG/M
3300012976\|Ga0134076_10057300	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1481	Open in IMG/M
3300015162\|Ga0167653_1039506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	864	Open in IMG/M
3300015371\|Ga0132258_11818023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1535	Open in IMG/M
3300015372\|Ga0132256_101869836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	708	Open in IMG/M
3300015374\|Ga0132255_100926405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1304	Open in IMG/M
3300015374\|Ga0132255_101210050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1138	Open in IMG/M
3300017997\|Ga0184610_1236033	Not Available	609	Open in IMG/M
3300018054\|Ga0184621_10170477	Not Available	783	Open in IMG/M
3300018056\|Ga0184623_10238646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	831	Open in IMG/M
3300018081\|Ga0184625_10108483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1438	Open in IMG/M
3300018084\|Ga0184629_10169666	Not Available	1116	Open in IMG/M
3300018431\|Ga0066655_10654986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	710	Open in IMG/M
3300018433\|Ga0066667_10321761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1214	Open in IMG/M
3300018482\|Ga0066669_11806430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	565	Open in IMG/M
3300020018\|Ga0193721_1123671	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300021413\|Ga0193750_1013059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2069	Open in IMG/M
3300021478\|Ga0210402_10091903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2714	Open in IMG/M
3300021478\|Ga0210402_10142754	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300022534\|Ga0224452_1284190	Not Available	505	Open in IMG/M
3300025910\|Ga0207684_10404598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1173	Open in IMG/M
3300026271\|Ga0209880_1085391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	652	Open in IMG/M
3300026499\|Ga0257181_1048902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	700	Open in IMG/M
3300026538\|Ga0209056_10412930	Not Available	815	Open in IMG/M
3300027846\|Ga0209180_10776395	Not Available	515	Open in IMG/M
3300027902\|Ga0209048_10185051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1526	Open in IMG/M
3300027915\|Ga0209069_10589391	Not Available	639	Open in IMG/M
3300028047\|Ga0209526_10032560	Not Available	3667	Open in IMG/M
3300031170\|Ga0307498_10084766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	944	Open in IMG/M
3300034176\|Ga0364931_0321491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	515	Open in IMG/M
3300034354\|Ga0364943_0118566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	936	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.52%
Host-Associated	Host-Associated	7.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.18%
Aquatic	Environmental → Aquatic	9.35%
Plants	Host-Associated → Plants	7.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.31%
Sediment	Environmental → Aquatic → Sediment	6.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.67%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Floodplain	Environmental → Terrestrial → Floodplain	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.68%
Loam	Environmental → Terrestrial → Soil → Loam	16.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.87%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.28%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.87%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026271	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1041226042	3300000364	Soil	MNPETIEAGSVADELTKVETECPPMRTEPRVARGVWTRDIEALCRALEAQQRAHFPSSGAEKK*
INPhiseqgaiiFebDRAFT_1058462361	3300000364	Soil	PKPIVAAPAATHPAEVDSECTPIPIESQVTRGAWTRAIEELCRALEAQQRAHYPSTAAEDK*
F14TC_1004657442	3300000559	Soil	LRTYIVKPKTIVAAPAAADPAEVNSECTPIPIESQVTRGAWTREIEELCRALEAQQKPHYPSPDAEEK*
AL9A1W_10040923	3300000878	Permafrost	MNPKTIVAAPAAAGPAEVDSGWTPIPIESQVTRGAWTREIEELCRALAAQQRVHCPSTDAEEK*
F14TB_1077182641	3300001431	Soil	IVAAPAAADPAEVNSECTPIPIESQVTRGAWTREIEELCRALEAQQKPHYPSPDAEEK*
JGIcombinedJ26739_1002634032	3300002245	Forest Soil	MNAKAIVASPTDTELAQFDSECSPMPIESPAAHGAWTHDIEALCRALDAQQRSALPKS*
JGIcombinedJ26739_1015098411	3300002245	Forest Soil	MDAKTIVASPTDAELVQVDSECSPMPIESPAAHGVWTHDIEALCRALDAQQRSALPKS*
Ga0062389_1027932141	3300004092	Bog Forest Soil	MNQKTIVVAPTAAELAKVDSECSPTPIESPVARGVWTRDIEALCRALEAQQRAHFPRIDAEET*
Ga0062388_1018615982	3300004635	Bog Forest Soil	TIVAAPTAAELAKVDSECMPMPIESPVTRGAWTREIEELCRALEAQQRAHFPRIDAEEK*
Ga0066674_100397064	3300005166	Soil	MNPQTNVAASAADELAKVDSECSPIPVESPVARGVWTRDIEALCRALEAQQRAHFPSIDAEEK*
Ga0066673_104750482	3300005175	Soil	KTIVAAPAAAELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRARFPRIDAKEK
Ga0066688_105238382	3300005178	Soil	FCGHLSMNAKTIVAAPAGAELATVDSECSPMPIEAPVARGVWTRDIEALCRALEAQQRAHFPSTDSEKK*
Ga0066678_106068212	3300005181	Soil	IVAAPAGAELATVDSECSPMPIEAPVARGVWTRDIEALCRALEAQQRAHFPSTDSEKK*
Ga0066671_107357421	3300005184	Soil	MVNPKTTVAAPAAAELAGVDSECTPMPIESQMTRGAWTREIDELCRALEAQRRT
Ga0066675_100737261	3300005187	Soil	MNPTAIVAAPTAGELAKVDSECTPMPIESLVTRGAWTREIEELCRALEAQQRARFPRTDAEEK*
Ga0066388_1020806021	3300005332	Tropical Forest Soil	MGIIGGGVNPVAALATADEPGEVDSECTPIAIESQATCGAWTREIEELCRALEAQQRERHPGTDADGK*
Ga0070703_103031221	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKIIVAAPAATELAEVDSECAPIPIESQVTRGAWTREIEELCRALEAQQKAHFSSIDAGKK*
Ga0070710_101754693	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKTIVAASTAAELAEADPECSPSLIESPVARGWTRDVEALCRALDAQQRAHFPKIDAEEK*
Ga0070705_1001963612	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKIVVAAPAATELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQKAHFSSIDAGKK*
Ga0070708_1007401741	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKTIVAAPAAAELAEVDSECTPIPVESQVTRGAWTREIEELCRALEAQRRAHLPRRDAEEK*
Ga0070708_1015205841	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKIIVAAPAATELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQKAHLPSIDAGKK*
Ga0066686_106776701	3300005446	Soil	MNAKTIVAAPAGAELATVDSECSPMPIEAPVARGVWTRDIEALCRALEAQQRAHFPSTDSEKK*
Ga0066682_108106791	3300005450	Soil	PKTVVAAPAAVELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPSIDAEEK*
Ga0066682_108373281	3300005450	Soil	LSRRTGAGQGSVQTLTLIVDPKTILAAPAAADPAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRAHVPSTDAEKK*
Ga0070706_1001874491	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNPTAIVAAPMAAELAKVDSECTPMPIESLVTRGAWTREIEELCRALEAQQRARFPRTDAEEK*
Ga0070706_1013298491	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKTIVAAPAAAGLAEVDSKCTPIPIESEVTRGAWTREIEELCRALEAQQRARFPRIDAEEK*
Ga0070707_1000214683	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKIVVAAPAATELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQKAHLPSIDAGKK*
Ga0070698_1006368001	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKTIVAASTAAELAKVDPECSPRPIESPVACGWTRDVEALCRALDAQQRAHFPKIDAEEK*
Ga0070704_1001992543	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VNPKTIVAAAPVAKLAEVDSECTPIPIESQVTRGAWTREIEELCRALDAQQRAHFRRIDAEEK*
Ga0066701_100714912	3300005552	Soil	MNPKTIVAAPTPAELAKDDSECPPIPIESAVVRGAWTREIEELCRALEAQQRAHLPRIDAEKK*
Ga0066700_100052834	3300005559	Soil	MVNPKTVVAAPAATELAAVDSECTPIPPESQVTRGAWTREIEELCRALEAQQKAHLPRIDAEEK*
Ga0066670_100587393	3300005560	Soil	MVNPKTIVAAPAAAELAEVDSECTPIPIESQVTRGAWTREIEELCRALDAQQRTHFPSTEAEKK*
Ga0066705_100845341	3300005569	Soil	MNPTAIVAAPTAAELAKVDSECTPMPIESPVTRGAWTREIEELCRALEAQQRARFPRIDAKEK*
Ga0066694_101197231	3300005574	Soil	MNPQTNVAASAADELAKVDSECSPIPVESPVARGVWTRDIEALCRALEAQQRAHFPSIDAEE
Ga0066694_103673282	3300005574	Soil	MNPKTIVAAATTAELLEVEYECSPTPLESPVARGVWTRDIEALCRALEAQQRAHFPSVDTERK*
Ga0066790_100554211	3300005995	Soil	VNPQTIEAVSVAAELTKVDSECSPIQAEPPVTRGVWTRDIEALCRALEAQQRAHF
Ga0066652_1001149522	3300006046	Soil	VNPKTVVAAPAAVELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPSIDAEEK*
Ga0066653_106480912	3300006791	Soil	SETNALRQPRAFNFCGTLIVNPKTIVAAPAAAELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRARLPRIDAEEK*
Ga0066665_105367911	3300006796	Soil	APAGAELATVDSECSPMPIEAPVARGVWTRDIEALCRALEAQQRAHFPSTDSEKK*
Ga0066665_112614971	3300006796	Soil	LRQPRAFNFCGALIVNPKTVVAAPAAVELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPNID
Ga0066659_118373401	3300006797	Soil	FMVNPKTIVAAPAAAELAEVDSECTPIPIESQVTRGAWTREIEELCRALDAQQRTHFPSTEAEKK*
Ga0066660_116248922	3300006800	Soil	MNPKTTVAVPAAAEPAKDDSECPPMAIESPVVRGVWTRDIEELCRALDAQQRAHFPISDAEEK*
Ga0075436_1002306821	3300006914	Populus Rhizosphere	ALRQPRAFNFCGALIVNPKTVVAAPAATELAAVDSECTPIPPEPQVTRGAWTREIEELCRALDAQQKAHLPRIDAEEK*
Ga0075435_1002176033	3300007076	Populus Rhizosphere	FNFCGALIVNPKTVVAAPAATELAEVDAECTPIPPESQVPRGAWTREIEELCRALDAQQKAHLPRIDAEEK*
Ga0099791_104344531	3300007255	Vadose Zone Soil	MNPQTIEAVSVAAELTQVDSECSPTRTEPPVARGVWTRDIEALCRALEAQQRAHFPSIAAEEK*
Ga0099794_106931251	3300007265	Vadose Zone Soil	MNPQTIEAVSVATELTKVDSEYSPIRTEPPVARGVWTRDIEALCRALEAQQRAHFPSIAAEEK*
Ga0099794_107795472	3300007265	Vadose Zone Soil	VNPKTTVAAPPAADPAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRAHFP
Ga0066710_1004871261	3300009012	Grasslands Soil	MNAKTIVAAPAGAELATVDSECSPMPIEAPVARGVWTRDIEALCRALEAQQRAHFPSTDSEKK
Ga0066710_1026280952	3300009012	Grasslands Soil	MNPTAIVAAPTAAELAKVDSECTPMPIESPVTRGAWTREIEELCRALEAQQRARFPRIDAKEK
Ga0099827_119807291	3300009090	Vadose Zone Soil	KTTVAAPPAAELAEVDSECTPIPVESQVTRGAWTREIEELCRALEAQRRAHLPRIDAEEK
Ga0066709_1002115282	3300009137	Grasslands Soil	VNPKTVVAAPAAVELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPNIDAEEK*
Ga0114129_102540782	3300009147	Populus Rhizosphere	MMNPKAIVAAPAAAELAEVDAESMPIPIESQVTRGAWTREIEELCRALEAQQRAHVPRTDAEKK*
Ga0114129_126413521	3300009147	Populus Rhizosphere	VVAAPAATELAAVDSECTPIPPESQVTRGAWTREIEELCRALDAQQKAHLPRIDAEEK*
Ga0134109_100385692	3300010320	Grasslands Soil	VNPKTIVAAPATAELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRTHVPSIDAEEK*
Ga0074044_109182871	3300010343	Bog Forest Soil	MNPKTIVAAPTAAELAKVDSECSLIPIESPVARGVWTRDIEALCRALEAQQRAHFPRIDAEEK*
Ga0137391_113662561	3300011270	Vadose Zone Soil	VNPKTIVAAPAAAGLAEVDSEYTPMPIESQVTRGAWTREIEELCRALEAQQRAHFPSIDAEEK*
Ga0137383_108831851	3300012199	Vadose Zone Soil	RQPRAFNFFRCLSMNAKTVQAAPTGAELAKGDSECSAMPIEVPVARGVWTRDIEALCRALEAQQRAHFPSTDTEKK*
Ga0137383_110861291	3300012199	Vadose Zone Soil	MNPQTIEAVSVAAELTQVDSEYSPTRTEPPVARGVWTRDIEALCRALEAHQRAQFPRIVPEER*
Ga0137362_111532282	3300012205	Vadose Zone Soil	MNPQTIEAVSVAAELTQVDSECLPTRTEPPVARGVWTRDIEALCRALEAHQRAQFPRIAPEEK*
Ga0137381_102209852	3300012207	Vadose Zone Soil	MVNPKTIVAVPAAAELAEVDSECTLIPIESQVTRGAWTREIEELCRALEAQQRARFPRTDAEKK*
Ga0137381_110578011	3300012207	Vadose Zone Soil	MNPQTIEAVSVAAELTQVDSEYSPTRTEPPVARGVWTRDIEALCRALEAHQRARFPSIVAE*
Ga0137378_100878501	3300012210	Vadose Zone Soil	MVNPKTIVAAPAAAELAEVDSECSPIPIESQMTRGAWTREIEELCRALEAQQRTHFPSTEAEKK*
Ga0137378_101058053	3300012210	Vadose Zone Soil	RSVRLCGTLIVNPKTTVAAPPAADPAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRVHPPSTDAEEK*
Ga0137378_104142071	3300012210	Vadose Zone Soil	MNAKTVEAAPTGAELAKVDSECSAMPIEVPVARGVWTRDIEALCRALEAQQRAHFPSTDTEKK*
Ga0137377_103099322	3300012211	Vadose Zone Soil	MNPQTIAAASAADELAKVDSECSPMPVESPVARGVWTRDIEALCRALEAQQRA
Ga0137370_100804023	3300012285	Vadose Zone Soil	VNPKTVVAAPAAAELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPSIDAEEK*
Ga0137387_111197912	3300012349	Vadose Zone Soil	MNPQTIEAVSVAAELTQVDSEYLQTRTEPPVARGVWTRDIEALCRALEAHQRAQFPRIVPEEK*
Ga0137387_112069021	3300012349	Vadose Zone Soil	VNPKTIVAAPAAAELAEVDSEKCTPIPIESQVTRGAWTREIEELCRALEAQQRAHFPIIGAEKK*
Ga0137367_108910801	3300012353	Vadose Zone Soil	MVNPKTIVAAPAAAELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRAHVPSTDAEKK*
Ga0137366_107066172	3300012354	Vadose Zone Soil	MNPQANVAASAADELAKVDSECSPIPVESPVARGVWTRDIEALCRALEAQQRAHFPSIDAEEK*
Ga0137371_105470382	3300012356	Vadose Zone Soil	PAATELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPSIDAEEK*
Ga0137390_101065675	3300012363	Vadose Zone Soil	MNPKTIVAASTAAELAEVDPECSPRPIESPVARGWTRDVEALCRALDAQQRAHFPKIAAEEK*
Ga0137390_102116392	3300012363	Vadose Zone Soil	MNAKTIVASPTGAELAKVDSERSPMPIESPVARGVWTHDVEALCRALAAQQRAHFP
Ga0137390_106738311	3300012363	Vadose Zone Soil	VNPKTIVAAPAAAELAEVDSECTPMPIESQVTRGAWTREIEELCRALEAQQRAHFPRIDAEEK*
Ga0137397_104764631	3300012685	Vadose Zone Soil	MNPQTIEAVSVATELTKVDSECSPIRTEPAVARGVWTRDIEALCRALEAQQRAHFPSIAAEEK*
Ga0137359_116650861	3300012923	Vadose Zone Soil	AADPAEVDSECTPVPIESQVTRGAWTREIEELCRALEAQQRVHFPSIGAEKK*
Ga0137416_117831301	3300012927	Vadose Zone Soil	GRISMNPQTIEAVSVATELTKVDSECSPIRTEPPVARGVWTRDIEALCRALEAQQRAHFPSIAAEEK*
Ga0134076_100573003	3300012976	Grasslands Soil	NALRRPRAFNFCGALIVNPKTVVAAPAATELAAVDSECTPIPPESQVTRGAWTREIEELCRALEAQQKAHLPRIDAEEK*
Ga0167653_10395062	3300015162	Glacier Forefield Soil	MNPKTIVAASAAAELSNVDAERAPLAAESPVSRAWTRDVEALCRALDAQQRAHAPRIDAEER*
Ga0132258_118180232	3300015371	Arabidopsis Rhizosphere	MNPETIEAVAVADELSKVETECPPVRTEPRVARGAWTRDIEALCRALEAQQRAHFPSVAAEKK*
Ga0132256_1018698362	3300015372	Arabidopsis Rhizosphere	FCGTLIVNPKTTVAAPPAADPAEVASECTPIPIESPVTRGAWTREIEELCSALEAQRAHLPRIEAEEK*
Ga0132255_1009264052	3300015374	Arabidopsis Rhizosphere	MNPETIEAVAVADELSKVETECPPVRTEPRVARGAWTRDIEALCRALEAQQRAHFPSVAAGKK*
Ga0132255_1012100501	3300015374	Arabidopsis Rhizosphere	MNPQTIEAVSVAADCTKVDSECSPIRTEPPVARGVWTRDIEALCRALEAQQRAHFPSSAAEKK*
Ga0184610_12360331	3300017997	Groundwater Sediment	VNPKTIVAAPPAAMLAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQRAHFPSIDAEEK
Ga0184621_101704771	3300018054	Groundwater Sediment	VNPKTIVAAPAAAELAEVDSECMPIPIASQVTRGAWTREIEELCRALEAQQRAHFPRIDAEEK
Ga0184623_102386461	3300018056	Groundwater Sediment	MNPKTIVAAPPAAKLAEVDSECTPIPIESQVTRGAWTREIEELCRALDAQQKAHSPRIDADEK
Ga0184625_101084831	3300018081	Groundwater Sediment	TIVAAPPAARLAEVESESTPIESQVTRGAWTREIEELCRALDAQQKAHSPRIDEDEK
Ga0184629_101696661	3300018084	Groundwater Sediment	VNPKTIVAAPPAARLAEVDSEGTPIPIESQVTRGAWTREIEELCRALDAQQKAHSPRIDEDEK
Ga0066655_106549861	3300018431	Grasslands Soil	HISMNPQTNVAASAADELAKVDSECSPIPVESPVARGVWTRDIEALCRALEAQQRAHFPSIDAEEK
Ga0066667_103217611	3300018433	Grasslands Soil	MNPQTNVAASAADELAKVDSECSPIPVESPVARGVWTRDIEALCRALEAQQRAHFPSIDAEEK
Ga0066669_118064303	3300018482	Grasslands Soil	VNPKTVVAAPAAVELAEVDSKCTPTPVESQVTRGAWTREIEELCRALEAQQKVRSPSI
Ga0193721_11236712	3300020018	Soil	RPRAFNSCGTLIVNPKTIVAAPAAPELAEVDSECTPIPIASQVTRGAWTREIEELCRALEAQQRAHFPRIDAEEK
Ga0193750_10130592	3300021413	Soil	MDPKTIVAAPTGAEVAKVESERSPIPIEPAAARGVWTRDIEALCRALEAQQRAHFPRIDTEKK
Ga0210402_100919032	3300021478	Soil	MNPKTIVAASTAVELAEADPECSPSLIESPVARGWTRDVEALCRALDAQQRTHFPKIDAEEK
Ga0210402_101427542	3300021478	Soil	MNPKSIVAALTAAELVKVDSECPAIPIESLLARDVWTRDIEALCRALDAQQRAHFPGIDAEEK
Ga0224452_12841902	3300022534	Groundwater Sediment	KTIVAAPAAAELAEVDSECTPIPIESQVTRGAWTREIEELCRALDAQQRAHFRRIDAEEK
Ga0207684_104045981	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PAATELAEVDSECTPIPIESQVTRGAWTREIEELCRALEAQQKAHFSSIDAGKK
Ga0209880_10853911	3300026271	Soil	MNPKTIVAASTAAELAEVAPECSPIPIESPVARTWTRDVDALCRALEAQQRAH
Ga0257181_10489021	3300026499	Soil	MNPKTIVAAPTAAELAKGDSECSPILIESAVARGVWTRDIEALCRALEAQQRAHFPSIDAEEK
Ga0209056_104129301	3300026538	Soil	HCDSRAPSTFAGHLSMNPTAIVAAPTAAELAKVDSECTPMPIESPVTRGAWTREIEELCRALEAQQRARFPRIDAKEK
Ga0209180_107763951	3300027846	Vadose Zone Soil	FNFCGTLIVNPKTVVAAPAATELAEVDSECTPIPPESQVPRGAWTREIEELCRALEAQQRAHLPRIDAEEK
Ga0209048_101850511	3300027902	Freshwater Lake Sediment	MDKETVAAAPMADGVAELDSGCTPVITASPVARGAWTRDIEALCRALDAQQRAHFPSTDEANK
Ga0209069_105893912	3300027915	Watersheds	MNPQTAVAESTGAELAEVDTESSPTQIESPVAHGVWTRDVEALCRALETQQRAHFRSNDAPEK
Ga0209526_100325604	3300028047	Forest Soil	MDAKTIVASPTDAELVQVDSECSPMPIESPAAHGVWTHDIEALCRALDAQQRSALPKS
Ga0307498_100847662	3300031170	Soil	MDPETIEASAVADELSRVEADCPPMRTEPRVACGVWTRDIEALCRALDAQQRAHFPSTAGEKK
Ga0364931_0321491_46_237	3300034176	Sediment	MNPQTIVAVSVSAEITKVDCECSPIRTEPPVARGVWTRDIEALCRALEAQQRVHVPSIDAEEK
Ga0364943_0118566_472_657	3300034354	Sediment	VNPKTIVAAPPAARLAEVESESTPIESQVTRGAWTREIEELCRALDAQQKAHSPRIDEDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092889

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences