Metagenome / Metatranscriptome Family F092896

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092896
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	75 residues
Representative Sequence	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV
Number of Associated Samples	85
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.79 %
% of genes near scaffold ends (potentially truncated)	21.50 %
% of genes from short scaffolds (< 2000 bps)	84.11 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.486 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (35.514 % of family members)
Environment Ontology (ENVO)	Unclassified (43.925 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.664 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.96% β-sheet: 0.00% Coil/Unstructured: 49.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01381	HTH_3	41.12
PF13560	HTH_31	1.87
PF02518	HATPase_c	1.87
PF03401	TctC	0.93
PF13460	NAD_binding_10	0.93
PF13676	TIR_2	0.93
PF07690	MFS_1	0.93
PF01436	NHL	0.93
PF13442	Cytochrome_CBB3	0.93
PF06725	3D	0.93
PF02781	G6PD_C	0.93
PF05016	ParE_toxin	0.93
PF13193	AMP-binding_C	0.93
PF10722	YbjN	0.93
PF02545	Maf	0.93
PF13493	DUF4118	0.93
PF03734	YkuD	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.93
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
All Organisms	root	All Organisms	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
cellular organisms	root	All Organisms → cellular organisms	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.10 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.69 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.15 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.87 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.87 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.93 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	0.93 %
Terrihabitans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Terrihabitans	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
unclassified Caulobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter	0.93 %
Terrihabitans soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Terrihabitans → Terrihabitans soli	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.49 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Caulobacter sp. X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. X	0.93 %
Terrihabitans soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Terrihabitans → Terrihabitans soli	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_102189265	Not Available	636	Open in IMG/M
3300001661\|JGI12053J15887_10447551	Not Available	618	Open in IMG/M
3300002886\|JGI25612J43240_1078422	Not Available	520	Open in IMG/M
3300004081\|Ga0063454_101665817	Not Available	553	Open in IMG/M
3300004633\|Ga0066395_10140393	Not Available	1213	Open in IMG/M
3300005093\|Ga0062594_100897302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	836	Open in IMG/M
3300005332\|Ga0066388_100015624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6302	Open in IMG/M
3300005332\|Ga0066388_103278900	Not Available	827	Open in IMG/M
3300005440\|Ga0070705_100554247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	882	Open in IMG/M
3300005547\|Ga0070693_101244809	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300005713\|Ga0066905_100143040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1710	Open in IMG/M
3300005764\|Ga0066903_101233139	Not Available	1391	Open in IMG/M
3300005983\|Ga0081540_1007466	All Organisms → cellular organisms → Bacteria	7786	Open in IMG/M
3300006797\|Ga0066659_10809385	Not Available	776	Open in IMG/M
3300006806\|Ga0079220_10371102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300006806\|Ga0079220_11675687	Not Available	555	Open in IMG/M
3300006845\|Ga0075421_100176923	All Organisms → cellular organisms → Bacteria	2655	Open in IMG/M
3300006847\|Ga0075431_100822552	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300006852\|Ga0075433_10954548	Not Available	747	Open in IMG/M
3300006954\|Ga0079219_10591781	Not Available	809	Open in IMG/M
3300007788\|Ga0099795_10001732	All Organisms → cellular organisms → Bacteria	4869	Open in IMG/M
3300007788\|Ga0099795_10194804	Not Available	852	Open in IMG/M
3300009012\|Ga0066710_100828098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1420	Open in IMG/M
3300009137\|Ga0066709_103846095	Not Available	545	Open in IMG/M
3300009143\|Ga0099792_10049804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2037	Open in IMG/M
3300009156\|Ga0111538_10021535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8419	Open in IMG/M
3300009176\|Ga0105242_11347709	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
3300010358\|Ga0126370_11324029	Not Available	676	Open in IMG/M
3300010360\|Ga0126372_12345482	Not Available	584	Open in IMG/M
3300010362\|Ga0126377_10232824	Not Available	1784	Open in IMG/M
3300010362\|Ga0126377_10464474	Not Available	1291	Open in IMG/M
3300010362\|Ga0126377_10611441	Not Available	1135	Open in IMG/M
3300010362\|Ga0126377_12842310	Not Available	558	Open in IMG/M
3300012198\|Ga0137364_11345990	Not Available	530	Open in IMG/M
3300012199\|Ga0137383_10414432	Not Available	987	Open in IMG/M
3300012200\|Ga0137382_11322392	Not Available	508	Open in IMG/M
3300012210\|Ga0137378_10491898	Not Available	1133	Open in IMG/M
3300012211\|Ga0137377_10497641	Not Available	1157	Open in IMG/M
3300012349\|Ga0137387_10082604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2212	Open in IMG/M
3300012360\|Ga0137375_10189863	Not Available	1957	Open in IMG/M
3300012360\|Ga0137375_10992670	Not Available	661	Open in IMG/M
3300012361\|Ga0137360_10591217	Not Available	950	Open in IMG/M
3300012469\|Ga0150984_112271871	Not Available	571	Open in IMG/M
3300012683\|Ga0137398_10796010	Not Available	660	Open in IMG/M
3300012685\|Ga0137397_11057752	Not Available	594	Open in IMG/M
3300012923\|Ga0137359_11160653	Not Available	659	Open in IMG/M
3300012924\|Ga0137413_10043595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2556	Open in IMG/M
3300012925\|Ga0137419_11021411	Not Available	686	Open in IMG/M
3300012925\|Ga0137419_11984101	Not Available	500	Open in IMG/M
3300012927\|Ga0137416_11561350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300012929\|Ga0137404_10111518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2222	Open in IMG/M
3300012929\|Ga0137404_10915170	Not Available	800	Open in IMG/M
3300012930\|Ga0137407_10018246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5202	Open in IMG/M
3300012930\|Ga0137407_10105551	Not Available	2423	Open in IMG/M
3300012930\|Ga0137407_10695772	Not Available	957	Open in IMG/M
3300012948\|Ga0126375_10140555	All Organisms → cellular organisms → Bacteria → Proteobacteria	1506	Open in IMG/M
3300014497\|Ga0182008_10422130	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300015052\|Ga0137411_1230577	Not Available	570	Open in IMG/M
3300015241\|Ga0137418_10098399	All Organisms → cellular organisms → Bacteria	2634	Open in IMG/M
3300015242\|Ga0137412_10019308	Not Available	5546	Open in IMG/M
3300015245\|Ga0137409_11100504	Not Available	634	Open in IMG/M
3300015264\|Ga0137403_10059408	Not Available	3911	Open in IMG/M
3300015264\|Ga0137403_11294757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. X	575	Open in IMG/M
3300018027\|Ga0184605_10351767	Not Available	665	Open in IMG/M
3300018028\|Ga0184608_10040255	Not Available	1801	Open in IMG/M
3300018072\|Ga0184635_10126895	Not Available	1015	Open in IMG/M
3300018072\|Ga0184635_10259503	Not Available	687	Open in IMG/M
3300018073\|Ga0184624_10109465	Not Available	1188	Open in IMG/M
3300018081\|Ga0184625_10066158	Not Available	1830	Open in IMG/M
3300019876\|Ga0193703_1023173	Not Available	957	Open in IMG/M
3300019879\|Ga0193723_1091300	Not Available	866	Open in IMG/M
3300020021\|Ga0193726_1266345	All Organisms → cellular organisms → Bacteria → Proteobacteria	685	Open in IMG/M
3300021078\|Ga0210381_10236465	Not Available	646	Open in IMG/M
3300021086\|Ga0179596_10200838	Not Available	971	Open in IMG/M
3300022534\|Ga0224452_1196116	Not Available	621	Open in IMG/M
3300022756\|Ga0222622_11263990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300024330\|Ga0137417_1253488	Not Available	863	Open in IMG/M
3300025918\|Ga0207662_10362785	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300026088\|Ga0207641_10933649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	862	Open in IMG/M
3300026285\|Ga0209438_1069469	Not Available	1151	Open in IMG/M
3300026557\|Ga0179587_10259978	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300027512\|Ga0209179_1049289	Not Available	900	Open in IMG/M
3300027765\|Ga0209073_10467777	Not Available	527	Open in IMG/M
3300027874\|Ga0209465_10483206	Not Available	619	Open in IMG/M
3300027903\|Ga0209488_10002366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15496	Open in IMG/M
3300027903\|Ga0209488_10042377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3337	Open in IMG/M
3300027903\|Ga0209488_10310597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1176	Open in IMG/M
3300027903\|Ga0209488_10431400	Not Available	972	Open in IMG/M
3300027909\|Ga0209382_10434065	Not Available	1457	Open in IMG/M
3300031093\|Ga0308197_10181174	Not Available	702	Open in IMG/M
3300031093\|Ga0308197_10223108	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300031114\|Ga0308187_10010582	Not Available	1881	Open in IMG/M
3300031152\|Ga0307501_10042631	Not Available	984	Open in IMG/M
3300031152\|Ga0307501_10073727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	814	Open in IMG/M
3300031184\|Ga0307499_10031827	Not Available	1203	Open in IMG/M
3300031184\|Ga0307499_10134702	Not Available	711	Open in IMG/M
3300031198\|Ga0307500_10017452	Not Available	1518	Open in IMG/M
3300031198\|Ga0307500_10101786	Not Available	772	Open in IMG/M
3300031421\|Ga0308194_10108074	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300031456\|Ga0307513_10907016	Not Available	589	Open in IMG/M
3300031720\|Ga0307469_10251880	All Organisms → cellular organisms → Bacteria → Proteobacteria	1422	Open in IMG/M
3300031720\|Ga0307469_11551054	Not Available	635	Open in IMG/M
3300031740\|Ga0307468_100039034	All Organisms → cellular organisms → Bacteria → Proteobacteria	2362	Open in IMG/M
3300031740\|Ga0307468_100706461	Not Available	844	Open in IMG/M
3300032174\|Ga0307470_10707561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Terrihabitans → Terrihabitans soli	768	Open in IMG/M
3300032180\|Ga0307471_102718742	Not Available	628	Open in IMG/M
3300032205\|Ga0307472_100873104	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.72%
Host-Associated	Host-Associated	10.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.31%
Plants	Host-Associated → Plants	10.28%
Aquatic	Environmental → Aquatic	8.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.31%
Sediment	Environmental → Aquatic → Sediment	7.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.09%
Loam	Environmental → Terrestrial → Soil → Loam	11.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	35.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1021892651	3300001431	Soil	MTEPIALDHSFSDLDAMWETIDAVCEELGLDAHNSLSREIVAHEVIECARLERDPERICELVVRELKGTMLV*
JGI12053J15887_104475512	3300001661	Forest Soil	MAEPVLLDTSISDFEQSNVMWETIHAVCEELGLDARNSLCREIVAHEVIECAWLERDRERICEMVVAELKGPSRLV*
JGI25612J43240_10784222	3300002886	Grasslands Soil	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNXLCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV*
Ga0063454_1016658171	3300004081	Soil	RAEPVLLDTSTSDFEQSNAMWETIYAVCEELGLDARNSLCRKIVAHEVIECARLERDPERICEMVVADLKGPSRVD*
Ga0066395_101403931	3300004633	Tropical Forest Soil	MTEPVVLDPSISDDEQSNEVWETIDAVCEELGLDARNSLSREIVAHEVIECARRERNPERICEMVIAELKGPSRLA*
Ga0062594_1008973022	3300005093	Soil	MTGTIVLDASISDLEQSNALWDAIDAVCEELGLDPRNSLSREIVALEVIECARLERDPDLICEMVVKELKGPTLAA*
Ga0066388_1000156243	3300005332	Tropical Forest Soil	MTGLIALDASVSDLERSSAIWEAIDAVCEELGLDARNSLAREIVAREVMICARLERDPARICEMVVEELKGPTAAA*
Ga0066388_1032789002	3300005332	Tropical Forest Soil	MTERIVPDTSLSDFEQSNAMWEAIDAVCEELGLDACNSFCREIVAHEVIEYARLECDVDRICEMVVKELK
Ga0070705_1005542472	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTIVLDASISDLEQSNTLWDAIDAVCEELGLDPRNSLSREIVALEVIECARLERDPDLICEMVVKELKGPTLAA*
Ga0070693_1012448092	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTIVLDASISDLEQSNALWDAIDAVCEELGLDPRNSLSREIVALEVIECARLERDPDLICEMV
Ga0066905_1001430402	3300005713	Tropical Forest Soil	MTKSIVLDPFVSDLDAMWETIDAVCEELGLDAHNSLSREIVAHEVLECARLERDPERICEMAVKELKGPMAAA*
Ga0066903_1012331391	3300005764	Tropical Forest Soil	MCTPLRSYVRCTTQPFRSAMNATSEAIDAVCEEFGLDADNILSREMVAFDVIECARLERDLERICEMVVKELKSPTAAA*
Ga0081540_10074668	3300005983	Tabebuia Heterophylla Rhizosphere	MTEPIALETSISDLEHSNSLWEAVDSVCEELGLDARNSLSREIVAREVIEYARLERDPERICQMVVQELKGPTLA*
Ga0066659_108093852	3300006797	Soil	MTEPIVLDTFVSELDQSSAMWDAIDAVCEELGLDARNSLSREIVAHEVIECARLERDLGRICEMVVKELKGPMAAA*
Ga0079220_103711021	3300006806	Agricultural Soil	TGPIALDTSDCDFEQSTAMWEAIDEVCEELGLDARNCLAREIIGREVIECARLVRDPARICEMVVKELKGPTVTV*
Ga0079220_116756872	3300006806	Agricultural Soil	MTQPIVLQTSISDLEHSTALWETIDAVCEELGLDARNSLSREIVTREVIECARLERDPERICEIVVQELKGPALA*
Ga0075421_1001769233	3300006845	Populus Rhizosphere	MTEPIVLETSVSDLEQSNTLWEAIDAVCEELGLDPLNSLSREIVAREVIECARLERDPERICEMVVQELKGPMLT*
Ga0075431_1008225523	3300006847	Populus Rhizosphere	MTEPIVLETSVSDLEQSNTLWEAVDAVCEELGLDPLNSLSREIVAREVIECARLERDPERICEMVVQELKGPMLT*
Ga0075433_109545482	3300006852	Populus Rhizosphere	ISDLEHSTALWETIDAVCEELGLDARNSLSREIVTREVIECARLERDPERICEIVVQELKGPALA*
Ga0079219_105917811	3300006954	Agricultural Soil	MTQPIVLQTSISDLEHSTALWETIDAVCEELGLDARNSLSREIVAREVIECARLERDPERICEIVVQELKGPALA*
Ga0099795_100017328	3300007788	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDTERICEMVVTELKRPSRLV*
Ga0099795_101948042	3300007788	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDAICEELGLDARKFLSREIVAHEVIECARLERDPERVCEMVVKELKGNGQLDH*
Ga0066710_1008280982	3300009012	Grasslands Soil	MAEPIVLDTFVSELDQSSAMWEAIDAVCEELGLDAQNSLSREIVAHEVIECARLERDPQRICEMVVADLKGPSRLD
Ga0066709_1038460952	3300009137	Grasslands Soil	MTEPIVLDTFVSELDQSSAMWDAIDAVCEELGLDARNSLSREIVAHEVIECARLERDLERICEMVVKELKGPMAAA*
Ga0099792_100498043	3300009143	Vadose Zone Soil	MTEPNVLDASVSDLDAMWETIDTVCEELGLDARNSLSREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH*
Ga0111538_100215353	3300009156	Populus Rhizosphere	MTEPIVLETSVSDLEQSNTLWSAVDAVCEELGLDPLNSLSREIVAREVIECARLERDPERICEMVVQELKGPMLT*
Ga0105242_113477092	3300009176	Miscanthus Rhizosphere	MTGTIVLDASISDLEQSNTLWDAIDAVCEELGLDPRNSLSREIVALEVIECARLERDPDLICEMVVKEL
Ga0126370_113240291	3300010358	Tropical Forest Soil	TWRLVVLSVQWELAAMTGPIALGTYVCDLEQSNAMWEAIDEVCEELGLDARNSLTREIVAREVIECARLVRDPARICEIVVKELKGPTAAV*
Ga0126372_123454822	3300010360	Tropical Forest Soil	MREPIVLNAPLCDLEAMNAMSEAIDAVCEELGLDARNSLAREIVAREVMICARLERDPARICEMVVEELKGPRPAA*
Ga0126377_102328243	3300010362	Tropical Forest Soil	MTAPIVPNTSLSDLEQSTGMWEAIDAVCEELGLDAHNPLSREIVAHEVGKYARLERDPDRICEMVVEELKGPSAAA*
Ga0126377_104644743	3300010362	Tropical Forest Soil	MTKPIVLDPFVSDLDAMWETIDAVCEELGLDAHNSLSREIVAHEVIEYARLERDLDRICEMVVEELKGPTAAA*
Ga0126377_106114412	3300010362	Tropical Forest Soil	MAEPIVLDTSGSDLEQSNAMLEAIDAVCEELGLDARNSLSREIVANEVIECARLERDPERICEMVVADLKGSSRLD*
Ga0126377_128423102	3300010362	Tropical Forest Soil	LVVLSILQGVAAMAEPVLLDTSICDFEQSNAMSETIHAVCEELGLDARNFLCREIVACEVIECARLERDPERICEMVVTELKGPSRLV*
Ga0137364_113459902	3300012198	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVADLKGPWRLD*
Ga0137383_104144321	3300012199	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWDAIDAVCRELGLDARNSLCREIVAHEVIECARLERDPELICEMVVADLKGPSRLD*
Ga0137382_113223922	3300012200	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKRPSRLV*
Ga0137378_104918981	3300012210	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWEAIDAVCGELGLDARNSLSREIVAHEMIECARLERDPQRICEMVVADLKGPSRLD*
Ga0137377_104976412	3300012211	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWEAIDVVCGELGLDVRNSLSREIVAHEVIECARLERDPQRICEMVVADLKGPSRLD*
Ga0137387_100826042	3300012349	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWEAIDAVCGELGLDARNSLSREIVAHEVIECARLERDPQRICEMVVADLKGPSRLD*
Ga0137375_101898631	3300012360	Vadose Zone Soil	MAEPVLLDTSTSDFEQSNAMWETIHAVCEELGLDAHNSLCREIVAHEVIECARLERDPERICEIVVADLKGPSRLD*
Ga0137375_109926702	3300012360	Vadose Zone Soil	MTEPVVLDTSVSDFEQSNTMWEAIDAVCEELGFDPRNSLSRDIVAHEVIEWARFERDPQRICEIVVKELKGPSAAA*
Ga0137360_105912172	3300012361	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWDAIDAVCRELGLDARNSLSREIVAHEVIECARLERDPERICEMVVADLKGPSRLD*
Ga0150984_1122718711	3300012469	Avena Fatua Rhizosphere	MTGPIALDTSVCDLEQSNVTWEAIDEVCEELGLDARNSFTREIVAREVTKCARLGRDPARICEMVVKELKGPTLAA*
Ga0137398_107960101	3300012683	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDSICEELGLDARKFLSREIVAHEVIECARLERDPERVCEMVVKELKG
Ga0137397_110577522	3300012685	Vadose Zone Soil	MAEPVLLDTSISDFEQSNTMREAIHVVCEELGLDARNSFCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV*
Ga0137359_111606532	3300012923	Vadose Zone Soil	MAEPVLLDTSISDFEQSNTMWETIHAVCEELGLDARNSLCREIVAHEVIEYARLERDPERICEMVVADLKGPSR
Ga0137413_100435952	3300012924	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDVVCEELGLDARNFLSREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH*
Ga0137419_110214112	3300012925	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDAICEELGLDARKFLSREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH*
Ga0137419_119841012	3300012925	Vadose Zone Soil	MTEPNVLDASVSDLDAMWETIDTVCEELGLDARNSLCREIVAHEVIECAQLERDTERICEMVVTELKRPSRLV*
Ga0137416_115613501	3300012927	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDAICEELGLDARKFLSREIVAHEVIECARLERDPERVCEMVVKELKGNGQLGH*
Ga0137404_101115182	3300012929	Vadose Zone Soil	SVQWEEAAMTGPNALDTSVPDLEQSNAMWEAIDAVCEELGLDARNSLAREIVAREVIICARLERDPARICEMAVKELKGPTVAA*
Ga0137404_109151702	3300012929	Vadose Zone Soil	METGRPLDLQEVAAMAEPVLLDTSISDFEQSSAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKRPSRLV*
Ga0137407_100182464	3300012930	Vadose Zone Soil	MTGPNALDTSVPDLEQSNAMWEAIDAVCEELGLDARNSLAREIVAREVIICARLERDPARICEMAVKELKGPTVAA*
Ga0137407_101055513	3300012930	Vadose Zone Soil	MAEPVLLNTSISDFEQSNAMWETIHAVCEELGLDARDSLCREIVAHEVIECAWLERDPERICEMVIAELKGPSRLV*
Ga0137407_106957721	3300012930	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWEAIDAVCEELGLDARNPLSREIVAHEVNECARLERDPERICEMVVADLKGPSRLD*
Ga0126375_101405553	3300012948	Tropical Forest Soil	MTEPIVLDPSVSDLDAMWETIDAICEELGLDARNSLSREIVAHEVIECARRERDPERICEMVVRELKGNSIVV*
Ga0182008_104221302	3300014497	Rhizosphere	LSEDLETGRSLCTVEEAAMTGPIAPDTFVCDLEQSSASWEAIDEVCEQLGLDARNALTREIVAREVARCARLVRDPARICEMVVKELKGPTLAA*
Ga0137411_12305772	3300015052	Vadose Zone Soil	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECAWLERDPERICEMVVTELKGPSRLV*
Ga0137418_100983991	3300015241	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDVVCEELGLDTRNFLSREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH*
Ga0137412_100193084	3300015242	Vadose Zone Soil	MAEPVLLDTSISDFEQSNVMWETIHAVCEELGLDARNSLCREIVAHEVIECAQLERDTERICEMVVTELKRPSRLV*
Ga0137409_111005041	3300015245	Vadose Zone Soil	MTEPIALDTSVSDLDAMWETIDVICEELGLDNCNSFSREIVAHEVIECARLERNPERICEMVVRELKGSMLV
Ga0137403_100594086	3300015264	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMRETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKRPSRLV*
Ga0137403_112947571	3300015264	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDAICEELGLDARNFLSREIVAHEVIECARLERDPERICEMVVKELKGNG
Ga0184605_103517671	3300018027	Groundwater Sediment	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKVPSRLV
Ga0184608_100402551	3300018028	Groundwater Sediment	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV
Ga0184635_101268952	3300018072	Groundwater Sediment	MRIVLGSSVSDVEQLNATWEEAIDAVCEELGLDARNSLSREIVAHEVIECARLERDPERICEIVVKELKGPSAAA
Ga0184635_102595031	3300018072	Groundwater Sediment	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVTECARLERDPERICEM
Ga0184624_101094653	3300018073	Groundwater Sediment	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMV
Ga0184625_100661583	3300018081	Groundwater Sediment	MRIVLGSSVSDVEQLDATWEEAIDAVCEELGLDARNSLSREIVAHEVIECARLERDPERICEIVVKELKGPSAAA
Ga0193703_10231733	3300019876	Soil	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKGPS
Ga0193723_10913002	3300019879	Soil	MAEPVLLDISTSDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVADLKGPSRLD
Ga0193726_12663452	3300020021	Soil	MTGTIVLDTSISDLEQSNMLWEAIEAVCEELGLDACNSLSREMVAHEVIECARLERDPDRICEMVVKELKGPTLAA
Ga0210381_102364651	3300021078	Groundwater Sediment	MTEPVVLDTSVSDLEQSNTMWEAIDAVCEELGLDARNSLSREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH
Ga0179596_102008381	3300021086	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDTERICEMVVTELKGPSRLV
Ga0224452_11961162	3300022534	Groundwater Sediment	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH
Ga0222622_112639902	3300022756	Groundwater Sediment	MIERILLNASFCELEQTNPMSEAIDAVCEELGLDAHNSLSREIVAHEVIECARLERDPERICEMVVR
Ga0137417_12534882	3300024330	Vadose Zone Soil	MTEPIVLDTSVSDLEQSNAMWEAIDAVCRELGLDARNSLSREIVAHEVIECARLERDPERICEMVVADLKGPSRLD
Ga0207662_103627851	3300025918	Switchgrass Rhizosphere	MTGTIVLDASISDLEQSNALWDAIDAVCEELGLDPRNSLSREIVALEVIECARLERDPDLICEMVVKELKGPTLAA
Ga0207641_109336491	3300026088	Switchgrass Rhizosphere	MTGTIVLDASISDLEQSNTLWDAIDAVCEELGLDPRNSLSREIVALEVIECARLERDPDLICEMVVKELKGPTLAA
Ga0209438_10694691	3300026285	Grasslands Soil	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNPLCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV
Ga0179587_102599782	3300026557	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMWETIHAVCEELGLDALNSLCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV
Ga0209179_10492892	3300027512	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDVVCEELGLDARKFLSREIVAHEVIECAQLARDTERICEMVVTELKRPSRLV
Ga0209073_104677771	3300027765	Agricultural Soil	MTQPIVLQTSISDLEHSTALWETIDAVCEELGLDARNSLSREIVTREVIECARLERDPERICEIVVQELKGPALA
Ga0209465_104832061	3300027874	Tropical Forest Soil	MTEPVVLDPSISDDEQSNEVWETIDAVCEELGLDARNSLSREIVAHEVIECARRERNPERICEMVIAELKGPSRLA
Ga0209488_1000236613	3300027903	Vadose Zone Soil	MAEPVLLVTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDTERICEMVVTELKRPSRLV
Ga0209488_100423771	3300027903	Vadose Zone Soil	MTEPNVLDASVSDLDAMWETIDTVCEELGLDARNSLSREIVAHEVIECARLERDPERICEMVVKELKGHGWQLEH
Ga0209488_103105972	3300027903	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDAVCEELGLDARNFLSREIVAHEVIECARLERDPERICEMVVKELKGNGQLDH
Ga0209488_104314001	3300027903	Vadose Zone Soil	MTELIALDTSVSDLDAMWETIDAICEELGLDARKFLSREIVAHEVIECARLERDPERVCEMVVKELKGNGQLDH
Ga0209382_104340652	3300027909	Populus Rhizosphere	MTEPIVLETSVSDLEQSNTLWEAVDAVCEELGLDPLNSLSREIVAREVIECARLERDPERICEMVVQELKGPMLT
Ga0308197_101811741	3300031093	Soil	MAEPILLDTSTSDFEQSNAMWETIHAVCEELRLDARNSLCREIVAHEVIECARLERDPERICEMVVADLKGPSRLD
Ga0308197_102231081	3300031093	Soil	MAEPVLLDSSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECARLERDPERICEMVVTELKGPSRLV
Ga0308187_100105823	3300031114	Soil	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVTECARLERDPERICEMVVTELKGPSRLV
Ga0307501_100426311	3300031152	Soil	MTEPIVLDASVSDLDAMWETIDAVCEELGLDARNSLSREIVAHEVIECARLERDPERICEMVVAELKGPSRLV
Ga0307501_100737272	3300031152	Soil	MTEPIALDTSVSDLDAMWETIDVICEELGLDNCNSFSREIVAHEVIECARLERNPERICETVVRELKGSMLV
Ga0307499_100318272	3300031184	Soil	MTGTIVLDTSISDLEQSNTLWEAIEAVCEELGLDACNSLSREMVAHEVIECARLERDPDRICEMVVKELKGPTLAA
Ga0307499_101347021	3300031184	Soil	GAAAMAEPVLPDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAYEVIECARLERDPERICEMVVTELKGPSRLV
Ga0307500_100174523	3300031198	Soil	MAEPVLLNTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAYEVIECARLERDPERICEMVVTELKGPSRLV
Ga0307500_101017862	3300031198	Soil	MIERILLNASFCELEQTNAMSEAIDAVCEELGLDAHNSLSREIVAHEVIECARLERDPERICEMVVRELKGSMLV
Ga0308194_101080742	3300031421	Soil	MAEPILLDTSTSDFEQSNAMWETIHAVCEELGLDARNSFCREIVTHEVIERARLERDPERICEMVVTELKGPSRLV
Ga0307513_109070162	3300031456	Ectomycorrhiza	MAEPVLLDTSISDFEQSNAMWETIHAVCEELGLDARNSLCREIVAHEVIECAWLERDPERICEMVVAELKGPSRLV
Ga0307469_102518803	3300031720	Hardwood Forest Soil	MRIVLASSISDVEQLNATWEEAIDAVCEELGLDARNSLSREIVAHEVIECARLERDPERICEMVVNELKGPVLAA
Ga0307469_115510541	3300031720	Hardwood Forest Soil	ERILLNASFCELEQTNAMSEAIDAICDELGLDAHNFLSREIVAHEVIECARLERDPERICEMVVRELKGNSMLV
Ga0307468_1000390342	3300031740	Hardwood Forest Soil	MRIVLASSISDVEQLNATWEEAIDAVCEELGFDARNSLSREMVAHEVIECARLERDPERICEIVVKELKGPPAAA
Ga0307468_1007064611	3300031740	Hardwood Forest Soil	MIERILLNASFCELEQTNAMSEAIDAICDELGLDAHNFLSREIVAHEVIECARLERDPERICEMVVRELKGNSMLV
Ga0307470_107075611	3300032174	Hardwood Forest Soil	MTQPFVLDTSISDLEQSNTLWEAIEAVCEELGLDACNSLSREIVAHEVIECARLERDPERICEMVVNELKGPVLAA
Ga0307471_1027187421	3300032180	Hardwood Forest Soil	MIERILLNASFCELEQTNAMSEAIDAVCEELGLDAHNSLSREIVAHEVIECARLERDPERICEMVVTELKGPSRLV
Ga0307472_1008731041	3300032205	Hardwood Forest Soil	MTQPFVLDTSISDLEQSNTLWEAIEAVCEELGLDACNSLSREIVAHEVIECARLERDPERICEMV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092896

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences