Metagenome Family F093158

Basic Information
Family ID	F093158
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	51 residues
Representative Sequence	RSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Number of Associated Samples	91
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (11.321 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.774 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.54% Coil/Unstructured: 63.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF05567	Neisseria_PilC	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.83%
Host-Associated	Host-Associated	47.17%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	47.17%
Terrestrial	Environmental → Terrestrial	36.79%
Aquatic	Environmental → Aquatic	16.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	32.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.04%
Freshwater	Environmental → Aquatic → Freshwater	11.32%
Floodplain	Environmental → Terrestrial → Floodplain	3.77%
Sediment	Environmental → Aquatic → Sediment	2.83%
Marine	Environmental → Aquatic → Marine	1.89%
Roots	Host-Associated → Plants → Roots	1.89%
Peat	Environmental → Terrestrial → Peat	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.43%
Lake	Environmental → Aquatic → Freshwater → Lake	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	6.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Sediment	Environmental → Aquatic → Marine → Sediment	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.43%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.60%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.77%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.32%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.77%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004048	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015080	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6C, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031654_101781772	3300003861	Freshwater Lake Sediment	RMCANPGPALSSNCNLSSQGLGADAGTQHYEGLVRPGDAFYRVTVRVEGPRNTVAYAQAILK*
Ga0055494_100231002	3300004048	Natural And Restored Wetlands	LGADPGTQHYVGLIRPGDAFYRVTVRVEGPRSTVTYAQAVLK*
Ga0062590_1026643442	3300004157	Soil	NPGAAVAANCNLATGAFGADPGTEHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQATLK*
Ga0070676_101790551	3300005328	Miscanthus Rhizosphere	GNRSCYVIERMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK*
Ga0070670_1003948902	3300005331	Switchgrass Rhizosphere	LSAAALGADAGTQHYEALQRAGDAYYRLTVRVEGPRNTVQYAQAFLK*
Ga0070677_106576601	3300005333	Miscanthus Rhizosphere	AAIRSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAILR*
Ga0068869_1003261102	3300005334	Miscanthus Rhizosphere	AVGSNCNLSSQALGADAGTQHYEGLGRPGDAYYRVTIRVEGPRNTVAYAQAILR*
Ga0070668_1000451002	3300005347	Switchgrass Rhizosphere	LSTQALGADAGTQHYEGLGRPGDAYYRVTIRVEGPRNTVAYAQAILR*
Ga0070668_1009379122	3300005347	Switchgrass Rhizosphere	TGPAIGTNCNLSSSAMGADAGTQHYEGLVRSGEAFYRVTVRVEGPRNTVAYAQAILR*
Ga0070669_1003253232	3300005353	Switchgrass Rhizosphere	LAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK*
Ga0070675_1000974272	3300005354	Miscanthus Rhizosphere	RSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAILK*
Ga0070674_1012729811	3300005356	Miscanthus Rhizosphere	TGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0070688_1005253672	3300005365	Switchgrass Rhizosphere	NLALGAFGADPGTEHYVGLIRPGDSFYRVTVRVEGPRNTVTYAQAVLK*
Ga0070705_1004370031	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GAASSNCNLALGSLGADAGTQHYEGIVRPGGAFYRVTVRVEGPRNTVAYAQTILQ*
Ga0070705_1015279872	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LGAFGADPGTEHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK*
Ga0070662_1001770481	3300005457	Corn Rhizosphere	RSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0068867_1002985152	3300005459	Miscanthus Rhizosphere	LATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0068867_1008278811	3300005459	Miscanthus Rhizosphere	SNCNLALGAFGADPGTEHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK*
Ga0070695_1002103811	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	RSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK*
Ga0070693_1009763121	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	NSGPAVGANCNLSAAALGADAGTQHYEALSRVGDAYYRVTIRVEGPRNTVQYAQAFLK*
Ga0070665_1018171482	3300005548	Switchgrass Rhizosphere	CNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAILK*
Ga0070704_1006239171	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	RMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK*
Ga0068854_1008562031	3300005578	Corn Rhizosphere	GPAIRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0068864_1006660302	3300005618	Switchgrass Rhizosphere	GADAGTQHYEGLVRAGDAYYRVTVRVEGPRNTVAYAQAILR*
Ga0068861_1001446071	3300005719	Switchgrass Rhizosphere	IERMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK*
Ga0068861_1020504581	3300005719	Switchgrass Rhizosphere	GSNCNVSSQAMGADAGTQHYEGLVRAGDAYYRVTVRVEGPRNTVAYAQAILR*
Ga0066903_1062332172	3300005764	Tropical Forest Soil	DAGTQHYDALSRAGDAYYRLTVRVEGPRNTVQYAQAFLK*
Ga0074479_101728262	3300005829	Sediment (Intertidal)	NLSNLALGADAGTQHYEGLVRPGNAYFRVTVRVEGPRNTVAYAQAILR*
Ga0068870_102736941	3300005840	Miscanthus Rhizosphere	GSLGADAGTQHYEGIVRPGGAFYRVTVRVEGPRNTVAYAQTILQ*
Ga0068870_111448792	3300005840	Miscanthus Rhizosphere	GPAIRSNCNLATGSLGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0075026_1002854121	3300006057	Watersheds	NCNLATGAFGADPGTEHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK*
Ga0111539_108009721	3300009094	Populus Rhizosphere	LCGSTGPAIGTNCNLSSSAMGADAGTQHYEGLVRSGEAFYRVTVRVEGPRNTVAYAQAILR*
Ga0105245_126688152	3300009098	Miscanthus Rhizosphere	MCLAPGPAIRSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0075418_102194441	3300009100	Populus Rhizosphere	RSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0105243_118681661	3300009148	Miscanthus Rhizosphere	NLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK*
Ga0111538_119390021	3300009156	Populus Rhizosphere	GTEHYVGLIRPGDSFYRVTVRVEGPRNTVTYAQAVLK*
Ga0126374_110589381	3300009792	Tropical Forest Soil	GAALGSNCNLSAAGLGADAGTQHYEALVRPGDAYYRVTVRVEGPRSTVVYAQAILR*
Ga0126372_126746761	3300010360	Tropical Forest Soil	GAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK*
Ga0134122_116068622	3300010400	Terrestrial Soil	GSNCNLSAAALGADAGTQHYEALSRVGDAYYRVTVRVEGPRNTVQYAQAFLK*
Ga0137463_13437262	3300011444	Soil	TQHYFGLIRPGEAYYRLTVRVEGPRNTVTYAQAILQ*
Ga0157374_113642602	3300013296	Miscanthus Rhizosphere	LATGALGADPGTEHYVGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0163163_117799851	3300014325	Switchgrass Rhizosphere	AGTQHYEGLGRPGDAYYRVTIRVEGPRNTVAYAQAILR*
Ga0163163_121775862	3300014325	Switchgrass Rhizosphere	ALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAILK*
Ga0157380_110646641	3300014326	Switchgrass Rhizosphere	LNPGAAIASNCNLALGAFGADPGTEHYVGLIRPGDSFYRVTVRVEGPRNTVTYAQAVLK*
Ga0157376_101139352	3300014969	Miscanthus Rhizosphere	LATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRNTVTYAQAVLK*
Ga0167639_10409711	3300015080	Glacier Forefield Soil	GNNWNLSSGAFGADPGTQHYVGLVRPGDAYYRVTVRVEGPRNTVSYAQALLK*
Ga0187779_109436121	3300017959	Tropical Peatland	LNAGPAVGNNCNLSSSAFGADPGTQHYVGLVRPGDAYYRVTIRVEGPRNTVGYAQAMLK
Ga0187788_105634281	3300018032	Tropical Peatland	AANCNLATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRSTVTYAQAVLK
Ga0187774_108798562	3300018089	Tropical Peatland	ATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0190274_120990831	3300018476	Soil	ADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAILK
Ga0193733_11265001	3300020022	Soil	RMCLAPGPAIRSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0210384_107925001	3300021432	Soil	AFGNNCNLSSAALGADAGTQHYEALSRVGDAYYRVTVRVEGPRNTVQYAQAFLK
Ga0224510_107141272	3300022309	Sediment	QHYIGLVRPGDAYYRVTVRVEGPRKTVTYAQSMLR
Ga0247800_10222982	3300023263	Soil	CLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0207680_101752841	3300025903	Switchgrass Rhizosphere	EHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0207680_109252802	3300025903	Switchgrass Rhizosphere	AIRSNCNLATGALGADPGTEHYVGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0207645_107361092	3300025907	Miscanthus Rhizosphere	PGAAIASNCNLALGAFGADPGTEHYVGLIRPGDSFYRVTVRVEGPRNTVTYAQAVLK
Ga0207681_108370772	3300025923	Switchgrass Rhizosphere	QHYEGIVRPGGAFYRVTVRVEGPRNTVAYAQTILQ
Ga0207659_101510951	3300025926	Miscanthus Rhizosphere	LAPGAAVRSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAILK
Ga0207659_103084892	3300025926	Miscanthus Rhizosphere	RSCYVIERMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0207709_103783231	3300025935	Miscanthus Rhizosphere	GNRSCYVIERMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0207704_111286282	3300025938	Miscanthus Rhizosphere	AVAANCNLATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQATLK
Ga0207651_110126102	3300025960	Switchgrass Rhizosphere	CLSPGAAIASNCNLALGAFGADPGTEHYVGLIRPGDSFYRVTVRVEGPRNTVTYAQAVLK
Ga0207651_121325701	3300025960	Switchgrass Rhizosphere	YVIERMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0207712_102733362	3300025961	Switchgrass Rhizosphere	GADPGTEHYVGLIRPGDSFYRVTVRVEGPRNTVTYAQAVLK
Ga0207640_108240601	3300025981	Corn Rhizosphere	PGPAIRSNCNLATGALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0207658_113225102	3300025986	Switchgrass Rhizosphere	RSCYVIERMCLAPGPAVRSNCNLATGALGADPGTEHYIGLTRPGDTYYRVTVRVEGPRSTVTYAQAVLK
Ga0207703_115117293	3300026035	Switchgrass Rhizosphere	CLNPGAAVAANCNLATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQATLK
Ga0207678_105645851	3300026067	Corn Rhizosphere	DADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0207648_101377931	3300026089	Miscanthus Rhizosphere	GALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0207648_107238671	3300026089	Miscanthus Rhizosphere	IERMCLAPGPAIRSNFNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0207675_1009021952	3300026118	Switchgrass Rhizosphere	VGPGLAVGSNCNLSAAALGADAGTQHYEALQRAGDAYYRLTVRVEGPRNTVQYAQAFLK
Ga0207683_111750602	3300026121	Miscanthus Rhizosphere	DAGTQHYEGLVRAGDAYYRVTVRVEGPRNTVAYAQAILR
Ga0209254_106294831	3300027897	Freshwater Lake Sediment	CNLATGALGADPGTQHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0209253_104211252	3300027900	Freshwater Lake Sediment	RMCLAPGPAIRSNCNLATGAMGADPGTQHYVGLIRPGDAFYRVTVRVEGPRSTVTYAQAVLK
Ga0268266_116372942	3300028379	Switchgrass Rhizosphere	AIGSNCNVSSQAMGADAGTQHYEGLVRAGDAYYRVTVRVEGPRNTVAYAQAILR
Ga0268265_107876442	3300028380	Switchgrass Rhizosphere	ADAGTQHYEGIVRPGGAFYRVTVRVEGPRNTVAYAQTILQ
Ga0311334_104354582	3300029987	Fen	NPGLPVGSNCNLSSSSFGADPGTQHYQGLIRPGDAYYRVTIRVEGPRKTVTYAQAMLK
Ga0307497_105124022	3300031226	Soil	GALGADPGTEHYIGLTRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0310915_108734511	3300031573	Soil	NPGAAVAANCNLATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLR
Ga0318561_102424752	3300031679	Soil	CNMSATGMGAAAGTQHYQALQIAGGTFFRVTVRVEGPRNTVQYAQAILR
Ga0307468_1023819571	3300031740	Hardwood Forest Soil	NCNLSTAAFGADLGTQHYVGLVRPGDAYYRVTVRVEGPRNTVSYAQAMLR
Ga0307468_1024375142	3300031740	Hardwood Forest Soil	PGAAIASNCNLATGACGADPGTEHYLGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0318523_106711652	3300031798	Soil	LNPGAAIASNCNLATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0315290_103159491	3300031834	Sediment	GPVLRSNCYLATGALGADPGTQHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0306926_115167281	3300031954	Soil	LNPGAAVAANCNLATGAFGADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLR
Ga0318563_100701132	3300032009	Soil	GADPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLR
Ga0318563_107149531	3300032009	Soil	CNMSLAGMGAAAGTQHYQALQIAGSTFYRVTVRVEGPRNTVQYAQAMLK
Ga0318556_107407162	3300032043	Soil	TEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0315292_109372901	3300032143	Sediment	PGTIHYTGLVRPGDAFYRVTVRVEGPRNTVTYAQAMLR
Ga0315283_104166582	3300032164	Sediment	PAVGNNCNLSTGSFGADPGTIHYTGLVRPGDAFYRVTVRVEGPRNTVTYAQAMLR
Ga0307471_1023123201	3300032180	Hardwood Forest Soil	RMCANPGGAFGNNCNLSSAALGADAGTQHYEALSRVGDAYYRVTVRVEGPRNTVQYAQAFLK
Ga0307472_1002637612	3300032205	Hardwood Forest Soil	NPGAAVGSNCNLATGAFGADSGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0315271_115435871	3300032256	Sediment	DPGTQHYVGLIRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0315286_109334871	3300032342	Sediment	NCNLSSLSLGADAGTQHYEGLVRPGDAYYRVTVRVEGPRNTVAYAQAILK
Ga0315287_107556972	3300032397	Sediment	RSNCNLATGALGADPGTQHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0315275_105697561	3300032401	Sediment	LATGALGADPGTQHYVGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLK
Ga0315273_102260371	3300032516	Sediment	SLGADAGTQHYEGLVRPGDAFYRVTVRVEGPRNTVAYAQAILK
Ga0315273_118098721	3300032516	Sediment	AVGSNCNLSSLSLGADAGTQHYEGLVRPGDAYYRVTVRVEGPRNTVAYAQAILK
Ga0335080_109592752	3300032828	Soil	DPGTEHYIGLIRPGDAFYRVTVRVEGPRNTVTYAQAVLR
Ga0316630_118506491	3300033487	Soil	GADPGTEHYVGLIRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0314864_0067418_2_130	3300033805	Peatland	LGADPGTEHYFGLIRPGEAFYRLTARVEGPRNTVTYAQAILQ
Ga0364929_0090861_2_163	3300034149	Sediment	IRSNCNLATGALGADPGTEHYVGLIRPGDAYYRVTVRVEGPRNTVTYAQAVLK
Ga0364929_0262905_3_161	3300034149	Sediment	RSNCNLATGALGADPGTEHYIGLIRPGDAYYRVTVRVEGPRSTVTYAQAVLK
Ga0364935_0147454_1_186	3300034151	Sediment	MCLATGPAVGTNCNLSAASFGADPGTIHYTGLVRAGDAFYRVTVRVEGPRNTVTYAQAML
Ga0364935_0298449_370_531	3300034151	Sediment	IRSNCNLATGALGADPGTEHYVGLIRPGDAYYRVTVRVEGPRSTVTYAQAVLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093158

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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