Metagenome Family F093164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093164
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	38 residues
Representative Sequence	MGTLQLEKRKGHNDNWGREKGPNAVVVRRAKGQDD
Number of Associated Samples	21
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bangiales
% of genes with valid RBS motifs	75.47 %
% of genes near scaffold ends (potentially truncated)	23.58 %
% of genes from short scaffolds (< 2000 bps)	43.40 %
Associated GOLD sequencing projects	12
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bangiales (77.358 % of family members)
NCBI Taxonomy ID	29216
Taxonomy	Rhodophyta → Bangiophyceae → Bangiales

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine (85.849 % of family members)
Environment Ontology (ENVO)	Unclassified (90.566 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13359	DDE_Tnp_4	5.66
PF13374	TPR_10	1.89
PF01602	Adaptin_N	1.89
PF13384	HTH_23	1.89
PF03184	DDE_1	1.89
PF02992	Transposase_21	1.89
PF14214	Helitron_like_N	0.94
PF14223	Retrotran_gag_2	0.94
PF03221	HTH_Tnp_Tc5	0.94
PF01849	NAC	0.94
PF13976	gag_pre-integrs	0.94
PF07727	RVT_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1308	Transcription factor homologous to NACalpha-BTF3	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Rhodophyta	phylum	Rhodophyta	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis	genus	Gracilariopsis	5.66 %
All Organisms	root	All Organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Bangiophyceae	class	Rhodophyta → Bangiophyceae	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
cellular organisms	root	All Organisms → cellular organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Bangiales	order	Rhodophyta → Bangiophyceae → Bangiales	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.89 %

Name	Rank	Taxonomy	Distribution
Bangiaceae	family	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.94 %

Name	Rank	Taxonomy	Distribution
Porphyra	genus	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	0.94 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Oomycota	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota	0.94 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Saprolegniales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales	0.94 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Saprolegniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Aphanomyces	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Aphanomyces	0.94 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	77.36 %
Unclassified	root	N/A	15.09 %
Gracilariopsis chorda	species	Gracilariopsis → Gracilariopsis chorda	5.66 %
Aphanomyces euteiches	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Aphanomyces → Aphanomyces euteiches	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004791\|Ga0068459_105173	Gracilariopsis → Gracilariopsis chorda	4505	Open in IMG/M
3300005647\|Ga0079203_1026794	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2633	Open in IMG/M
3300005647\|Ga0079203_1036710	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2090	Open in IMG/M
3300005647\|Ga0079203_1038789	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2005	Open in IMG/M
3300005647\|Ga0079203_1054708	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1532	Open in IMG/M
3300005647\|Ga0079203_1101045	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	935	Open in IMG/M
3300005647\|Ga0079203_1171453	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	611	Open in IMG/M
3300005651\|Ga0079202_10004233	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5963	Open in IMG/M
3300005651\|Ga0079202_10023463	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2518	Open in IMG/M
3300005651\|Ga0079202_10056518	Gracilariopsis → Gracilariopsis chorda	1489	Open in IMG/M
3300005651\|Ga0079202_10128794	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	850	Open in IMG/M
3300005654\|Ga0079204_10034506	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2787	Open in IMG/M
3300005654\|Ga0079204_10059901	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1989	Open in IMG/M
3300005654\|Ga0079204_10277474	Not Available	687	Open in IMG/M
3300005654\|Ga0079204_10284795	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	675	Open in IMG/M
3300009072\|Ga0115030_1000586	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	15270	Open in IMG/M
3300009072\|Ga0115030_1000594	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	15202	Open in IMG/M
3300009072\|Ga0115030_1000835	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	13413	Open in IMG/M
3300009072\|Ga0115030_1001379	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	10953	Open in IMG/M
3300009072\|Ga0115030_1013261	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2704	Open in IMG/M
3300009072\|Ga0115030_1024712	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1617	Open in IMG/M
3300009072\|Ga0115030_1073971	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	681	Open in IMG/M
3300009073\|Ga0114957_1002555	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	17281	Open in IMG/M
3300009073\|Ga0114957_1012142	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5920	Open in IMG/M
3300009073\|Ga0114957_1012455	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5810	Open in IMG/M
3300009073\|Ga0114957_1019336	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4087	Open in IMG/M
3300009073\|Ga0114957_1020490	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3892	Open in IMG/M
3300009073\|Ga0114957_1025532	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3248	Open in IMG/M
3300009073\|Ga0114957_1179376	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	662	Open in IMG/M
3300009073\|Ga0114957_1214095	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	579	Open in IMG/M
3300009073\|Ga0114957_1230777	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	549	Open in IMG/M
3300009192\|Ga0114954_1024975	Not Available	913	Open in IMG/M
3300009192\|Ga0114954_1035744	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	731	Open in IMG/M
3300009410\|Ga0114955_1003478	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	7030	Open in IMG/M
3300009410\|Ga0114955_1004678	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5933	Open in IMG/M
3300009410\|Ga0114955_1004864	Not Available	5805	Open in IMG/M
3300009410\|Ga0114955_1012100	Not Available	3143	Open in IMG/M
3300009410\|Ga0114955_1012672	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3032	Open in IMG/M
3300009410\|Ga0114955_1075158	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	700	Open in IMG/M
3300009410\|Ga0114955_1106925	Not Available	535	Open in IMG/M
3300009415\|Ga0115029_1005913	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6033	Open in IMG/M
3300009415\|Ga0115029_1006761	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5578	Open in IMG/M
3300009415\|Ga0115029_1008515	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Aphanomyces → Aphanomyces euteiches	4823	Open in IMG/M
3300009415\|Ga0115029_1013791	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3495	Open in IMG/M
3300009415\|Ga0115029_1029356	Gracilariopsis → Gracilariopsis chorda	2010	Open in IMG/M
3300009415\|Ga0115029_1067917	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1074	Open in IMG/M
3300009415\|Ga0115029_1084400	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	922	Open in IMG/M
3300009415\|Ga0115029_1108593	Not Available	777	Open in IMG/M
3300009415\|Ga0115029_1125335	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	706	Open in IMG/M
3300009415\|Ga0115029_1146550	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	637	Open in IMG/M
3300009417\|Ga0114953_1001407	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	17109	Open in IMG/M
3300009417\|Ga0114953_1025691	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2814	Open in IMG/M
3300009417\|Ga0114953_1039325	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1928	Open in IMG/M
3300009417\|Ga0114953_1040877	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1864	Open in IMG/M
3300009417\|Ga0114953_1088981	Not Available	914	Open in IMG/M
3300009417\|Ga0114953_1105160	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	789	Open in IMG/M
3300009439\|Ga0115031_1001686	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	16350	Open in IMG/M
3300009439\|Ga0115031_1043212	Not Available	2310	Open in IMG/M
3300009439\|Ga0115031_1236927	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	610	Open in IMG/M
3300009446\|Ga0114956_1073919	Gracilariopsis → Gracilariopsis chorda	1705	Open in IMG/M
3300009446\|Ga0114956_1135222	Not Available	1127	Open in IMG/M
3300009446\|Ga0114956_1296659	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	660	Open in IMG/M
3300026840\|Ga0209595_111161	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1056	Open in IMG/M
3300026840\|Ga0209595_117381	Not Available	742	Open in IMG/M
3300026840\|Ga0209595_128164	Not Available	529	Open in IMG/M
3300027009\|Ga0209093_1000955	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	16211	Open in IMG/M
3300027009\|Ga0209093_1001444	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	13488	Open in IMG/M
3300027009\|Ga0209093_1001478	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	13320	Open in IMG/M
3300027009\|Ga0209093_1002613	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	9907	Open in IMG/M
3300027009\|Ga0209093_1003568	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	8064	Open in IMG/M
3300027009\|Ga0209093_1017618	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1940	Open in IMG/M
3300027028\|Ga0209295_1002760	Not Available	6136	Open in IMG/M
3300027028\|Ga0209295_1008686	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3302	Open in IMG/M
3300027028\|Ga0209295_1075516	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	546	Open in IMG/M
3300027262\|Ga0209303_1004447	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6090	Open in IMG/M
3300027262\|Ga0209303_1005197	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5449	Open in IMG/M
3300027262\|Ga0209303_1005806	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5013	Open in IMG/M
3300027262\|Ga0209303_1014640	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2541	Open in IMG/M
3300027262\|Ga0209303_1016121	Not Available	2367	Open in IMG/M
3300027262\|Ga0209303_1025424	Gracilariopsis → Gracilariopsis chorda	1694	Open in IMG/M
3300027262\|Ga0209303_1027504	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1596	Open in IMG/M
3300027262\|Ga0209303_1050592	Not Available	990	Open in IMG/M
3300027262\|Ga0209303_1054109	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	937	Open in IMG/M
3300027262\|Ga0209303_1062364	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	832	Open in IMG/M
3300027325\|Ga0209186_1026389	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2444	Open in IMG/M
3300027325\|Ga0209186_1032391	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2007	Open in IMG/M
3300027325\|Ga0209186_1061652	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1049	Open in IMG/M
3300027498\|Ga0209185_1029308	Gracilariopsis → Gracilariopsis chorda	1799	Open in IMG/M
3300027498\|Ga0209185_1084848	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	804	Open in IMG/M
3300027509\|Ga0209187_1012334	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4611	Open in IMG/M
3300027509\|Ga0209187_1013103	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4398	Open in IMG/M
3300027509\|Ga0209187_1013438	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4304	Open in IMG/M
3300027509\|Ga0209187_1014594	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4014	Open in IMG/M
3300027509\|Ga0209187_1015850	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3752	Open in IMG/M
3300027509\|Ga0209187_1017318	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3468	Open in IMG/M
3300027509\|Ga0209187_1019440	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3151	Open in IMG/M
3300027509\|Ga0209187_1019941	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3088	Open in IMG/M
3300027509\|Ga0209187_1023568	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2662	Open in IMG/M
3300027554\|Ga0209831_1001242	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	23937	Open in IMG/M
3300027554\|Ga0209831_1002479	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	16025	Open in IMG/M
3300027554\|Ga0209831_1026375	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2859	Open in IMG/M
3300027554\|Ga0209831_1035081	Not Available	2243	Open in IMG/M
3300027623\|Ga0209828_1031552	All Organisms → cellular organisms → Eukaryota	2197	Open in IMG/M
3300027623\|Ga0209828_1126383	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	801	Open in IMG/M
3300027623\|Ga0209828_1159424	Not Available	677	Open in IMG/M
3300027623\|Ga0209828_1174012	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	635	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	86.79%
Environmental	Environmental	13.21%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	86.79%
Aquatic	Environmental → Aquatic	13.21%

Habitat	Taxonomy	Distribution
Red Algae	Host-Associated → Algae → Red Algae	86.79%
Marine	Environmental → Aquatic → Marine	13.21%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified	86.79%
Unclassified	Environmental → Aquatic → Marine → Unclassified	13.21%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified → Unclassified	86.79%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	13.21%

Habitat	Taxonomy	Distribution
Marine	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine	85.85%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	13.21%
Porphyra Umbilicalis	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004791	Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean	Host-Associated	Open in IMG/M
3300005647	Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland	Environmental	Open in IMG/M
3300005651	Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine	Environmental	Open in IMG/M
3300005654	Porphyra Blade Metagenome Co-Assembly	Environmental	Open in IMG/M
3300009072	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG	Host-Associated	Open in IMG/M
3300009073	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG	Host-Associated	Open in IMG/M
3300009192	Marine algal microbial communities from Porto, Portugal - Porto_4 metaG	Host-Associated	Open in IMG/M
3300009410	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG	Host-Associated	Open in IMG/M
3300009415	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG	Host-Associated	Open in IMG/M
3300009417	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG	Host-Associated	Open in IMG/M
3300009439	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG	Host-Associated	Open in IMG/M
3300009446	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG	Host-Associated	Open in IMG/M
3300026840	Marine algal microbial communities from Porto, Portugal - Porto_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027009	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027028	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027262	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027325	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027498	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027509	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027554	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027623	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068459_1051734	3300004791	Porphyra Umbilicalis	MGTDNGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD*
Ga0079203_10267942	3300005647	Marine	MGTLQLEKREGHNDNLGSEKGPNAVVDIRAKGQDD*
Ga0079203_10367102	3300005647	Marine	MGTLQLEKIKGHNDNWGRKEGPNTVVVRRAKGQDH*
Ga0079203_10387892	3300005647	Marine	MGTLQLEKKKGHKVNWERKKGTNAVVVRRAKGQDD*
Ga0079203_10547082	3300005647	Marine	MGTLQLEKRKGHNDNWGREKGPNAVVVRRAKGQDD*
Ga0079203_11010452	3300005647	Marine	MGTLQLEKRKGHNDNWGREKGPNAVGARRAKGQDD*
Ga0079203_11714532	3300005647	Marine	MGTLQLKKRKGHIDNWGIEKGPNAVVVRRAKGQDD*
Ga0079202_100042331	3300005651	Marine	MGTLQLLKRKGHNDNWERKKGPIAVVVRRAKAQDDWGTLQ*
Ga0079202_100234632	3300005651	Marine	MGTLELEKRNGHNINWGREKGPNSVVVRKAKGKDD*
Ga0079202_100565183	3300005651	Marine	GTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD*
Ga0079202_101287941	3300005651	Marine	EPYDKDEAIKWGPPMGTLRLEKKKGHKFNWERKEGRNAVVVRRAKGQED*
Ga0079204_100345061	3300005654	Marine	IYQMGTDNGDATVQLEKRKGHNDKWVRKMRPNSVVVKRAKGQDD*
Ga0079204_100599012	3300005654	Marine	IKWGPRMGTLQLEKIKGHNDNWGRKEGPNTVVVRRAKGQDH*
Ga0079204_102774742	3300005654	Marine	METLQVEKRKGHNDNWGREKGPNAVVIRRAKGQDD*
Ga0079204_102847951	3300005654	Marine	EDIKWGPTIGTLQLEKRKGHNENWGRKKGPNAVVVRRAKGQDD*
Ga0115030_100058627	3300009072	Marine	MGTLQLEKRKGHNDNWRTGKGQNAVVVRRAKGQDDWPSLQR*
Ga0115030_100059411	3300009072	Marine	MGKLQLEKRNGHNDIWRREKGQNAAVVRRAKEQDDWPPLQ*
Ga0115030_100083515	3300009072	Marine	MGTLQLEKRKGHNDNWRREKGQNAEVVRRAKGQDDWPPLR*
Ga0115030_100137915	3300009072	Marine	MGTLQLEKRKGHNDNWRREKGQNVVVVRRAKGQDDWPPLQ*
Ga0115030_10132612	3300009072	Marine	MGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD*
Ga0115030_10247121	3300009072	Marine	TLQLEKRKGHNDNWRREKGQNAVVVRRAKGQDDWPPLQ*
Ga0115030_10739711	3300009072	Marine	MRTLQLEKRKGHSDNWRREKGQNAVVVRRAKGQDD*
Ga0114957_100255527	3300009073	Marine	MGTLQLEKRKGRNDNWVRKKEPNAVVVRRAKGMDD*
Ga0114957_10121425	3300009073	Marine	MGTLQLEKRKGHNDNWGSKKGPNALVVRRAKGEDD*
Ga0114957_101245510	3300009073	Marine	MGTLQLEKRRGHNDNWGRKKGPNALVVRRAKGQDD*
Ga0114957_10193363	3300009073	Marine	MGTLQLEKRKGHNDNWGRRKGPNAVVVRRAKGQND*
Ga0114957_10204901	3300009073	Marine	MGTRQLEKRKRHSDNWVRKKGPNAMVVTRAQGQDD*
Ga0114957_10255325	3300009073	Marine	MGTLQLEKRKGHNDNGGIKRGPDAVVVRRAKGQDDYPPLQ*
Ga0114957_11793761	3300009073	Marine	MGMLQLEKRKGHNDNWRREKGPNAVVVRRARGQDD*
Ga0114957_12140951	3300009073	Marine	EDIKWGPTMGTRQLEKRKRHSDNWVRKKGPNAMVVTRAKGRDD*
Ga0114957_12307771	3300009073	Marine	YDKDEDIKWGPTMGTRQLEKRKRHSDNWVRKKGPNAMVVTTAKGQDD*
Ga0114954_10249751	3300009192	Marine	MGTLQLEKRKGHNDNWRREKGKNAVVVRRAKGQDDWPSLQ*
Ga0114954_10357441	3300009192	Marine	TLQLEKRKGHNDNWRREKGQNVVVIRRAKGQDDWPPLQ*
Ga0114955_100347811	3300009410	Marine	MGTLQLEKRKGHNDNWRREKGENAVKVRRAKGQDDWPQLQ*
Ga0114955_10046789	3300009410	Marine	MGTLQLEKRKGHNDNWRTGEGQNAVVVRRAKGQDDWPSLQR*
Ga0114955_10048642	3300009410	Marine	MGTLQLEKRNGHNDIRRRDKGQNAVVVRRAKEQDDWPPLQ*
Ga0114955_10121003	3300009410	Marine	MGTLQLEKRKGHSDNWRREKGQNAVVVRIAKGQDEWPPLQ*
Ga0114955_10126724	3300009410	Marine	MGTLQLEKRNGHKDNWGRKRGPNAVVVRRAKGQDD*
Ga0114955_10751581	3300009410	Marine	LQLEKRKGHSDNWRREKGQNAVVVRRAKGQDDWLPLQ*
Ga0114955_11069251	3300009410	Marine	MGTLQLEKRKGHNDNWRREKGQNAVVVRRAKGQDDWPPIQ*
Ga0115029_10059131	3300009415	Marine	MGTLQLLKRKGHNDNWERKKGPIAVEVRRAKAQDDWGTLQ*
Ga0115029_10067615	3300009415	Marine	MGTLQLEKRRGHNDNWGRKKGPNALVVKRGKGQDD*
Ga0115029_10085155	3300009415	Marine	GTRQLEKRKRHSDNWVRKKGPNAMVVTRAKGQDD*
Ga0115029_10137911	3300009415	Marine	MGTLRLEKKKGHKFNWERKEGRNAVVVRRAKGQED*
Ga0115029_10293563	3300009415	Marine	IKWGPTMGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDE*
Ga0115029_10679172	3300009415	Marine	MGTLQLEKRKGHNDNWGRERGPNAVVVRIAKGQDD*
Ga0115029_10844002	3300009415	Marine	MGTLQPEKRKGRNDNWVRKKGLNAVVVRRAKGKDD*
Ga0115029_11085931	3300009415	Marine	KWGPTMGTLQLEKRKGHNDNWGREKGPNAVVVRRAKGQDD*
Ga0115029_11253351	3300009415	Marine	IKWGPTMGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD*
Ga0115029_11465501	3300009415	Marine	DKDEDIKWGPTMGTRQLEKRKRHSDNWVRKKGPNAMVVTRAKGQDD*
Ga0114953_100140721	3300009417	Marine	MGTLQLEKRKGHNDNWRREKGENAVKVRRAKGQDDWPQL*
Ga0114953_10256913	3300009417	Marine	MGTLQLEKRKGHNDNWRREEGQNAVVVRRAKGQDDWPPLQ*
Ga0114953_10393252	3300009417	Marine	MGMLQLEKRKGHNDNWRREKGQNAVVVRRAKGQDDWPPLQ*
Ga0114953_10408774	3300009417	Marine	GPTMGTLQLEKRKGHSDNWRREKGQNAVVVRRAKGQDDWPPLQ*
Ga0114953_10889812	3300009417	Marine	MGTLKLEKRKRHNDNWRREKGQNAVVVRRAKGQDNWPPL*
Ga0114953_11051603	3300009417	Marine	MEKKGHNDNWRMEKGQNAVVVKRAKGQDDWPPLQ*
Ga0115031_100168618	3300009439	Marine	MGMLQLEKRKGHNDNWGREKGPNAVVVRRARGQDD*
Ga0115031_10432123	3300009439	Marine	MGTLQLEKRKGRNDNWVRKKEPNAVVVRRAKGMDE*
Ga0115031_12369271	3300009439	Marine	DIKWGPTMGTRQLEKRKRHSDNWVRKKGPNAMVVTRAKRQDD*
Ga0114956_10739192	3300009446	Marine	TMGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD*
Ga0114956_11352221	3300009446	Marine	MGTLQLEKRKGHNDNWGRKQGPNAVVVRRAKGQDD*
Ga0114956_12966591	3300009446	Marine	MGMLQLEKRKGHNDNWGREMGPNAVVVRRARGQDD*
Ga0209595_1111611	3300026840	Marine	MGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD
Ga0209595_1173811	3300026840	Marine	MGTLQLEKRKGHNDNWRREKGKNAVVVRRAKGQDDWPSLQ
Ga0209595_1281642	3300026840	Marine	MGTLQLDKRKEHNDNWRREKGENAVAVRRAQGQDDWPLLQ
Ga0209093_10009552	3300027009	Marine	MGTLQLEKRKGHNDNWRREKGQNVVVVRRAKGQDDWPPLQ
Ga0209093_100144425	3300027009	Marine	MGTLQLEKRKGHNDNWRTGKGQNAVVVRRAKGQDDWPSLQR
Ga0209093_100147815	3300027009	Marine	MGTLQLEKRKGHNDNWRREKGQNAEVVRRAKGQDDWPPLR
Ga0209093_10026134	3300027009	Marine	MRTLQLEKRKGHNDNWRREKNQNAVVVRRAKGQDY
Ga0209093_10035682	3300027009	Marine	MGKLQLEKRNGHNDIWRREKGQNAAVVRRAKEQDDWPPLQ
Ga0209093_10176181	3300027009	Marine	MGTLQLEKRKGHNDNWRREKGQNAVVVRRAKGQDDWPPLQ
Ga0209295_100276013	3300027028	Marine	MGTLQLEKRNGHNDIRRRDKGQNAVVVRRAKEQDDWPPLQ
Ga0209295_10086863	3300027028	Marine	MGTLQLEKRNGHKDNWGRKRGPNAVVVRRAKGQDD
Ga0209295_10755162	3300027028	Marine	LQLEKRKGHSDNWRREKGQNAVVVRRAKGQDDWLPLQ
Ga0209303_100444711	3300027262	Marine	MGTLQLLKRKGHNDNWERKKGPIAVEVRRAKAQDDWGTLQ
Ga0209303_10051974	3300027262	Marine	MGTLQLEKRRGHNDNWGRKKGPNALVVKRGKGQDD
Ga0209303_10058062	3300027262	Marine	MGTLQLEKIKGHNDNWGRKEGPNTVVVRRAKGQDH
Ga0209303_10146401	3300027262	Marine	MGTLRLEKKKGHKFNWERKEGRNAVVVRRAKGQED
Ga0209303_10161213	3300027262	Marine	MGTLQLEKRKGRNDNWVRKKEPNAVVVRRAKGMDD
Ga0209303_10254243	3300027262	Marine	DIKWGPTMGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDE
Ga0209303_10275041	3300027262	Marine	DIKWGPTMGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD
Ga0209303_10505922	3300027262	Marine	MGTLQLEKRKGHNDNWGREKGPNAVVVRRAKGQDD
Ga0209303_10541091	3300027262	Marine	MGTLQLEKRKGHNDNWGRERGPNAVVVRIAKGQDD
Ga0209303_10623642	3300027262	Marine	MGTLQPEKRKGRNDNWVRKKGLNAVVVRRAKGKDD
Ga0209186_10263894	3300027325	Marine	MGTLKLEKRKGNNGNWRREDGQNAVVVRRAKRQDDWPPLQ
Ga0209186_10323911	3300027325	Marine	PTMGTLQLEKRKGHSDNWRREKGQNAVVVRRAKGQDDWPPLQ
Ga0209186_10616522	3300027325	Marine	MGTLKLEKRKRHNDNWRREKGQNAVVVRRAKGQDNWPPL
Ga0209185_10293083	3300027498	Marine	MGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDE
Ga0209185_10848481	3300027498	Marine	GPTMGTLQLEKRKGHNDNWGRKKGPNAVVVRRAKGQDD
Ga0209187_10123344	3300027509	Marine	MGTLQLEKRKGHNDNWGRRKGPNAVVVRRAKGQND
Ga0209187_10131035	3300027509	Marine	MGTLQLEKRKGHNDNWGREKGPNAVGARRAKGQDD
Ga0209187_10134384	3300027509	Marine	MGTLQLEKREGHNDNLGSEKGPNAVVDIRAKGQDD
Ga0209187_10145945	3300027509	Marine	MGMLQLEKRKGHNDNWRREKGPNAVVVRRARGQDD
Ga0209187_10158502	3300027509	Marine	MGTLQLEKKKGHKVNWERKKGTNAVVVRRAKGQDD
Ga0209187_10173183	3300027509	Marine	MGTLQLEKRKGRNDNWVRKKGPNAVVVRRAKGKDD
Ga0209187_10194404	3300027509	Marine	MGTLQLEKRRGHNDNWGRKKGPNALVVRRAKGQDD
Ga0209187_10199415	3300027509	Marine	MGTLQLEKRKGHNDNWGIKRGPDAVVVRRAKGQDDYPPLQ
Ga0209187_10235684	3300027509	Marine	MGTLQLKKRKGHIDNWGIEKGPNAVVVRRAKGQDD
Ga0209831_100124216	3300027554	Marine	MGTLQLLKRKGHNDNWERKKGPIAVVVRRAKAQDDWGTLQ
Ga0209831_100247919	3300027554	Marine	MGMLQLEKRKGHNDNWGREKGPNAVVVRRARGQDD
Ga0209831_10263752	3300027554	Marine	METLQVEKRKGHNDNWGREKGPNAVVIRRAKGQDD
Ga0209831_10350812	3300027554	Marine	MGTLQLEKRKGRNDNWVRKKEPNAVVVRRAKGMDE
Ga0209828_10315523	3300027623	Marine	MGTRQLEKRKRHSDNWVRKKGPNAMVVTRAKGQDD
Ga0209828_11263832	3300027623	Marine	METLQVEKRKGHNDNWGREKGPNAVVIRRAKEQDD
Ga0209828_11594241	3300027623	Marine	DKDEDIKWGPTMGTLQLEKRKGHNDNWGREKGPNAVVVRRAKGQDD
Ga0209828_11740121	3300027623	Marine	MGMLQLEKRKGHNDNWGREMGPNAVVVRRARGQDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences