Metagenome Family F093336

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093336
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	97 residues
Representative Sequence	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRGLEDAAKSELRGPNRFKDFWR
Number of Associated Samples	62
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.58 %
% of genes near scaffold ends (potentially truncated)	41.51 %
% of genes from short scaffolds (< 2000 bps)	81.13 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.415 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (63.208 % of family members)
Environment Ontology (ENVO)	Unclassified (54.717 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.208 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.59% β-sheet: 7.81% Coil/Unstructured: 58.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02397	Bac_transf	3.77
PF00293	NUDIX	1.89
PF00989	PAS	0.94
PF05231	MASE1	0.94
PF00239	Resolvase	0.94
PF13701	DDE_Tnp_1_4	0.94
PF01361	Tautomerase	0.94
PF13581	HATPase_c_2	0.94
PF00656	Peptidase_C14	0.94
PF11160	Hva1_TUDOR	0.94
PF03447	NAD_binding_3	0.94
PF07681	DoxX	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	3.77
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.94
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.94
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.94
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.94
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.94
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.94
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
All Organisms	root	All Organisms	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
cellular organisms	root	All Organisms → cellular organisms	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.04 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.66 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.94 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.94 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.94 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.94 %
unclassified Microvirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Microvirga sp. KLBC 81	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. KLBC 81	0.94 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002907\|JGI25613J43889_10015975	All Organisms → cellular organisms → Bacteria → Proteobacteria	2097	Open in IMG/M
3300002907\|JGI25613J43889_10189008	Not Available	549	Open in IMG/M
3300002914\|JGI25617J43924_10365014	Not Available	501	Open in IMG/M
3300007255\|Ga0099791_10038278	Not Available	2123	Open in IMG/M
3300007258\|Ga0099793_10104401	Not Available	1314	Open in IMG/M
3300007788\|Ga0099795_10472919	Not Available	580	Open in IMG/M
3300007788\|Ga0099795_10557683	Not Available	541	Open in IMG/M
3300007788\|Ga0099795_10619413	Not Available	516	Open in IMG/M
3300009038\|Ga0099829_10769543	Not Available	800	Open in IMG/M
3300009038\|Ga0099829_10959143	Not Available	709	Open in IMG/M
3300009088\|Ga0099830_11143248	Not Available	646	Open in IMG/M
3300009088\|Ga0099830_11438636	Not Available	574	Open in IMG/M
3300009089\|Ga0099828_10746851	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300009143\|Ga0099792_10030982	Not Available	2476	Open in IMG/M
3300009143\|Ga0099792_10142962	Not Available	1310	Open in IMG/M
3300011269\|Ga0137392_10788348	Not Available	785	Open in IMG/M
3300011269\|Ga0137392_11184901	Not Available	622	Open in IMG/M
3300011270\|Ga0137391_10045757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3720	Open in IMG/M
3300011271\|Ga0137393_10004221	Not Available	9393	Open in IMG/M
3300011271\|Ga0137393_10524198	Not Available	1016	Open in IMG/M
3300011271\|Ga0137393_10843325	Not Available	783	Open in IMG/M
3300012096\|Ga0137389_10462253	Not Available	1087	Open in IMG/M
3300012189\|Ga0137388_10089945	Not Available	2611	Open in IMG/M
3300012189\|Ga0137388_10308822	Not Available	1451	Open in IMG/M
3300012202\|Ga0137363_10063485	Not Available	2694	Open in IMG/M
3300012202\|Ga0137363_10294715	Not Available	1330	Open in IMG/M
3300012202\|Ga0137363_10310245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1297	Open in IMG/M
3300012205\|Ga0137362_10897200	Not Available	757	Open in IMG/M
3300012361\|Ga0137360_10093058	Not Available	2288	Open in IMG/M
3300012361\|Ga0137360_10218030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1553	Open in IMG/M
3300012361\|Ga0137360_10764062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	831	Open in IMG/M
3300012683\|Ga0137398_10167213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436	Open in IMG/M
3300012683\|Ga0137398_10877637	Not Available	626	Open in IMG/M
3300012685\|Ga0137397_10712646	Not Available	745	Open in IMG/M
3300012917\|Ga0137395_10036197	Not Available	3018	Open in IMG/M
3300012917\|Ga0137395_10114504	Not Available	1808	Open in IMG/M
3300012917\|Ga0137395_10880907	Not Available	648	Open in IMG/M
3300012923\|Ga0137359_10251353	Not Available	1577	Open in IMG/M
3300012923\|Ga0137359_10347843	Not Available	1318	Open in IMG/M
3300012923\|Ga0137359_10681262	Not Available	897	Open in IMG/M
3300012924\|Ga0137413_10524944	Not Available	875	Open in IMG/M
3300012924\|Ga0137413_10757455	Not Available	742	Open in IMG/M
3300012924\|Ga0137413_11458152	Not Available	555	Open in IMG/M
3300012925\|Ga0137419_10280638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1266	Open in IMG/M
3300012925\|Ga0137419_10669546	Not Available	839	Open in IMG/M
3300012927\|Ga0137416_10187594	Not Available	1650	Open in IMG/M
3300012944\|Ga0137410_10143554	Not Available	1812	Open in IMG/M
3300012944\|Ga0137410_10814274	Not Available	785	Open in IMG/M
3300012944\|Ga0137410_11795034	Not Available	541	Open in IMG/M
3300015242\|Ga0137412_10180430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1693	Open in IMG/M
3300015245\|Ga0137409_10085400	Not Available	2942	Open in IMG/M
3300015245\|Ga0137409_11556034	Not Available	511	Open in IMG/M
3300020140\|Ga0179590_1063757	Not Available	965	Open in IMG/M
3300020199\|Ga0179592_10036051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2237	Open in IMG/M
3300020199\|Ga0179592_10379981	Not Available	619	Open in IMG/M
3300021086\|Ga0179596_10053485	Not Available	1685	Open in IMG/M
3300021086\|Ga0179596_10069969	Not Available	1519	Open in IMG/M
3300021086\|Ga0179596_10215199	Not Available	939	Open in IMG/M
3300021170\|Ga0210400_11380861	Not Available	562	Open in IMG/M
3300024347\|Ga0179591_1066225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1538	Open in IMG/M
3300026319\|Ga0209647_1195796	Not Available	716	Open in IMG/M
3300026320\|Ga0209131_1003834	All Organisms → cellular organisms → Bacteria → Proteobacteria	9947	Open in IMG/M
3300026320\|Ga0209131_1044483	All Organisms → cellular organisms → Bacteria → Proteobacteria	2533	Open in IMG/M
3300026320\|Ga0209131_1100052	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300026340\|Ga0257162_1025461	Not Available	719	Open in IMG/M
3300026341\|Ga0257151_1000962	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300026355\|Ga0257149_1000775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2784	Open in IMG/M
3300026355\|Ga0257149_1063536	Not Available	538	Open in IMG/M
3300026355\|Ga0257149_1067436	Not Available	523	Open in IMG/M
3300026356\|Ga0257150_1007524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. KLBC 81	1462	Open in IMG/M
3300026358\|Ga0257166_1052304	Not Available	583	Open in IMG/M
3300026359\|Ga0257163_1003740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2100	Open in IMG/M
3300026359\|Ga0257163_1012976	Not Available	1266	Open in IMG/M
3300026361\|Ga0257176_1025245	Not Available	877	Open in IMG/M
3300026361\|Ga0257176_1057463	Not Available	619	Open in IMG/M
3300026371\|Ga0257179_1005481	Not Available	1185	Open in IMG/M
3300026374\|Ga0257146_1082215	Not Available	526	Open in IMG/M
3300026376\|Ga0257167_1023870	Not Available	889	Open in IMG/M
3300026446\|Ga0257178_1021724	Not Available	768	Open in IMG/M
3300026480\|Ga0257177_1047841	Not Available	659	Open in IMG/M
3300026481\|Ga0257155_1004961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1642	Open in IMG/M
3300026481\|Ga0257155_1020276	Not Available	949	Open in IMG/M
3300026481\|Ga0257155_1045291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	680	Open in IMG/M
3300026482\|Ga0257172_1086583	Not Available	575	Open in IMG/M
3300026489\|Ga0257160_1007716	Not Available	1459	Open in IMG/M
3300026489\|Ga0257160_1081795	Not Available	576	Open in IMG/M
3300026494\|Ga0257159_1100002	Not Available	508	Open in IMG/M
3300026498\|Ga0257156_1060130	Not Available	785	Open in IMG/M
3300026508\|Ga0257161_1001022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5719	Open in IMG/M
3300026508\|Ga0257161_1082171	Not Available	665	Open in IMG/M
3300026508\|Ga0257161_1108180	Not Available	580	Open in IMG/M
3300026514\|Ga0257168_1010497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1755	Open in IMG/M
3300026515\|Ga0257158_1095082	Not Available	585	Open in IMG/M
3300026557\|Ga0179587_10501350	Not Available	796	Open in IMG/M
3300027381\|Ga0208983_1054541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	769	Open in IMG/M
3300027512\|Ga0209179_1009922	Not Available	1647	Open in IMG/M
3300027512\|Ga0209179_1133942	Not Available	554	Open in IMG/M
3300027643\|Ga0209076_1026912	Not Available	1588	Open in IMG/M
3300027643\|Ga0209076_1045407	Not Available	1241	Open in IMG/M
3300027862\|Ga0209701_10307744	Not Available	908	Open in IMG/M
3300027903\|Ga0209488_10005738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9498	Open in IMG/M
3300027903\|Ga0209488_10092473	Not Available	2261	Open in IMG/M
3300027903\|Ga0209488_11015014	Not Available	573	Open in IMG/M
3300028536\|Ga0137415_10093981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2852	Open in IMG/M
3300028536\|Ga0137415_10268242	Not Available	1513	Open in IMG/M
3300032180\|Ga0307471_102776386	Not Available	622	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	99.06%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	63.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	63.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.30%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25613J43889_100159754	3300002907	Grasslands Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATETVMHVHGFTRPMLANLIRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRVPIQGFLEGVSGTAQRHR*
JGI25613J43889_101890081	3300002907	Grasslands Soil	MSHAITVRPRKRHLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK*
JGI25617J43924_103650141	3300002914	Grasslands Soil	DSMTPTSPDLPRPNRRAFPAMATMSHTITVRPRKRHLGGEQSRALRLLACNPFGATETVMHVKSLLCPDASPYSAWFLTAVHIYGFTRQMLARLVRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRSTLLR*
Ga0099791_100382781	3300007255	Vadose Zone Soil	RCIRMSHAITVRPRKRHLGGEQRRALRLLACSQFGATEAVMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK*
Ga0099793_101044012	3300007258	Vadose Zone Soil	MRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0099795_104729191	3300007788	Vadose Zone Soil	MSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRVGLATAQSETGKAIAVGGIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0099795_105576831	3300007788	Vadose Zone Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFKRPMLAKLVRAGLTTGQSETGKAIAVGRITITDAGRKALEG*
Ga0099795_106194131	3300007788	Vadose Zone Soil	PAGLFRDAAMSHTITLRPRKRRLGKEQLRELQLLVCSPFGVTEAVMHVHGFTRPMLAKLVRAGLATVQSETGKAIAVGRITITDAGRRWLEDAAKSELRGPDRFKDFWRE*
Ga0099829_107695431	3300009038	Vadose Zone Soil	LTCPALPAGLFQRCTMLHTITVRPRKRRLGGEQRRALRLLACSPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSESCKAFAVGRIRITDAGRRWLENAA*
Ga0099829_109591431	3300009038	Vadose Zone Soil	HTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0099830_111432481	3300009088	Vadose Zone Soil	MSHTITVRPRKRRLGGEQCRALRLLACNPFGAAEAIMHVHGFTRLMLAKLIRAGLVTAHSETGNTIAVGRIRITDAGRRWLEDAAKSELHGA*
Ga0099830_114386361	3300009088	Vadose Zone Soil	MSHTITMTPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRSLEDAAKSELRGPNRFKDFWRE*
Ga0099828_107468512	3300009089	Vadose Zone Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRVGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRD*
Ga0099792_100309822	3300009143	Vadose Zone Soil	MSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFRRPMLAKLVRAGLATAQSETGKAIAVGSIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0099792_101429622	3300009143	Vadose Zone Soil	MSHTITVRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLAAQNETGKAIAVGRIRITDVGRRWLEDAAK*
Ga0137392_107883481	3300011269	Vadose Zone Soil	MSHAITVRPRKRRLGGEQCRALRLLACNPFGAAEAIMHVHGFTRLMLAKLIRAGLVTAHSETGKAIAVGRIRITDVGRRWLEDAAK*
Ga0137392_111849011	3300011269	Vadose Zone Soil	KRRLGGEQSRALRLLACGPFGVTEAVMHVHGFTRPMLAKLVRAGLATAQSETGKTIAVGRIRITDVGRRAIRG*
Ga0137391_100457577	3300011270	Vadose Zone Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRGLEDAAKSELRGPNRFKDFWR*
Ga0137393_1000422120	3300011271	Vadose Zone Soil	MSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137393_105241981	3300011271	Vadose Zone Soil	MSHTITVRPRKRRLGGEQSRALRLLACGPFGVTEAVMHVHGFTRPMLAKLVSAGLATAQSETGKTIAVGRIRITDVGRR
Ga0137393_108433251	3300011271	Vadose Zone Soil	MLHTITVRPRKRHLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK*
Ga0137389_104622531	3300012096	Vadose Zone Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSESCKAFAVGRIRITDAGRRWLENAA*
Ga0137388_100899451	3300012189	Vadose Zone Soil	ARTGGAFPAMPTMSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSESCKAFAVGRIRITDAGRRWLENAA*
Ga0137388_103088221	3300012189	Vadose Zone Soil	ARTGGAFPAMPTMSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137363_100634856	3300012202	Vadose Zone Soil	MPHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWL
Ga0137363_102947152	3300012202	Vadose Zone Soil	MSHTITVRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRVGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137363_103102451	3300012202	Vadose Zone Soil	MTLTSPDLPRPNRRGFTRDATMSHTITVRPRKRRLGGEQRRALQLLACSPFVAGEVIMLTHGFTPRTLADLVRAGLATAQRETAKADRRSVGGRVRTTEAGRRVIQD*
Ga0137362_108972001	3300012205	Vadose Zone Soil	MSHTITVRPRKRRLGGEQLRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRAGLANVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDLWRE*
Ga0137360_100930582	3300012361	Vadose Zone Soil	MRPRKRRLGGEKRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137360_102180301	3300012361	Vadose Zone Soil	MSDAITVRPRKRRLGGEQRRALRLLACSPFGVTEAVMHVHGFTRSMLAKLVRAGLATVQSETGKAIAIGRIRITDAGRWWLEDAAKSELRGPNRFKDFW
Ga0137360_107640621	3300012361	Vadose Zone Soil	MPAPSRKRHLGGEQRRALRLLACNPFGATETVMHVHGFTRPMLANLVRAGLATAQSETGKAIAVGRIRITDAGRRALE
Ga0137398_101672132	3300012683	Vadose Zone Soil	MPAPSRKRHLGGEQRRALRLLACNPFGATETVMHVHGFTRPMLANLVRAGLATAQSETGKAIAVGRIRITDAGRRALEG*
Ga0137398_108776372	3300012683	Vadose Zone Soil	RPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKVVRVGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137397_107126461	3300012685	Vadose Zone Soil	MSHTITVRPRKRRLGGEQCRALRLLACNPFGAAEAIMHVHGFTRLMLAKLIRAGLVTAHSETGNTIAVGRIRITDAGRRWLEDAAKSEL
Ga0137395_100361974	3300012917	Vadose Zone Soil	MSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITEAGRRWVEDAGKSERRGPNRWKEFWRG*
Ga0137395_101145041	3300012917	Vadose Zone Soil	MSHAITVRPRKRRLGGEERRALRLLACNPFGATEAIMHVHGFRRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRWLENAAKS
Ga0137395_108809072	3300012917	Vadose Zone Soil	MSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMYVHGFRRLMLAKLVRVGLATAQSETSKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137359_102513533	3300012923	Vadose Zone Soil	MSHTITVRLRKRLGGEQRRALRLLACNPFGLTEAIMHLHGFTRPMLATLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEEVAKSELRGPNRFKNFWQE*
Ga0137359_103478432	3300012923	Vadose Zone Soil	MSHTITVTPRKRPLNPVQRRALQLLACNPFGATEAIMHIHGFTRQMLAKLVRAGLTTVQSETGKAIAVGRIRITDAGRRGLE
Ga0137359_106812621	3300012923	Vadose Zone Soil	ITVRPRKRHLGGEQRRALRLLACSPFGATEAILHVHGFTRKILAKLISAGLATGQSETGKEIAVGLIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137413_105249442	3300012924	Vadose Zone Soil	MRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE*
Ga0137413_107574552	3300012924	Vadose Zone Soil	RPRKRRLGKEQLRALQLLVCSPFGVTEAVMHVHGFTRSMLAKLVRAGLGTVQRETGKEIAVGRIRITDAGRRWLEDAAKSELRGPNRSKDFWRE*
Ga0137413_114581521	3300012924	Vadose Zone Soil	MSHAITVRPRKRHLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRVGLATAQSETSKAIAVGRIRITDAGRRAIEG*
Ga0137419_102806382	3300012925	Vadose Zone Soil	MSHTITVRARKHRLGGEQCRALRLLACNPFGATEAIMHVHGFTRLMLAKLIRAGLVTAHSETGNTIAVGRIRITDAGRRWLEDAAKSELHGA*
Ga0137419_106695461	3300012925	Vadose Zone Soil	MSHTITVRPRKRRLGGEERRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRAGLATAQSETGKAIAVGHIRITDAGRRWLEDAAKSELRGPNRF
Ga0137416_101875942	3300012927	Vadose Zone Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFRRPMLAKLVRAGLATAQSETGKAIAVGSIRITDAGRRWLEDAAKSELRGPHRFKDFWRE*
Ga0137410_101435541	3300012944	Vadose Zone Soil	MLHTITVRPRKRRLGGEQSRALRLLACGPFGVTEAVMHVHGFTRPLLAKLVSAGLATAQSETGKTIAVGRIRITDVGRSAIEG*
Ga0137410_108142741	3300012944	Vadose Zone Soil	MSHTITLRPRKRRLGKEQLRALQLLVCSPFGVTEAVMHVHGFTRSMLAKLVRAGLGTVQRETGKEIAVGRIRITDAGRRWLEDAAKSELRGPNRSKDFWRE*
Ga0137410_117950341	3300012944	Vadose Zone Soil	MSHTITVRPRKRRLGGEQRRALRLLACNPFGVTEAVMHVHGFTRPMLATLVRAGLATAQSETDKAIAVGRIRITDAGRRWLEDAAKSELGVRT
Ga0137412_101804302	3300015242	Vadose Zone Soil	MRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRALEG*
Ga0137409_100854004	3300015245	Vadose Zone Soil	MSHTLTVRPRKRHLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK*
Ga0137409_115560341	3300015245	Vadose Zone Soil	MSHTLTVRPRKRHLGGEQSRALRLLACGPFGVTEAVMHVHGFRRPMLAKLVRARLATVQSETGKAIAVGRITITDAGRKALEG*
Ga0179590_10637571	3300020140	Vadose Zone Soil	MSHTITVRPRKRRLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRVPIQGFLEGVSGTAQRHR
Ga0179592_100360513	3300020199	Vadose Zone Soil	MSHAITVRPRKRHLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK
Ga0179592_103799811	3300020199	Vadose Zone Soil	HTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFRRPMLAKLVRAGLATAQSETGKAIAVGSIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0179596_100534853	3300021086	Vadose Zone Soil	MSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0179596_100699692	3300021086	Vadose Zone Soil	MPKMSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRAIEG
Ga0179596_102151991	3300021086	Vadose Zone Soil	MSHTITLRPRKRRLGKEQLRALQLLVCSPFGVTEAVMHVHGFTRSMLAKLVRAGLGTVQRETGKEIAVGRIRITDAGRRWLEDAAKSELRGPNRSKDFWRE
Ga0210400_113808611	3300021170	Soil	GLSGDATMSHATVRLRKRPLGSELRRALRLLACSPLGVTEAVMHVHGFTRPMLAKLVRAGLATTAQRETVKTDGQSVGRVRITEAGRRVIEG
Ga0179591_10662251	3300024347	Vadose Zone Soil	LPRPNRRGFSAMLTMSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRVGLATAQSETSKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0209647_11957961	3300026319	Grasslands Soil	MTLTSPDLPGPNRRGFTRDATMSHTITVRLRKRRLGGEQRRALRLLACNPFGATETVMHVHGFTRPMLANLIRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRVPIQGFLEGVSGTAQRHR
Ga0209131_100383414	3300026320	Grasslands Soil	MSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVQGFTRQMLAKLVRAGLANVQSETGKAIAVGSIRITDAGRRWLEDAAKSELRGPNRFKDFWR
Ga0209131_10444832	3300026320	Grasslands Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATETVMHVHGFTRPMLANLIRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRVPIQGFLEGVSGTAQRHR
Ga0209131_11000524	3300026320	Grasslands Soil	NRRGFSAMLTMSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRVGLATAQSETSKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257162_10254611	3300026340	Soil	PPLTCPARTGGAFPAMPTMSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257151_10009623	3300026341	Soil	MPTMSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRAIEG
Ga0257149_10007751	3300026355	Soil	MTPTSPDLPGPNRRGFTRDATMSHTITVRPRKRRLGGEQSRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQSETGKAIAVGHIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257149_10635361	3300026355	Soil	MSYTITVTPRERRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRAIEG
Ga0257149_10674361	3300026355	Soil	RKHRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLATLVRAGLATAQSETGKAIAVGHIRITDAGRPWLENAAKSELRGPNRLKDFWRE
Ga0257150_10075242	3300026356	Soil	MTLTSPDLPRPNRRGFSRDATMSHTITVRPRKRRLGGEQRRALRLLAISPFGATEAIMHTHGFTRQMLAKLVRAGLATAQSETGKAIAVGRIRITDAGGLVLEDATKSERRGRREEGAVALGTCRCGRR
Ga0257166_10523041	3300026358	Soil	AFPATPKMSYTITVTPRERRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRITITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257163_10037402	3300026359	Soil	MSHTITVRPRKRRLGGEQCRALRLLACNPFGAAEAIMHVHGFTRLMLAKLIRAGLVTAHSETGNTIAVGRIRITDAGRRWLEDAAKSELYGA
Ga0257163_10129761	3300026359	Soil	MTPTSPDLPGPNRRGSTRDATMSHTITVRPRKRRLGGEQRRALRLLAISPFGATEAIMHTHGFTRQMLAKLVRAGLATAQSETGKAIAVGRIRITDAGGLVLEDATKSERRGRREEGAVALGTCRCGRR
Ga0257176_10252451	3300026361	Soil	TMPTMSHTLTVRPRKRHLGAEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRAIEG
Ga0257176_10574631	3300026361	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFKRPMLAKLVRAGLTTGQSETGKAIAVGRITITDAGRKALEG
Ga0257179_10054812	3300026371	Soil	MTLTSPDLPGPNRRGFTRDATMSHTITVRPRKRRLGGEQRRALRLLACNPFGVTEAVMHVHGFTRPMLATLVRAGLATAQSETDKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257146_10822151	3300026374	Soil	MTNTSPDLPRPNRRGFSPLPTMSHTITVRSRKRRLGGEQSRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK
Ga0257167_10238701	3300026376	Soil	MSYTITVTPRERRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFW
Ga0257178_10217241	3300026446	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFRRPMLAKLVRAGLATAQSETGKAIAVGTIRITDAGRRWLEDAAKSELRGP
Ga0257177_10478411	3300026480	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSE
Ga0257155_10049611	3300026481	Soil	MPKMSHTITVRPRKHRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLATLVRAGLATAQSETGKAIAVGHIRITDAGRPWLENAAKSELRGPNRLKDFWRE
Ga0257155_10202762	3300026481	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMYVHGFRRLMLAKLVRVGLATAQSETSKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257155_10452911	3300026481	Soil	GGEQRRALRLLACNPFGATETVMHVHGFRRPMLANLVRAGLATAQSETGKEIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFRRE
Ga0257172_10865831	3300026482	Soil	SPDLPGPNRRGFTRDATMSHTITVRPRKRRLGGEQRRALRLLAISPFGATEAIMHTHGFTRQMLAKLVRAGLATAQSETGKAIAVGRIRITDAGGLVLEDATKSERRGRREEGAVALGTCRCGRR
Ga0257160_10077162	3300026489	Soil	MTPTSPDLPGPNRRGSTRDATMSHTITVRPRKRRLGGEQRRALRLLACSPFGVTEAVMHVHGFTRPMLAKLVRAGLATVQSETGKAIAVGRIRITDAGQRWLEDAAKSELRGPKRFKASWRK
Ga0257160_10817951	3300026489	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLATLVRAGLATAQSETGKAIAVGHIRITDAGR
Ga0257159_11000021	3300026494	Soil	KHRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLATLVRAGLATAQSETGKAIAVGHIRITDAGRPWLENAAKSELRGPNRLKDFWRE
Ga0257156_10601301	3300026498	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKD
Ga0257161_10010223	3300026508	Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMYVHGFRRLMLAKLVRAGLATAQSETGKAIAVGSIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0257161_10821711	3300026508	Soil	MSHTITVRPRKRLGGEQRRALRLLACNPFGVTEAIMHVHGFTRPMLATLVRAGLATVQSETGKAIAVGRIRIMDAG
Ga0257161_11081801	3300026508	Soil	MTNTSPDLPRPNRRGFSPLPTMSHTITVRSRKRRLGGEQSRALRLLACGPFGVTEAVMHVHGFTRPMLAKLVSAGLATAQSETGKTIAVGRIRITDVGRRAIEG
Ga0257168_10104974	3300026514	Soil	MSYTITVTPRERRLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATVQSETGKAIAVGRITITDAGRRWLEDAAKSELR
Ga0257158_10950821	3300026515	Soil	MLHTITVRPRKRRLGGEQRRALRLLACSPFGVTEAVMHVHGFTRPMLAKLVRAGLATVQSETGKAIAVGRITITDAGRRWLEDAAKSELRGPDRFKDFWRE
Ga0179587_105013501	3300026557	Vadose Zone Soil	LGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATGQSETGKAIAVGGIRITDAGQRWLEDAAKSELRGPNRFKASWRK
Ga0208983_10545411	3300027381	Forest Soil	MPTMSHTITVRPRKRHLGGEQRRALRLLACSPFGVTEAVMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0209179_10099223	3300027512	Vadose Zone Soil	MPTMSHTITMRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGQRRLEDAAKSELRGPKRFKASWRK
Ga0209179_11339422	3300027512	Vadose Zone Soil	TRDATMSHTITVRLRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRVGLATAQSETGKAIAVGGIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0209076_10269121	3300027643	Vadose Zone Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSETGKAIAVGRIRITDAGRRAIEG
Ga0209076_10454072	3300027643	Vadose Zone Soil	MSHAITVRPRKRRLGGEQRRALRLLACNPFGATEAIMHVHGFTLPIFAKLVRAGLATVQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0209701_103077441	3300027862	Vadose Zone Soil	MSHTITVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRPMLAKLVRAGLATAQSESCKAFAVGRIRITDAGRRWLE
Ga0209488_1000573811	3300027903	Vadose Zone Soil	TSPALTGGAFPRCIRMSHAITVRPRKRHLGGEQRRALRLLACSPFGATEAVMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK
Ga0209488_100924732	3300027903	Vadose Zone Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFRRPMLAKLVRAGLATAQSETGKAIAVGSIRITDAGRRWLEDAAKSELRGPNRFKDFWRE
Ga0209488_110150141	3300027903	Vadose Zone Soil	MSHTITVRPRKRRLGGEQCRALRLLACNPFGAAEAIMHVHGFTRLMLAKLIRAGLVTAHSETGNTIAVGRIRITDAGRRWLE
Ga0137415_100939813	3300028536	Vadose Zone Soil	MPTMSHTLTVRPRKRHLGGEQRRALRLLACNPFGATEAIMHVHGFTRQMLAKLVRAGLATAQTETGKAIAVGRIRITDVGRRWLEDAAK
Ga0137415_102682422	3300028536	Vadose Zone Soil	MSHTSTVRPRKRRLGGEQSRALRLLACSPFGVTEAVMHVHGFTRPILAKLVRVGFATAQSETGKTIAVGRIRITDVGRRAIEG
Ga0307471_1027763861	3300032180	Hardwood Forest Soil	MSHTITVRPRKRLGDEQSRALRLLACSPFGATEAVMHVHGFTRTILAKLVRVGLATAQSETGKAIAVGRIRITDAGRRWLEDAAKSELRGPNR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093336

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences