Metagenome Family F093368

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093368
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	48 residues
Representative Sequence	VISREDLSVAEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Number of Associated Samples	8
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	2.83 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (88.679 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (52.830 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.79% β-sheet: 0.00% Coil/Unstructured: 59.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13456	RVT_3	14.15
PF00665	rve	13.21
PF00078	RVT_1	11.32
PF04195	Transposase_28	4.72
PF05938	Self-incomp_S1	2.83
PF07727	RVT_2	2.83
PF08284	RVP_2	1.89
PF13952	DUF4216	1.89
PF13960	DUF4218	1.89
PF13041	PPR_2	1.89
PF10536	PMD	0.94
PF14223	Retrotran_gag_2	0.94
PF02309	AUX_IAA	0.94
PF05699	Dimer_Tnp_hAT	0.94
PF00098	zf-CCHC	0.94
PF00069	Pkinase	0.94
PF01535	PPR	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	13.21
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	13.21
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	13.21
COG4584	Transposase	Mobilome: prophages, transposons [X]	13.21
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
All Organisms	root	All Organisms	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
cellular organisms	root	All Organisms → cellular organisms	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
NPAAA clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
indigoferoid/millettioid clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Phaseoleae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Vigna	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	10.38 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006943\|Ga0099822_1002886	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	21754	Open in IMG/M
3300006943\|Ga0099822_1004128	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	18832	Open in IMG/M
3300006943\|Ga0099822_1007982	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	13590	Open in IMG/M
3300006943\|Ga0099822_1015269	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	8657	Open in IMG/M
3300021320\|Ga0214544_1004594	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	27591	Open in IMG/M
3300021320\|Ga0214544_1004868	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	26559	Open in IMG/M
3300021320\|Ga0214544_1004872	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	26540	Open in IMG/M
3300021320\|Ga0214544_1006548	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	21381	Open in IMG/M
3300021320\|Ga0214544_1012749	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	10705	Open in IMG/M
3300021320\|Ga0214544_1023270	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3503	Open in IMG/M
3300021321\|Ga0214542_1004678	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	26882	Open in IMG/M
3300021327\|Ga0214543_1009231	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	15516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	52.83%
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	47.17%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated	Open in IMG/M
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated	Open in IMG/M
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated	Open in IMG/M
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated	Open in IMG/M
3300021324	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4	Host-Associated	Open in IMG/M
3300021327	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2	Host-Associated	Open in IMG/M
3300027296	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)	Host-Associated	Open in IMG/M
3300027357	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_100025235	3300006943	Root Nodules	MADKEVVDAVMLFSDKTPTKGLVRVYNLVHPIIDSECIFLYFLVLYCV*
Ga0099822_100050962	3300006943	Root Nodules	VISRDLSVAGKEVMDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_100124822	3300006943	Root Nodules	VISREDLSVAEKEVVDTSMRFSDKMPTKGLVRVYNSVHPIIDIEDIFL*
Ga0099822_100204010	3300006943	Root Nodules	MAREKLSVADREVVDAVMLFRDKMLTKALVRVYNSVHPIIDIEGIFLYF*
Ga0099822_100215128	3300006943	Root Nodules	MVREELSVVDKEVVDVVMQFSDKMPTKGLVRVYNSVHPIIDIEGIFLYF*
Ga0099822_100252628	3300006943	Root Nodules	VILREDLSVGEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGTFFVTLSIVIDWSI*
Ga0099822_100288633	3300006943	Root Nodules	MTREKLSVADREVVDVVMQFNDKMPTKGLVRVYNSVHPIIDIKGIFLYF*
Ga0099822_100314512	3300006943	Root Nodules	VADKEVVDTMVLFSDKMPTKGLVRVYNSVHPIIDIEGIFM*
Ga0099822_100353425	3300006943	Root Nodules	MTREELSVADKEVVRAVMQFSNKMPTKGLVRVYNLVHPIIDIEGIFFVFLSVILCLS*
Ga0099822_100361346	3300006943	Root Nodules	MEREELSVADKEVVDAVMLFSDKMPIKGLVRVYNLVHPIIDIEGIFLYF*
Ga0099822_100412843	3300006943	Root Nodules	WTGNPWRYKVISREDLSVGEKEVVDTLMQFSDKMPTKGLVRLYNSVHPIIDIEGIFLKL*
Ga0099822_100461324	3300006943	Root Nodules	MAREELSVADWEVVDAVMLFSDKMPTKGLVRVYNLVHPIIDIEGIFLYFSVLHCV*
Ga0099822_100610323	3300006943	Root Nodules	VAEKEVVDTLMQFSDKMPTKGIVRVYNLVHPIINIEGIFL*
Ga0099822_100798226	3300006943	Root Nodules	VISREDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHTIIDIEGIFL*
Ga0099822_10080814	3300006943	Root Nodules	MAGEELSVADKEVVDAVMLFSDKMPTKGLIRIYNSVHPIIDIEGIFLYF*
Ga0099822_100907926	3300006943	Root Nodules	VISREDLSVAEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_10093331	3300006943	Root Nodules	VISREDLLVVEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_101080621	3300006943	Root Nodules	VILREDLSVVEKEVVDTLMRFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_101370811	3300006943	Root Nodules	MAREELSVADQEVVDAVMLFSDKMPTKGLFRVYNSIHPIIDIEGIFSYF*
Ga0099822_101379113	3300006943	Root Nodules	MAREDLLVVDKEVVDAVMLFSDKMPTKGLVRVYNSVHPIMDIEGIFL*
Ga0099822_10141838	3300006943	Root Nodules	MTREELSVADREVVDVVMQFSDKMPTKGLVRVYNSVHPIIDIEGIFLYF*
Ga0099822_101526915	3300006943	Root Nodules	VDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_10155422	3300006943	Root Nodules	VADREVVDAVMRFSDKMPTKGLIRVYNSVHPIIDIEGIFLYF*
Ga0099822_10175916	3300006943	Root Nodules	MGTNELSVVDKEVLMKFTDKLPIKGLVRVYNSVHQIIDIEGIYLLLKLC*
Ga0099822_10178717	3300006943	Root Nodules	MAREELSMFDKEVVDVVMQFSDKMPIKGLVRVYNSVHPIIDIEGIFLYF*
Ga0099822_10179434	3300006943	Root Nodules	VILREDLSVTEKEVVDTLMQFSDKIPTKGLVRVYNLVHPIIYIEGSFL*
Ga0099822_101940410	3300006943	Root Nodules	VISREDLSVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIKGIFL*
Ga0099822_10205336	3300006943	Root Nodules	MAREELSVADREVVDAVIIFSNKMPTKGLVRVYNSVHPIIDIEGIFLYI*
Ga0099822_102180410	3300006943	Root Nodules	MKREELSVADREVVDNLMKFNDKMPTKGLIRVYNSIHPIVDIKGIFFFVFLSVILYLS*
Ga0099822_10229124	3300006943	Root Nodules	MAEKELPREDLSVADKEVVDTVMLFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_10268082	3300006943	Root Nodules	VISREDLSVGEKDVVDTLMQFSNKMPTKGLVKVYNSVHPIIDIEGIFL*
Ga0099822_10269877	3300006943	Root Nodules	VADREVVDAVMLFSDKMPTKGLVRVYNSVHLIIDIEGIFLYI*
Ga0099822_10324867	3300006943	Root Nodules	VILKEDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_10335036	3300006943	Root Nodules	VADKEVVDAVMLFNDKMPTKGLVRVYNTVHPIIDIDSIALYF*
Ga0099822_10393745	3300006943	Root Nodules	MEREELLVADKEVMDAMMLFSDKMSTKGLVRVYNSVHPIIDIEGIFLYF*
Ga0099822_10464631	3300006943	Root Nodules	VISREDLSVGKKDVVDTLMQFSDKMPTKGLVRVYNSVHPILDIEGIFFCNFECCY*
Ga0099822_10474343	3300006943	Root Nodules	VISREDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0099822_10478691	3300006943	Root Nodules	MDELSAGDKEVVEILLKFVDKLPIKGLVRVYNSVHPIIDIEGICLLLKLC*
Ga0099822_10489113	3300006943	Root Nodules	MAREELSVADKKVVDAMMLFSDKMPTKGLVRVYNLVHPIIDIEGIFL*
Ga0099822_10583062	3300006943	Root Nodules	VVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIE
Ga0099822_10697433	3300006943	Root Nodules	MAREELLVADKEVVDAMMLFSDKMPTKGLVRVYNLVHLIIDFEGIFL*
Ga0099822_10885452	3300006943	Root Nodules	SVGEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFFCNFEHCN*
Ga0099823_10700065	3300006944	Root Nodules	WRYKVISREDLSVGEKEVVDTLMQFSDKMPTKGLVRLYNSVHPIIDIEGIFLKL*
Ga0099823_10715871	3300006944	Root Nodules	SVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIKGIFL*
Ga0099823_10766071	3300006944	Root Nodules	REDLSVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFLQL*
Ga0099823_11155911	3300006944	Root Nodules	MAREELLVADREVVDAVMRFSDKMPTKGLIRVYNSVHPIIDIEGIFLYFVLYCVVV*WMCVV
Ga0099823_11345391	3300006944	Root Nodules	VISREDLLVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL*
Ga0214544_100042951	3300021320	Root Nodules	MADKEVVDAVMLFSDKTPTKGLVRVYNLVHPIIDSECIFLYFLVLYCV
Ga0214544_100046557	3300021320	Root Nodules	VISRDLSVAGKEVMDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_100129812	3300021320	Root Nodules	MAREELSMFDKEVVDVVMQFSDKMPIKGLVRVYNSVHPIIDIEGIFLYF
Ga0214544_100335430	3300021320	Root Nodules	MEREELSVADKEVVDAVMLFSDKMPIKGLVRVYNLVHPIIDIEGIFLYF
Ga0214544_10037636	3300021320	Root Nodules	MAREKLSVADREVVDAVMLFRDKMLTKALVRVYNSVHPIIDIEGIFLYF
Ga0214544_100423121	3300021320	Root Nodules	VISREDLSVAEKEVVDTSMRFSDKMPTKGLVRVYNSVHPIIDIEDIFL
Ga0214544_100457615	3300021320	Root Nodules	MGTNELSVVDKEVLMKFTDKLPIKGLVRVYNSVHQIIDIEGIYLLLKLC
Ga0214544_100459411	3300021320	Root Nodules	VADKEVVDTMVLFSDKMPTKGLVRVYNSVHPIIDIEGIFM
Ga0214544_100486819	3300021320	Root Nodules	MTREKLSVADREVVDVVMQFNDKMPTKGLVRVYNSVHPIIDIKGIFLYF
Ga0214544_100487225	3300021320	Root Nodules	VISREDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHTIIDIEGIFL
Ga0214544_100523420	3300021320	Root Nodules	MVREELSVVDKEVVDVVMQFSDKMPTKGLVRVYNSVHPIIDIEGIFLYF
Ga0214544_100595220	3300021320	Root Nodules	VILREDLSVGEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGTFFVTLSIVIDWSI
Ga0214544_100635524	3300021320	Root Nodules	MAREELSVADWEVVDAVMLFSDKMPTKGLVRVYNLVHPIIDIEGIFLYFSVLHCV
Ga0214544_10065485	3300021320	Root Nodules	VISREDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_10070084	3300021320	Root Nodules	MTREELSVADKEVVDVVMQFSDKMPTKGLVRVYNSVHLIIDIEGIFLYF
Ga0214544_100710221	3300021320	Root Nodules	MTREELSVADKEVVRAVMQFSNKMPTKGLVRVYNLVHPIIDIEGIFFVFLSVILCLS
Ga0214544_10072287	3300021320	Root Nodules	MAGEELSVADKEVVDAVMLFSDKMPTKGLIRIYNSVHPIIDIEGIFLYF
Ga0214544_10089612	3300021320	Root Nodules	MKREELSVADREVVDNLMKFNDKMPTKGLIRVYNSIHPIVDIKGIFFFVFLSVILYLS
Ga0214544_10091695	3300021320	Root Nodules	VAEKEVVDTLMQFSDKMPTKGIVRVYNLVHPIINIEGIFL
Ga0214544_10096796	3300021320	Root Nodules	VILREDLSVVEKEVVDTLMRFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_10104653	3300021320	Root Nodules	VADKEVVDAVMLFNDKMPTKGLVRVYNTVHPIIDIDSIALYF
Ga0214544_101051914	3300021320	Root Nodules	VISREDLLVVEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_101088312	3300021320	Root Nodules	MAREELSVADQEVVDAVMLFSDKMPTKGLFRVYNSIHPIIDIEGIFSYF
Ga0214544_10110922	3300021320	Root Nodules	VISREDLSVAEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_10114694	3300021320	Root Nodules	VISKEDLSVVNKEVVDTVMLFSDKMSTKGLVRVYNSVHPIIDIEVIFL
Ga0214544_101274917	3300021320	Root Nodules	SVVEKAVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_101290712	3300021320	Root Nodules	MAREDLLVVDKEVVDAVMLFSDKMPTKGLVRVYNSVHPIMDIEGIFL
Ga0214544_10139624	3300021320	Root Nodules	MTREELSVADREVVDVVMQFSDKMPTKGLVRVYNSVHPIIDIEGIFLYF
Ga0214544_10154329	3300021320	Root Nodules	MAREELSVADREVVDAVIIFSNKMPTKGLVRVYNSVHPIIDIEGIFLYI
Ga0214544_10164394	3300021320	Root Nodules	VILKEDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214544_10184322	3300021320	Root Nodules	VISREDLSVGKKDVVDTLMQFSDKMPTKGLVRVYNSVHPILDIEGIFFCNFECCY
Ga0214544_10196762	3300021320	Root Nodules	VISREDLSVGEKDVVDTLMQFSNKMPTKGLVKVYNSVHPIIDIEGIFL
Ga0214544_10227974	3300021320	Root Nodules	MAREELSVADKKVVDAMMLFSDKMPTKGLVRVYNLVHPIIDIEGIFL
Ga0214544_10232704	3300021320	Root Nodules	MGMDELSAGDKEVVEILLKFVDKLPIKGLVRVYNSVHPIIDIEGICLLLKLC
Ga0214544_10237754	3300021320	Root Nodules	MAREELLVADKEVVDAMMLFSDKMPTKGLVRVYNLVHLIIDFEGIFL
Ga0214544_10252433	3300021320	Root Nodules	MEREELLVADKEVMDAMMLFSDKMSTKGLVRVYNSVHPIIDIEGIFLYF
Ga0214544_10304773	3300021320	Root Nodules	VADKEVVDTVMLFSDKMPTKGLIRVYNSVHSIIDIEGIFL
Ga0214542_100467832	3300021321	Root Nodules	VISREDLSVGEKELVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214542_100647810	3300021321	Root Nodules	MVREELSVADREVVDAVMLFSDKMPTKGLVRVYNSVHLIIDIEGIFLYI
Ga0214542_10179627	3300021321	Root Nodules	MAEKELPREDLSVADKEVVDTVMLFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214542_10221721	3300021321	Root Nodules	VVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDI
Ga0214542_10242323	3300021321	Root Nodules	SREDLSVVEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214542_10317604	3300021321	Root Nodules	MDELSAGDKEVVEILLKFVDKLPIKGLVRVYNSVHPIIDIEGICLLLKLC
Ga0214545_100287729	3300021324	Root Nodules	KVISREDLSVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214545_100541214	3300021324	Root Nodules	VILREDLSVTEKEVVDTLMQFSDKIPTKGLVRVYNLVHPIIYIEGSFL
Ga0214545_10104111	3300021324	Root Nodules	VISREDLLVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214545_10338151	3300021324	Root Nodules	KVISREDLSVGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIKGIFL
Ga0214545_10365103	3300021324	Root Nodules	VVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0214543_10092316	3300021327	Root Nodules	VADREVVDAVMLFSDKMPTKGLVRVYNSVHLIIDIEGIFLYI
Ga0214543_101932212	3300021327	Root Nodules	GEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0209389_100304511	3300027296	Root Nodules	MEDLSVADKEVVDTMVLFSDKMPTKGLVRVYNSVHPIIDIEGIFM
Ga0209389_10245413	3300027296	Root Nodules	VADREVVDAVMRFSDKMPTKGLIRVYNSVHPIIDIEGIFLYF
Ga0209389_10279001	3300027296	Root Nodules	MKREELSVADREVVDNLMKFNDKMPTKGLIRVYNSIHPIVDIKGIFFFV
Ga0209389_10692672	3300027296	Root Nodules	VISREDLSVGEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFFVT
Ga0209389_10715414	3300027296	Root Nodules	DVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFL
Ga0209389_10818501	3300027296	Root Nodules	VGEKDVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIKGIFL
Ga0209589_10067221	3300027357	Root Nodules	FWTGNPWRYKVISREDLSVGEKEVVDTLMQFSDKMPTKGLVRVYNSVHPIIDIEGIFFCNFEHCN
Ga0209589_10323752	3300027357	Root Nodules	VEDLSVADKEVVDTVMLFSDKMPTKGLIRVYNSVHSIIDIEGIFL
Ga0209589_10403254	3300027357	Root Nodules	FWTGNPWRYKVISREDLSVGEKEVVDTLMQFSDKMPTKGLVRLYNSVHPIIDIEGIFLKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093368

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences