Metagenome Family F093409

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093409
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	57 residues
Representative Sequence	MDEYAEDSEAPMTFKEFRTLAWEAANEKARDLGWVKSCDELHEAVKRAGGAP
Number of Associated Samples	85
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	17.14 %
% of genes near scaffold ends (potentially truncated)	66.98 %
% of genes from short scaffolds (< 2000 bps)	93.40 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.528 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.321 % of family members)
Environment Ontology (ENVO)	Unclassified (33.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.604 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.75% β-sheet: 0.00% Coil/Unstructured: 61.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF09361	Phasin_2	4.72
PF13557	Phenol_MetA_deg	2.83
PF07486	Hydrolase_2	1.89
PF00043	GST_C	1.89
PF07883	Cupin_2	0.94
PF07690	MFS_1	0.94
PF01568	Molydop_binding	0.94
PF04366	Ysc84	0.94
PF11752	DUF3309	0.94
PF07369	DUF1488	0.94
PF00034	Cytochrom_C	0.94
PF03734	YkuD	0.94
PF01545	Cation_efflux	0.94
PF00571	CBS	0.94
PF09723	Zn-ribbon_8	0.94
PF16916	ZT_dimer	0.94
PF00768	Peptidase_S11	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	1.89
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	1.89
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.94
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.94
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.94
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
All Organisms	root	All Organisms	25.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
cellular organisms	root	All Organisms → cellular organisms	25.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.70 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.92 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.09 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.94 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	9.43 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.89 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.89 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.94 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	4.72 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	4.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.89 %
Amaricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus	0.94 %
Mitsuaria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria	0.94 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	4.72 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	4.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.89 %
unclassified Amaricoccus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus → unclassified Amaricoccus	0.94 %
unclassified Mitsuaria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria	0.94 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.53 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	4.72 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	4.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.89 %
Amaricoccus sp. HAR-UPW-R2A-40	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus → unclassified Amaricoccus → Amaricoccus sp. HAR-UPW-R2A-40	0.94 %
Mitsuaria sp. H24L5A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria → Mitsuaria sp. H24L5A	0.94 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_11555063	Not Available	810	Open in IMG/M
2189573001\|GZR05M102G2HX1	Not Available	510	Open in IMG/M
3300000041\|ARcpr5oldR_c026542	Not Available	534	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13572792	Not Available	620	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100527508	Not Available	661	Open in IMG/M
3300000891\|JGI10214J12806_10344929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2534	Open in IMG/M
3300000891\|JGI10214J12806_12190493	Not Available	654	Open in IMG/M
3300000955\|JGI1027J12803_104201745	Not Available	530	Open in IMG/M
3300004114\|Ga0062593_101428914	Not Available	741	Open in IMG/M
3300004157\|Ga0062590_101018658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	789	Open in IMG/M
3300004463\|Ga0063356_100691711	Not Available	1400	Open in IMG/M
3300004463\|Ga0063356_105127357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria → Mitsuaria sp. H24L5A	563	Open in IMG/M
3300004479\|Ga0062595_101039272	Not Available	709	Open in IMG/M
3300004479\|Ga0062595_101945241	Not Available	565	Open in IMG/M
3300004481\|Ga0069718_14974233	Not Available	557	Open in IMG/M
3300005093\|Ga0062594_103288930	Not Available	507	Open in IMG/M
3300005332\|Ga0066388_104827414	Not Available	686	Open in IMG/M
3300005332\|Ga0066388_105257239	Not Available	657	Open in IMG/M
3300005347\|Ga0070668_101435247	Not Available	630	Open in IMG/M
3300005458\|Ga0070681_11137069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Amaricoccus → unclassified Amaricoccus → Amaricoccus sp. HAR-UPW-R2A-40	702	Open in IMG/M
3300005539\|Ga0068853_100690404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	973	Open in IMG/M
3300005548\|Ga0070665_101301931	Not Available	737	Open in IMG/M
3300005615\|Ga0070702_100106736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1728	Open in IMG/M
3300005713\|Ga0066905_101273055	Not Available	660	Open in IMG/M
3300005842\|Ga0068858_101236095	Not Available	734	Open in IMG/M
3300006086\|Ga0075019_10905246	Not Available	566	Open in IMG/M
3300006102\|Ga0075015_100996529	Not Available	512	Open in IMG/M
3300006871\|Ga0075434_100434001	Not Available	1335	Open in IMG/M
3300009053\|Ga0105095_10075421	Not Available	1820	Open in IMG/M
3300009094\|Ga0111539_12398190	Not Available	612	Open in IMG/M
3300009094\|Ga0111539_12824361	Not Available	562	Open in IMG/M
3300009146\|Ga0105091_10255751	Not Available	846	Open in IMG/M
3300009147\|Ga0114129_11569120	Not Available	807	Open in IMG/M
3300009148\|Ga0105243_10748459	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300009148\|Ga0105243_12994286	Not Available	512	Open in IMG/M
3300009156\|Ga0111538_10321032	Not Available	1960	Open in IMG/M
3300009156\|Ga0111538_10449467	All Organisms → cellular organisms → Bacteria	1633	Open in IMG/M
3300009156\|Ga0111538_11026322	Not Available	1043	Open in IMG/M
3300009156\|Ga0111538_11182143	Not Available	967	Open in IMG/M
3300009156\|Ga0111538_12248979	Not Available	685	Open in IMG/M
3300009166\|Ga0105100_10316986	All Organisms → cellular organisms → Bacteria → Proteobacteria	937	Open in IMG/M
3300009553\|Ga0105249_11101537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	864	Open in IMG/M
3300009553\|Ga0105249_12931759	Not Available	548	Open in IMG/M
3300009817\|Ga0105062_1007238	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300010375\|Ga0105239_12240124	Not Available	635	Open in IMG/M
3300010403\|Ga0134123_10554870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1094	Open in IMG/M
3300011119\|Ga0105246_11822623	Not Available	582	Open in IMG/M
3300012473\|Ga0157340_1007401	Not Available	711	Open in IMG/M
3300012478\|Ga0157328_1011228	Not Available	632	Open in IMG/M
3300012488\|Ga0157343_1028248	Not Available	551	Open in IMG/M
3300012492\|Ga0157335_1032865	Not Available	552	Open in IMG/M
3300012496\|Ga0157353_1001906	Not Available	1250	Open in IMG/M
3300012502\|Ga0157347_1037562	Not Available	629	Open in IMG/M
3300012513\|Ga0157326_1038033	Not Available	665	Open in IMG/M
3300012513\|Ga0157326_1056294	Not Available	590	Open in IMG/M
3300012895\|Ga0157309_10111011	Not Available	771	Open in IMG/M
3300012957\|Ga0164303_10012841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2988	Open in IMG/M
3300012957\|Ga0164303_11363595	Not Available	528	Open in IMG/M
3300012961\|Ga0164302_10649218	Not Available	773	Open in IMG/M
3300012976\|Ga0134076_10344800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	654	Open in IMG/M
3300012985\|Ga0164308_10042880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2866	Open in IMG/M
3300012986\|Ga0164304_10099009	Not Available	1733	Open in IMG/M
3300012987\|Ga0164307_10330115	Not Available	1099	Open in IMG/M
3300012988\|Ga0164306_10924520	Not Available	713	Open in IMG/M
3300013297\|Ga0157378_11922724	Not Available	641	Open in IMG/M
3300013306\|Ga0163162_10650502	Not Available	1178	Open in IMG/M
3300014326\|Ga0157380_12368705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	596	Open in IMG/M
3300015371\|Ga0132258_12399720	Not Available	1321	Open in IMG/M
3300015371\|Ga0132258_12662464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1248	Open in IMG/M
3300015371\|Ga0132258_12999877	Not Available	1170	Open in IMG/M
3300015371\|Ga0132258_13936976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	1009	Open in IMG/M
3300015372\|Ga0132256_100105769	All Organisms → cellular organisms → Bacteria → Proteobacteria	2750	Open in IMG/M
3300015372\|Ga0132256_100109431	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	2706	Open in IMG/M
3300015372\|Ga0132256_100261271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1804	Open in IMG/M
3300015372\|Ga0132256_100266834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1786	Open in IMG/M
3300015372\|Ga0132256_101478473	Not Available	790	Open in IMG/M
3300015373\|Ga0132257_101680762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	813	Open in IMG/M
3300015374\|Ga0132255_101569705	Not Available	997	Open in IMG/M
3300015374\|Ga0132255_103790647	Not Available	642	Open in IMG/M
3300016357\|Ga0182032_11908007	Not Available	520	Open in IMG/M
3300017792\|Ga0163161_10759690	Not Available	812	Open in IMG/M
3300018056\|Ga0184623_10453591	Not Available	554	Open in IMG/M
3300018476\|Ga0190274_13749823	Not Available	514	Open in IMG/M
3300021478\|Ga0210402_10808136	Not Available	863	Open in IMG/M
3300025313\|Ga0209431_10214797	Not Available	1518	Open in IMG/M
3300025905\|Ga0207685_10237483	Not Available	875	Open in IMG/M
3300025942\|Ga0207689_11018364	Not Available	698	Open in IMG/M
3300025961\|Ga0207712_11398542	Not Available	626	Open in IMG/M
3300025972\|Ga0207668_10913059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	782	Open in IMG/M
3300026075\|Ga0207708_10051075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3148	Open in IMG/M
3300027695\|Ga0209966_1139953	Not Available	561	Open in IMG/M
3300027717\|Ga0209998_10149511	Not Available	599	Open in IMG/M
3300027907\|Ga0207428_10664961	Not Available	747	Open in IMG/M
3300028380\|Ga0268265_10358712	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300028819\|Ga0307296_10729443	Not Available	541	Open in IMG/M
3300028828\|Ga0307312_11118707	Not Available	521	Open in IMG/M
3300031226\|Ga0307497_10528274	Not Available	586	Open in IMG/M
3300031562\|Ga0310886_11047987	Not Available	524	Open in IMG/M
3300031854\|Ga0310904_10565338	Not Available	772	Open in IMG/M
3300031890\|Ga0306925_11067633	Not Available	818	Open in IMG/M
3300032000\|Ga0310903_10844156	Not Available	503	Open in IMG/M
3300032075\|Ga0310890_11042048	Not Available	660	Open in IMG/M
3300032122\|Ga0310895_10571178	Not Available	577	Open in IMG/M
3300033416\|Ga0316622_103129915	Not Available	525	Open in IMG/M
3300033551\|Ga0247830_10416882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1047	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.94%
Host-Associated	Host-Associated	49.06%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	49.06%
Terrestrial	Environmental → Terrestrial	44.34%
Aquatic	Environmental → Aquatic	6.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.64%
Freshwater	Environmental → Aquatic → Freshwater	3.77%
Sediment	Environmental → Aquatic → Sediment	2.83%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.09%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.55%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.43%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.94%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0937.00007880	2162886013	Switchgrass Rhizosphere	PWLAMDEYTEDADASVTLKEFRALAREAANEKARELEWVRSCDELHEAVRRAGVA
FD2_06038930	2189573001	Grass Soil	NNRKQDAPWLAMDEYSEDPEASITFKEFRSLAWEAANEKARHLGWVKSCDELHEAVKRAGGAP
ARcpr5oldR_0265421	3300000041	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCDELHEAVKRAGGAP*
ICChiseqgaiiFebDRAFT_135727921	3300000363	Soil	APISMKEFRTLAWEAANEKARHLGWVKSCDELHEAVKRAGGAP*
INPhiseqgaiiFebDRAFT_1005275081	3300000364	Soil	KQDAPWLAVDEYAEDSEAPITFSEFRALAWEAANEKARHLGWVQSCGELHEAVKCSARGPCIGDGAP*
JGI10214J12806_103449294	3300000891	Soil	DSEASITFKEFRTLAWEAANEMGRELGWVRSCDELHEAVRRAGAALVDI*
JGI10214J12806_121904931	3300000891	Soil	DSEASITFKEFRTLAWQAANERARDLGWVRSCDELHEAVKRAGSAA*
JGI1027J12803_1042017451	3300000955	Soil	VDEYAEDSEAPITFSEFRALAWEAANEKARHLGWVQSCGELHEAVKCSARGPCIGDGAP*
Ga0062593_1014289141	3300004114	Soil	MDEYEEDSEASITFKEFRTLAWEAANEMGRELGWLRSCDELHEAVRRAGAALVDI*
Ga0062590_1010186581	3300004157	Soil	GTCFRAKYRKQDAPWLAVDGYAEDSEAPITFNEFRALAWEAANEKARNLGWVKSCGELHEEVKRAAHGRV*
Ga0063356_1006917112	3300004463	Arabidopsis Thaliana Rhizosphere	MDEYEEDSEAPITLKEFRSLAWEAANARAYELGWIRSCDELHEAVKRAASAA*
Ga0063356_1051273571	3300004463	Arabidopsis Thaliana Rhizosphere	LAMDGYAEDSEAPMTFQEFRTLAWQAANEKARDLGWVKSYDELHEAVKRAGAP*
Ga0062595_1010392721	3300004479	Soil	EYEEDSEASITFKEFRTLAWEAANEMGRELGWVRSCDELHEAVRRAGAALVDI*
Ga0062595_1019452412	3300004479	Soil	APWLAMDEYTEDADASVTLKEFRALAWEAANEKARELEWVRSCDELHEAVRRPGAA*
Ga0069718_149742331	3300004481	Sediment	LAIDEWVEDSDAPISSREFRALAWEAANEKARDLGWVKSCDELHEAVKRVSAVP*
Ga0062594_1032889302	3300005093	Soil	EEDSEASITFKEFRTLAWQAANERARDLGWVRSCDELHEAVKRAGSAA*
Ga0066388_1048274141	3300005332	Tropical Forest Soil	EDDQDAHITLKEFRAIAWEAANERARELGWVSNYDELHERARQAAAK*
Ga0066388_1052572392	3300005332	Tropical Forest Soil	MDECKEDSEALIRFKEFRRLAWEAANERARELGWVRSCDELHEAVRRAGAA*
Ga0070668_1014352471	3300005347	Switchgrass Rhizosphere	GTCFRAKYRKQDAPWLAVDGYAEDSEAPITFNEYRALAWEAANEKARNLGWVKSCGELHEEVKRAAHGRV*
Ga0070700_1009734702	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRGTCFRAKYRKQDAPWLALDEYAGDAEAAITFNEFRTLAWEAANEKARSLGWVKSCAELHEEVKRAAYGRD*
Ga0070681_111370691	3300005458	Corn Rhizosphere	QDAPWLAMAESAEDSEAPITFSEFRALAWEAANEKARHLGWVQSCGELHEAVKSAAGGPRIGDGAP*
Ga0068853_1006904043	3300005539	Corn Rhizosphere	LAPWLALDECVEGSEASITFREFRTLAWEAASEKARDLGWVKSCDKLHEAVKRAGGAP*
Ga0070665_1013019311	3300005548	Switchgrass Rhizosphere	WLALDEYAGDAEAAITFNEFRTLAWEAANEKARSLGWVKSCAELHEEVKRAAYGRD*
Ga0070702_1001067361	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MDEWAEDSEAPITFREFRTIAWEAANEKARDLGWVKSSDELHEAVKRAGGAP*
Ga0066905_1012730553	3300005713	Tropical Forest Soil	MDECKEDSEALIRFKEFRTLAWEAANERARELGWVRSCNELHEAVRRAGAA*
Ga0068858_1012360952	3300005842	Switchgrass Rhizosphere	GDAEAAITFNEFRTLAWEAANEKARSLGWVKSCAELHEEVKRAAYGRD*
Ga0075019_109052462	3300006086	Watersheds	PWLAMDEYAEDPEASITFKEFRSLAWEAANEKARYLGWVKSCDELHEAVKRAGGAP*
Ga0075015_1009965291	3300006102	Watersheds	RGTCFRAKYRKQDAPWLVMDEYAEDPEAPITFKEFRTLAWEAANEKARHLGWVKSCDELHEAVKRAGGAP*
Ga0075434_1004340012	3300006871	Populus Rhizosphere	MDAYEEDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVKRASTA*
Ga0105095_100754214	3300009053	Freshwater Sediment	APWLAMDEWIEDSEAPITLREFRTLAWEAANEKARDLGWVKSCDELHEAVKRAGGA*
Ga0111539_123981901	3300009094	Populus Rhizosphere	YKDDAEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA*
Ga0111539_128243611	3300009094	Populus Rhizosphere	WLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARNLGWVRSCDELHEAVKRAGGAP*
Ga0105091_102557511	3300009146	Freshwater Sediment	MDEYEEDTGALITLQEFRDLAWEAANAKARDLGWVRSCDELDEAVKRSVSAA*
Ga0114129_115691201	3300009147	Populus Rhizosphere	KQGAPWLALDGYEEDSEASITFKEFRTLAWEAANEMGRELGWVRSCDELHEAVRRAGAALVDI*
Ga0105243_107484592	3300009148	Miscanthus Rhizosphere	MDEWIEDSEAPITLREFRTLAWEAANEKARDLGWVKSCDELHEAVKRAGGAP*
Ga0105243_129942861	3300009148	Miscanthus Rhizosphere	EDSEASITFKEFRTLAWQAANERARDLGWVRSCDELHEAVKRAGSAA*
Ga0111538_103210321	3300009156	Populus Rhizosphere	MDEYVEDSEAPMTFQEFRTLAWEAANEKARDLGWVKSYDELHEAVKRAASAA*
Ga0111538_104494672	3300009156	Populus Rhizosphere	MDEYTEDADASVTLKEFRALAWEAANEKARELEWVRSCDELHEAV
Ga0111538_110263223	3300009156	Populus Rhizosphere	MDEYTEDSEAPMTFKEFRTLAWEAANEKARDLGWVKSYDELHEAVKRAGAP*
Ga0111538_111821431	3300009156	Populus Rhizosphere	MDAYEEDPEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVKRASTA*
Ga0111538_122489791	3300009156	Populus Rhizosphere	GTWLAMDEWIEDSEAPITLREFRTLAWEAANEKARDLGWVTSCEDLHEAVKRAGGAP*
Ga0105100_103169861	3300009166	Freshwater Sediment	MDEWIEDSEAPITLREFRTLAWEAANEKARDLGWVKSCEDLHEAVKRAGG
Ga0105249_111015372	3300009553	Switchgrass Rhizosphere	GTCFRAKYRKQDAPWLAVDEYAEDSEAPITFNEFRALAWEAANEKARNLGWVKSCGELHEEVKRAAHGRV*
Ga0105249_129317591	3300009553	Switchgrass Rhizosphere	EAPWLAMDEYEEDTGALITLQEFRALAWEAANAKARDLGWVRSCDELHEAVKRSGSAA*
Ga0105062_10072381	3300009817	Groundwater Sand	MDEYAEDSEAPMTFKEFRTLAWEAANEKARDLGWVKSCDELHEAVKRAGGAP*
Ga0105239_122401241	3300010375	Corn Rhizosphere	SLRAKFRKQEAPWLAMDEYEEDTGALITFQEFRALAWEAANAKARDLGWVKSCDELHEAVKRSGSAA*
Ga0134123_105548702	3300010403	Terrestrial Soil	MDEYAEDSEAPMTFKEFRTLAWEAANEKARDLGWVKSYDELHEAVKRAGAP*
Ga0105246_118226231	3300011119	Miscanthus Rhizosphere	MDEYKDDSEASITFKEFRTLAWEAANERARELGWVKSCDELHEAVKRAGAA*
Ga0157340_10074011	3300012473	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCAELHEAKRAGAP*
Ga0157328_10112282	3300012478	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSKAPMTFQEFRSLAWEVANEKARDLGWVRSCGELHEAVKRASAP*
Ga0157343_10282482	3300012488	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWLNEKARDLGWVRSCDELHEAVKRAGAP*
Ga0157335_10328652	3300012492	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCDELHEAVKRAGAP*
Ga0157353_10019061	3300012496	Unplanted Soil	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWQAANEKARDLGWVRSCDELHEAVKRASAP*
Ga0157347_10375621	3300012502	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCDELHEAVKRAGG
Ga0157326_10380331	3300012513	Arabidopsis Rhizosphere	RKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCNELHEAVKRAGAP
Ga0157326_10562941	3300012513	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARNLGWVRSCDELHEAVKRAGGAP*
Ga0157309_101110111	3300012895	Soil	SDAPINSREFRALAWEAANEKARDLGWVKSCDELHEAVKRVSAVP*
Ga0164303_100128414	3300012957	Soil	MDEYKDDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA*
Ga0164303_113635951	3300012957	Soil	EYAEDSEAPMTFQEFRTLAWQAANEKARDLGWVKSYDELHEAVKRAALPNL*
Ga0164302_106492181	3300012961	Soil	MDEYAEDPEASINSKEFLSLAWEATNEKARHLGWVKSCDELHEAVKRAGGAP*
Ga0134076_103448002	3300012976	Grasslands Soil	EDSEAPITFKEFRTLAWEAANEKARDFGWVKSCDELHEAAKRAGGAP*
Ga0164308_100428801	3300012985	Soil	GYAEDSEAPMTFQEFRTLAWQAANEKARDLGWVRSYDELHEAVKRAVP*
Ga0164304_100990093	3300012986	Soil	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWQAANEKARDLGWVRSYDELHEAVKRAGP*
Ga0164307_103301151	3300012987	Soil	MAKYRKQEAPWLAMDEYAEDSEAPMTFQEFRTLAWEAANEKARDLGWVRSYDELHEAVKRAGAP*
Ga0164306_109245201	3300012988	Soil	LAMDGYAEDSEAPMTFQEFRTLAWEAANEKARDLGWVRSYDELHEAVKRAGAP*
Ga0157378_119227241	3300013297	Miscanthus Rhizosphere	MAKYRKQEAPWLAMDEYAEDSEAPMTFQEFRTLAWQAANEKARDLGWVRSCDELHETVKR
Ga0163162_106505022	3300013306	Switchgrass Rhizosphere	MDEYEEDSEAPITFKEFRTLAWEAANERARDLGWVKSCDELHEAVKRAGAA*
Ga0157380_123687051	3300014326	Switchgrass Rhizosphere	KQDAPWLAVDGYAEDSEAPITFNEFRALAWEAANEKARNLGWVKSCGELHEEVKRAAHGRV*
Ga0132258_123997203	3300015371	Arabidopsis Rhizosphere	MDGYEEDSEAPITLKEFRAVAWEAANEKARELGWIKSCDELHEAVKRAGSAA*
Ga0132258_126624641	3300015371	Arabidopsis Rhizosphere	MDEYKDDAEASITFKEFRTLAWEAANERARELGWVRSCDELHEAV
Ga0132258_129998772	3300015371	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCDELHEAVKRASAP*
Ga0132258_139369763	3300015371	Arabidopsis Rhizosphere	SVTLKEFRALAWEAANEKARELEWVRSCDELHEAVRRAGAA*
Ga0132256_1001057694	3300015372	Arabidopsis Rhizosphere	GTCLMAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCDELHEAVKRAGAP*
Ga0132256_1001094311	3300015372	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYADSEAPMTFQEFRTLAWHAANEKARDLGWVRSCDELHEAVKRAGAP*
Ga0132256_1002612711	3300015372	Arabidopsis Rhizosphere	TCLMAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRSLAWEVANEKARDLGWVRSCGELHEAVKRASAP*
Ga0132256_1002668341	3300015372	Arabidopsis Rhizosphere	MDEYKDDAEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA*
Ga0132256_1014784732	3300015372	Arabidopsis Rhizosphere	MDGYEEDSEAPITFKEFRTLAWEAANERACELGWIRSCEELLEAVKRAGSAA*
Ga0132257_1016807621	3300015373	Arabidopsis Rhizosphere	ALWLAMDGYAEDSEAPMTFQEFRSLAWEVANEKARDLGWVRSCGELHEAVKRASAP*
Ga0132255_1015697051	3300015374	Arabidopsis Rhizosphere	MAKYRKQEAPWLAMDGYAEDSEAPMTFQEFRTLAWHAANEKARDLGWVRSCNELHEAVKRAGAP*
Ga0132255_1037906471	3300015374	Arabidopsis Rhizosphere	RFRKQDAPWLAMDGYEEDSEAPITLKEFRAVAWEAANEKARELGWIKSCDELHEAVKRAGSAA*
Ga0182032_119080073	3300016357	Soil	MDGYQEDPEATITFKEFRTLAWQAANERARALGWVQSCNELHETVR
Ga0163161_107596901	3300017792	Switchgrass Rhizosphere	MDECKDDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA
Ga0184623_104535911	3300018056	Groundwater Sediment	ALPSRAKSAAWLVMDEYAEDPEASEFRSLAWEAANEKARHLGWVKSCDELHEAVKRAGGA
Ga0190274_137498231	3300018476	Soil	IDEWVEDSDAPINSREFRALAWEAANEKARDLGWVKSCDELHEAVKRVSAVP
Ga0210402_108081362	3300021478	Soil	DSEAPMTFQEFRTLAWEAANEKARDLGWVRSYNELHEAVKRAGAP
Ga0209431_102147972	3300025313	Soil	QDAPWLAIDEWAEDSEAPITFREFRSLAWEAANEKARDLGWVKSCEDLHEAVKRAGGAP
Ga0207685_102374832	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TMRGTCLRAKFRKQDAPWLAMDEYKDDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA
Ga0207689_110183643	3300025942	Miscanthus Rhizosphere	GTCLKAKYRKQEAPWLAMDEYAEDSEAPMTFKEFRTLAWEAANEKARDLGWVKSYEELHEAVKRAGQPKR
Ga0207712_113985421	3300025961	Switchgrass Rhizosphere	MDEYEEDSEASTTFKEFRTLAWEAANERARELGWVKSCD
Ga0207668_109130591	3300025972	Switchgrass Rhizosphere	LVAMRGTCFRAKYRKQDAPWLAVDGYAEDSEAPITFNEYRALAWEAANEKARNLGWVKSCGELHEEVKRAAHGRV
Ga0207708_100510754	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MDEYAEDSEAPMTFKEFRTLAWEAANEKARDLGWVKSYDELHEAVKRAGAP
Ga0209966_11399531	3300027695	Arabidopsis Thaliana Rhizosphere	MDEYEEDSEAPITLKEFRSLAWEAANARAYELGWIRSCDELHEAVKRAASAA
Ga0209998_101495112	3300027717	Arabidopsis Thaliana Rhizosphere	LRAKFRKQDAPWLAMDEYEEDSEAPITFKEFRTLAWQAANERARDLGWVRSCDELHEAVKRAGSAA
Ga0207428_106649612	3300027907	Populus Rhizosphere	RKQEAPWLAMDAYEEDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVKRASTA
Ga0268265_103587122	3300028380	Switchgrass Rhizosphere	MDEYAEDSEAPMTFQEFRTLAWEAANEKGRDLGWVRSYDELHEAVKSAAGGPRIGDGAP
Ga0307296_107294431	3300028819	Soil	AQDSEAPISFSEFRTLAWEAANEKARHLGWVKSCDELHEAVKWAGSAP
Ga0307312_111187071	3300028828	Soil	AMRGTCIKAKYRKQEAPWLAMDGYADDSEAPITFKEFRTLAWEAANEKARDLGWVKSCDELHEAVKRAGAP
Ga0307497_105282742	3300031226	Soil	DEYKDDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA
Ga0310886_110479871	3300031562	Soil	MRGTCFRARYRKQDAPWLAIDEWVEDSDAPINSREFRALAWEAANEKARDLGWVKSCDELHEAVKRVSAVP
Ga0310904_105653381	3300031854	Soil	MRGTSLGAKFRKQEAPWLAMDEYEEDPGAPITLQEFRALAWEAANVKARDLGWVRSCDELHEAVKRSGSAA
Ga0306925_110676331	3300031890	Soil	MDGYQEDPEATITFKEFRALAWQAANERARALGWVQSCNELHETVRRAGAF
Ga0310903_108441561	3300032000	Soil	APWLAVDGYAEDSEAPITFNEFRALAWEAANEKARNLGWVKSCGELHEEVKRAAHGRV
Ga0310890_110420482	3300032075	Soil	VEGSEASITFREFRTLAWEAASEKARDLGWVKSCDKLHEAVKRAGGAP
Ga0310895_105711781	3300032122	Soil	LAMDEYKDDSEASITFKEFRTLAWEAANERARELGWVRSCDELHEAVRRAGAA
Ga0316622_1031299152	3300033416	Soil	YRKQDAPWLAIDEWVEDSDAPINSREFRALAWEAANEKARDLGWVKSCDELHEAVKRVSAVP
Ga0247830_104168823	3300033551	Soil	LLDEYAEDSEAPITFSEFRALAWEAANEKARHLGWVQSCGELHEAVKCAARGPCIGDGAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093409

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences