Metagenome Family F093461

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093461
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	63 residues
Representative Sequence	MSAYGPKRTFVFAPHMSAFGGKADMTVCVSPLSRSLLGVKRTCLFALHMSAFDPKRT
Number of Associated Samples	66
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	66.98 %
% of genes from short scaffolds (< 2000 bps)	78.30 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.642 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (22.642 % of family members)
Environment Ontology (ENVO)	Unclassified (34.906 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.170 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.53% β-sheet: 0.00% Coil/Unstructured: 56.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04392	ABC_sub_bind	53.77
PF13924	Lipocalin_5	3.77
PF00211	Guanylate_cyc	2.83
PF13432	TPR_16	1.89
PF00083	Sugar_tr	1.89
PF03401	TctC	0.94
PF02627	CMD	0.94
PF07568	HisKA_2	0.94
PF12071	DUF3551	0.94
PF00293	NUDIX	0.94
PF00571	CBS	0.94
PF00440	TetR_N	0.94
PF03480	DctP	0.94
PF03060	NMO	0.94
PF12852	Cupin_6	0.94
PF05988	DUF899	0.94
PF13460	NAD_binding_10	0.94
PF01872	RibD_C	0.94
PF02518	HATPase_c	0.94
PF07883	Cupin_2	0.94
PF12697	Abhydrolase_6	0.94
PF14247	DUF4344	0.94
PF13492	GAF_3	0.94
PF01464	SLT	0.94
PF12806	Acyl-CoA_dh_C	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	53.77
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.83
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.94
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.94
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.94
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.94
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.94
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.64 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.64 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.64 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.77 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.74 %
Unclassified	root	N/A	27.36 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.53 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.83 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Bradyrhizobium guangxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	0.94 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.89 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.94 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.94 %
Bradyrhizobium guangxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	0.94 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8790695	Not Available	1104	Open in IMG/M
3300000559\|F14TC_100134778	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300000955\|JGI1027J12803_103017520	Not Available	894	Open in IMG/M
3300003911\|JGI25405J52794_10005513	Not Available	2284	Open in IMG/M
3300005093\|Ga0062594_102063434	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300005295\|Ga0065707_10430786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300005332\|Ga0066388_100033547	All Organisms → cellular organisms → Bacteria → Proteobacteria	4896	Open in IMG/M
3300005332\|Ga0066388_100270785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2340	Open in IMG/M
3300005332\|Ga0066388_100782647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1549	Open in IMG/M
3300005332\|Ga0066388_101086375	Not Available	1353	Open in IMG/M
3300005332\|Ga0066388_102090868	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005435\|Ga0070714_102494530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300005444\|Ga0070694_100285896	Not Available	1259	Open in IMG/M
3300005713\|Ga0066905_100574187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300005713\|Ga0066905_100692169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	874	Open in IMG/M
3300005713\|Ga0066905_101024022	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300005713\|Ga0066905_101035300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300005764\|Ga0066903_101212504	All Organisms → cellular organisms → Bacteria → Proteobacteria	1402	Open in IMG/M
3300005764\|Ga0066903_101455184	Not Available	1290	Open in IMG/M
3300005764\|Ga0066903_102218055	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300005764\|Ga0066903_102467592	All Organisms → cellular organisms → Bacteria → Proteobacteria	1006	Open in IMG/M
3300005764\|Ga0066903_103259500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	877	Open in IMG/M
3300005764\|Ga0066903_104111189	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
3300005764\|Ga0066903_106594341	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005764\|Ga0066903_107005876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	585	Open in IMG/M
3300005937\|Ga0081455_10016332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7172	Open in IMG/M
3300005937\|Ga0081455_10044447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3874	Open in IMG/M
3300005937\|Ga0081455_10246117	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300006049\|Ga0075417_10061957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1639	Open in IMG/M
3300006049\|Ga0075417_10123062	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300006049\|Ga0075417_10259493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	835	Open in IMG/M
3300006844\|Ga0075428_100697581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1081	Open in IMG/M
3300006844\|Ga0075428_101921638	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300006845\|Ga0075421_100642375	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300006845\|Ga0075421_100793913	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300006845\|Ga0075421_101442522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300006847\|Ga0075431_100024013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6243	Open in IMG/M
3300006853\|Ga0075420_100784622	Not Available	820	Open in IMG/M
3300006854\|Ga0075425_100285225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1900	Open in IMG/M
3300006871\|Ga0075434_100049595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4169	Open in IMG/M
3300006871\|Ga0075434_100433577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1335	Open in IMG/M
3300006904\|Ga0075424_100137285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2588	Open in IMG/M
3300006914\|Ga0075436_100598924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	812	Open in IMG/M
3300006969\|Ga0075419_11421773	Not Available	518	Open in IMG/M
3300009162\|Ga0075423_10392933	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300009162\|Ga0075423_10408811	Not Available	1425	Open in IMG/M
3300009162\|Ga0075423_10421739	All Organisms → cellular organisms → Bacteria → Proteobacteria	1401	Open in IMG/M
3300009792\|Ga0126374_10837598	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300010043\|Ga0126380_10367378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1055	Open in IMG/M
3300010043\|Ga0126380_10845030	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300010043\|Ga0126380_11760328	Not Available	559	Open in IMG/M
3300010358\|Ga0126370_10100781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1997	Open in IMG/M
3300010359\|Ga0126376_12968567	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300010361\|Ga0126378_10899261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	992	Open in IMG/M
3300010361\|Ga0126378_12327190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	612	Open in IMG/M
3300010362\|Ga0126377_10960106	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300010362\|Ga0126377_11864493	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300010366\|Ga0126379_10365130	Not Available	1479	Open in IMG/M
3300010366\|Ga0126379_10873718	All Organisms → cellular organisms → Bacteria → Proteobacteria	1001	Open in IMG/M
3300010366\|Ga0126379_11945701	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300010366\|Ga0126379_12667756	Not Available	597	Open in IMG/M
3300010366\|Ga0126379_12740033	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300010375\|Ga0105239_11446990	Not Available	794	Open in IMG/M
3300010376\|Ga0126381_100895040	Not Available	1277	Open in IMG/M
3300012499\|Ga0157350_1002499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	1132	Open in IMG/M
3300012948\|Ga0126375_10060292	All Organisms → cellular organisms → Bacteria → Proteobacteria	2074	Open in IMG/M
3300012984\|Ga0164309_11003404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	688	Open in IMG/M
3300012987\|Ga0164307_10164199	All Organisms → cellular organisms → Bacteria → Proteobacteria	1477	Open in IMG/M
3300012987\|Ga0164307_11574553	Not Available	556	Open in IMG/M
3300016270\|Ga0182036_10152104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1649	Open in IMG/M
3300016387\|Ga0182040_10104892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1927	Open in IMG/M
3300017939\|Ga0187775_10008028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2621	Open in IMG/M
3300025916\|Ga0207663_10173194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1535	Open in IMG/M
3300025930\|Ga0207701_10192329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1796	Open in IMG/M
3300026067\|Ga0207678_10060461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3259	Open in IMG/M
3300026142\|Ga0207698_11476604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300027873\|Ga0209814_10059630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1597	Open in IMG/M
3300027907\|Ga0207428_10688986	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300027909\|Ga0209382_10093310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3534	Open in IMG/M
3300027909\|Ga0209382_10338677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1688	Open in IMG/M
3300027909\|Ga0209382_11720851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	614	Open in IMG/M
3300031546\|Ga0318538_10087246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1593	Open in IMG/M
3300031573\|Ga0310915_11009119	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031794\|Ga0318503_10176608	Not Available	691	Open in IMG/M
3300031847\|Ga0310907_10288473	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031892\|Ga0310893_10011197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2448	Open in IMG/M
3300031892\|Ga0310893_10344736	Not Available	641	Open in IMG/M
3300031941\|Ga0310912_11045284	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300031943\|Ga0310885_10059433	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300031954\|Ga0306926_11453037	Not Available	793	Open in IMG/M
3300032017\|Ga0310899_10109944	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300032180\|Ga0307471_102116934	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300032261\|Ga0306920_102499020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300032828\|Ga0335080_12153999	Not Available	537	Open in IMG/M
3300034090\|Ga0326723_0210193	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300034820\|Ga0373959_0126144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.04%
Host-Associated	Host-Associated	33.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.04%
Plants	Host-Associated → Plants	33.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.72%
Peat	Environmental → Terrestrial → Peat	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.42%
Loam	Environmental → Terrestrial → Soil → Loam	22.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.49%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	22.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02111780	2088090015	Soil	MVDAVHESAIXXXRTCTAAPRMSAFGGKADIAFRGISLSRSLLGVKRTCLIAAQMSAFDPKRT
F14TC_1001347782	3300000559	Soil	MSAIGPKRTSLVGPHMSALGGKADMTVCGNPLXXXXXXVKRTSLFATHVSAFDPKR
JGI1027J12803_1030175202	3300000955	Soil	MSAFGPKQTWGTAAHMSAFGGKADMTVCRNPLSRSLLGVKRTRPFALHMSAFDPKQ
JGI25405J52794_100055132	3300003911	Tabebuia Heterophylla Rhizosphere	TCENLSVHFEPMSAYGPKQTSLVALHMSAFGGKADMTVCANPLSRSLLGVKRTWVDALHMSAFDPNRT*
Ga0062594_1020634341	3300005093	Soil	MDLTVVMSAFGPKQTWANAPHMSASGGKADVACCGNPLSRSLLGVKRTCRFAPHMSAFDP
Ga0065707_104307862	3300005295	Switchgrass Rhizosphere	MSAIGPKQTWACAPHMSAFGGKADMGYCGSPLSRSLLGVKRTWVGALHMSAFD
Ga0066388_1000335475	3300005332	Tropical Forest Soil	MSAIGPRRTSLVALHMSACAGKADMTVCGSPLSRSLLGVKRTCRFALHESAYDPKRTLVVLASVLV*
Ga0066388_1002166952	3300005332	Tropical Forest Soil	MSGGMSAIGPKRTWTTALHMPAFRGKADMTVCGCLLSRSLSGVKRTSRFALHMSAYDPKRTCAVHKLMSALGQKRT*
Ga0066388_1002707854	3300005332	Tropical Forest Soil	VFMSAFGPKQTWRIALHMSAIGGKADMTVCGNPLSRSLIGVKRTCGFALHMSAFDPKRT*
Ga0066388_1007826472	3300005332	Tropical Forest Soil	MSAFGSQRPFLFAPHMSAFGGKADMAFCGISLSRSLLGVKRTWAGAVQMSAFDPKRTLASLTATLPVC*
Ga0066388_1010863751	3300005332	Tropical Forest Soil	MSAIGPKQTCVAALHESAFGGKADMTSCGSPLSRSLLGVKRTRGFALHMSAFDPKRTW
Ga0066388_1020908682	3300005332	Tropical Forest Soil	MSAIGPKRTSIVALHMSAFGGKADMGFCGISLSRSLLGVKHTSPVAAHMSAYDPKRTFTTFALVAYFDTMH
Ga0070691_106872372	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTGGMSAIGPWPTFRFALHLSAFGGKADMTVRRSPLSRALLGVERTWLVAAQMSASDPTRT*
Ga0070675_1013280452	3300005354	Miscanthus Rhizosphere	AVGTARSRDRGDRMTGGMSAIGPWPTFRFALHLSAFGGKADMTVRRSPLSLLGVKRTCRFALHMSAFDPKRTCPSDVLG*
Ga0070714_1024945302	3300005435	Agricultural Soil	MSAIGPKQTWACAPHMSAFGGKADMGYCGSPLSRSLLGVKRTWVGALHMSAFDPKRT
Ga0070694_1002858961	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTGGMSAIGPWPTFRFALHLSAFGGKADMTVRRSPLSLLGVKRTCRFALHMSAFDPKRTS
Ga0066905_1005741872	3300005713	Tropical Forest Soil	MNGPFDLRHMSAIGPKRTWPIALHMSAFGGKADMALCGNSLSRSLLGVKRTWLFALHMSAYDPKRT
Ga0066905_1005893372	3300005713	Tropical Forest Soil	MPFAALHESASGPKRTSLVAPHMSAFGGKADMTIGTCPLSWSLSGVKQTWVAAPHMSAFDPK
Ga0066905_1006921691	3300005713	Tropical Forest Soil	MSAIGPKRTWSTALHMSAFGGKADMTFGANVLSRSLLGVKRTCRFALHMSAFDPKRTS
Ga0066905_1010240221	3300005713	Tropical Forest Soil	MGAALPDFFAAMHESAIGPKRTSLVATHMSAFGGKADMTGCRSPLSRSLSGVKRTWPIALHMSAFDPKRT
Ga0066905_1010353002	3300005713	Tropical Forest Soil	MSAFGPKQTWTTALHMSAFGGKADMAFCGISLSRSLLGVKRTWAVAPHMSAFDPKRTL
Ga0066903_1012125043	3300005764	Tropical Forest Soil	MSAFGPKPTRVAALHESAFGGKADMTFRGSPLSRSLLGVKRTWPFALHMSAFD
Ga0066903_1014551841	3300005764	Tropical Forest Soil	MSAFGPKQTWARALHMSALRGKADMTVCVRLLSRSLLGVKRTWLIAPHMSAFDPKRT
Ga0066903_1022180552	3300005764	Tropical Forest Soil	MSAFGPKQTLLFAPHMSAFGGKADMTFARISLSRSLLGVKRTWVGALHMSAFDPKRTSLAA*
Ga0066903_1024675922	3300005764	Tropical Forest Soil	MSAIGPKQTLLFALHMSAFRGKADMTGCRSPLLRSLLGVKRTWSVALHMSAFDPKRTSPSDLENASVLLF*
Ga0066903_1032595002	3300005764	Tropical Forest Soil	MSAIGPKRTSLVALHMSAFGGKADMTLCGNPLLRSLLGVKRTWAVAPHMSAYDPK
Ga0066903_1041111892	3300005764	Tropical Forest Soil	MMILFAALHESAFGPKQTWAGASHMSAFGGKADMTVCGCLLSRSLLGVKRTYPFALHMSAFDPKRT*
Ga0066903_1065943411	3300005764	Tropical Forest Soil	MSAFGPEQTSPVAPHMSAFGVKRTMDFCGISHSRSLLGVKRTLRFAAHMSAFDPKADMA
Ga0066903_1070058761	3300005764	Tropical Forest Soil	MSAYGPKRTFVFAPHMSAFGGKADMTVCVSPLSRSLLGVKRTCLFALHMSAFDPKRT
Ga0081455_1001633213	3300005937	Tabebuia Heterophylla Rhizosphere	MSAFGPKQTSASALHMSALEGKADMTVCESPLSRSLLGVKRTSDSALQMSAYDPKRTISRHFMLR*
Ga0081455_100444475	3300005937	Tabebuia Heterophylla Rhizosphere	MRAMSAFGPKQTFVFAPHMSVFGGKADMTFAGIPLSWSLFGVKRTSLFALQMSALDPKRTLVALNGNFIR*
Ga0081455_102461171	3300005937	Tabebuia Heterophylla Rhizosphere	MNIGMSAFGPKQTSTGAPHMSAFGAKADMAFCGISLSRSLLGVKRTWLVSTHMSAFDPKRTCSAVDVQFLVP
Ga0075417_100619572	3300006049	Populus Rhizosphere	MKGAMSAFGPKRTSVAAPHMSAFGGKADMTVCGNPLLRSLLGAKRTCLFALHMSANDPKRTF*
Ga0075417_101230621	3300006049	Populus Rhizosphere	MDFAAMHESAIGPKRTSVAASHMSALGGKADMACCGNSLSRSLLGVKRTWAVAPHMSAFDPKRT
Ga0075417_102594932	3300006049	Populus Rhizosphere	MSAFGPKQTWASALHMSAFGGKADMALCGNSLLRSLLGVKRTWVGALHMSAFDPKRTLAVHCGSGFDAD*
Ga0075428_1006975812	3300006844	Populus Rhizosphere	MSASAPKQTCRVAPHMSAFGGKADMTVCGNPLLRSLLGAKRTCLIALHMSAND
Ga0075428_1019216382	3300006844	Populus Rhizosphere	LNFEMSAIGPKQTLLIAPQMSAFVAKADMAFWGISLSRSLLGVKRTWLVAARMSAFDPKRT*
Ga0075421_1006423752	3300006845	Populus Rhizosphere	MDFAAMHESAIGPKRTSVAASHMSALGGKADMACCGNSLSRSLLGVKRTWAVAPHMSAF
Ga0075421_1007939131	3300006845	Populus Rhizosphere	NPGAASFGGPISLNFEMSAIGPKQTLLIAPQMSAFVAKADMAFWGISLSRSLLGVKRTWLVAARMSAFDPKRT*
Ga0075421_1014425221	3300006845	Populus Rhizosphere	MSAFGPKQTSLVAPHMSAFGGKADMTLRGNPLSRSLLGVKRTWLAAAHMSAFNPKSTSAVAEVVEEPLNF
Ga0075431_1000240131	3300006847	Populus Rhizosphere	MAHSAIALHMSAFGPKRTSIAAPHMSAFGCKADMLSRGATLSRSLLGVKRTWLAAAHMSAFNPKSTSAVAEVVEEPLNF
Ga0075420_1007846221	3300006853	Populus Rhizosphere	MSAFGPKQTSANAPHMSAFGAKADMAFRGNSLLRSLLGGRTCPFALHMSASDPKRTWGLYLLL
Ga0075425_1002852255	3300006854	Populus Rhizosphere	MSAIGPKRTCVAALHESAIGGKADMTIGTCPLSWSLLGAKRTCLVALHMSACDPKQTYLIGYI*
Ga0075434_1000495958	3300006871	Populus Rhizosphere	MSAIGPKQTSPFALHMSAIGVEADMTVFGNPLSRSLLGAKRTWPIAAHMSAFDPKRTSPP
Ga0075434_1004335773	3300006871	Populus Rhizosphere	MIDAMSAIGPKRTSVAAPHMSAFGSKADMTLCENPLSRSLLGVKRTSLVAAHMSAFDPKR
Ga0075424_1001372854	3300006904	Populus Rhizosphere	MSAYGPKQTSASAVHMSAFGGKADMTVCGNPLLRSLLGAKRTCLIALHMSAYDPKQTLGLIAV*
Ga0075436_1005989242	3300006914	Populus Rhizosphere	MSAFGPKQTCASAPHMCAFGGKADIGLCGNSLLGAKQTWLIALHMSANDPKRTLV
Ga0075419_114217731	3300006969	Populus Rhizosphere	IRDAMSAIGPKQTWPGAPHMSAFGGKADMAFCGISLSRSLLGVKRTWLVAAQMSAFDPKRT*
Ga0075423_103929331	3300009162	Populus Rhizosphere	MHESAFGPKRTSLVAPHMSAFGGKADMTIWACLLLRSLLGVKRTWVGALHMSAFDPKRTLMLQNHLSECSL
Ga0075423_104088111	3300009162	Populus Rhizosphere	MRAMSASGPKQTWAVALHMSAFGGKADMAFCGGPLLRSLLGVKRTWLVAPHMSAFDPKRTYYRGAKV
Ga0075423_104217392	3300009162	Populus Rhizosphere	MSAYGPKRTSLVAPHMSAFGGKADMTLCENPLSRSLLGVKRTCPFALHMSANDPKRTFAAAFLTYRDV*
Ga0105241_106123741	3300009174	Corn Rhizosphere	MSAIGPKRTSLVAPHMSAFGGKADMTIGTCPLSWSLSGVKQTSLVAAHMSAFDPKRT
Ga0105241_126269471	3300009174	Corn Rhizosphere	MSAFGPKRTSLVAPHMSAFGGKADMTIGACPLSWSLSGVKQTSLVAAHMSAFDPKRT
Ga0126374_108375982	3300009792	Tropical Forest Soil	MSAIGPKQTWARALHMSAFEGKADMTVCGGSLSQSVLGVKRTSSVALQMSAFD
Ga0126380_103673783	3300010043	Tropical Forest Soil	MSAIGPRRTSLVALHMSACAGKADMTVCGSPLSRSLLGVKRTCRFALHESAYDP
Ga0126380_108450301	3300010043	Tropical Forest Soil	MSAIGPKRTCVAALHESAFGGKADMAFCGISLSRSLLGVKQTWHFALHMSAFDPKRT
Ga0126380_117603281	3300010043	Tropical Forest Soil	MLLAAVHKSAIGPKRTSLVALHMSAFGGKADMTLGRCLLLRSLLGVKRTWLVAAHMLPFDPKRTLVPPSRT
Ga0126370_101007813	3300010358	Tropical Forest Soil	VGMSAIGPRRTSLVALHMSACAGKADMTVCGSPLSRSLLGVKRTCRFALHESAYDPKRTLVVLASVLV*
Ga0126376_129685671	3300010359	Tropical Forest Soil	MSAFGPKRTSLVAPHTSAFGGKADITSGCPLSRSLLGVKRTWAGAVQMSAFDPKRT
Ga0126378_108992612	3300010361	Tropical Forest Soil	MNGMSAFGPKRTWAIALHMSAFGGKADMAFPGITLSRSLLGVKRTWAVAAHMSAYDPKR
Ga0126378_123271902	3300010361	Tropical Forest Soil	MAATGPKQTWRIALHMSAFGGKADMTVCGCLLSRSLLGGKRTWAGALHMSAFDPKRTFSVMGPFSLRWVEIPKC
Ga0126377_109601061	3300010362	Tropical Forest Soil	AILFAALHESAIGPKRTCASALHMSAFGGKADIRKRSCLLSRSLSGVKQTSLVATHMSAFDPKRTLLSLF*
Ga0126377_118644932	3300010362	Tropical Forest Soil	MSAIGPKRTFPYVAFDVAFGGKADMTSCGSPLSRSLLGVKRTWLFALHMSAFDPKRTFTGLFLNT
Ga0126379_103651303	3300010366	Tropical Forest Soil	MSAIGPKRTWTSALHMSAFGGKADMTFCGISLSRSLLGVKQTFRFAAHMSAFDPKRTSAAALQVCYFKP
Ga0126379_108737182	3300010366	Tropical Forest Soil	MSVIGPKRISPVAPHMSAFGGKADLTVCRCPLSRSLLGVKRTCCVALHMSAFDPKRTFGSEDCCYA
Ga0126379_119457012	3300010366	Tropical Forest Soil	MSAIGPKRTSQIAPHMSALGGKADMTVCESPLSRSLLGVKRTSLFAAQTSAFDPKQTLGCKARHSRVHAGSNP
Ga0126379_126677562	3300010366	Tropical Forest Soil	MNGGMSAIGPKQTWAGALHMSAFGGKADMTVCGCLLSRSLLGAKRTSLFAAHMSAFDP
Ga0126379_127400331	3300010366	Tropical Forest Soil	MSAIGPKRTFLFAPHMSASGGKADMTLCGNTHSRSLLGVKRTCSFALHMSAFDPKRTS
Ga0105239_114469902	3300010375	Corn Rhizosphere	VIGMMSAIGPKQTLLVAPHMSPFGAKADMALCGNSLWRSLLGVKRTCSLALHMSAFDPKRTSGPA
Ga0126381_1008950401	3300010376	Tropical Forest Soil	VESTVTSCISTSCLRPVGMSAIGPRRTSLVALHMSACAGKADMTVCGSPLSRSLLGVKRTCRFALHESAYDPKRTLVVLASVLV*
Ga0157350_10024991	3300012499	Unplanted Soil	VTPFFALHESAIGPKQTLARALHMSAFGGKADTTIWACLLLRSLLGVKRTWVGALHMSAFDPKRTLSPL
Ga0126375_100602921	3300012948	Tropical Forest Soil	KRLSFYMSAIGPKQKWGTALHMSAFEGKADMTVCGCLLSRSLLGVKRTSVAALHESAFDPKRTLLSLF*
Ga0164309_110034042	3300012984	Soil	MSAFGPKRTSLVAPHMSAIGGNADMTLCGNPLSRLLLGAKRTCPFALHMSANDPK
Ga0164307_101641991	3300012987	Soil	VIAGMSAFGPKRTSLVAPHMSAFGGKADMIFCEGPLSRSLLGAKRTSLFALHMSAFDLKRTYWF
Ga0164307_115745531	3300012987	Soil	MSAFGPKRTCVAALHESAIGGKADMTIGTCPLSWSLLGVKRTWVGALHMSAFDPKRT
Ga0182036_101521043	3300016270	Soil	MSAFGPKRTLPCALHESAFGGKADMTLCGCPLFRSLLGVKRTWVIAAHMSAFDPKRTSQSLNSNFMGSR
Ga0182040_101048921	3300016387	Soil	MSAIGPKQTSLVAPHMSAFGGKADIAVCGSPLSRSLLGVKRTWLVAAHMSAFDPKRTRAI
Ga0187775_100080284	3300017939	Tropical Peatland	MSCAMSAFGPKRTWVSAPHMSAFGGKADMIFCGNPLLRSLLELKRTLAVCGAHVRF
Ga0187777_113479261	3300017974	Tropical Peatland	MMPAIGPKRTCAGALQMSAFVIKADMTIGTCSLSWSLSDVKQTSLVAAQMSASDPKRTLV
Ga0187765_101024273	3300018060	Tropical Peatland	MMPAIGPKRTCAGALQMSAFVIKADMTIGTCSLSWSLSDVKQTSLVAAQMSASDP
Ga0207663_101731942	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMSAIGPKQTLLVAPHMSPFGAKADMALCGNSLWRSLLGVKRTCSLALHMSAF
Ga0207701_101923293	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSAIGPKQTLASALHMSALRGKADITIAACLLLRSLLGVKRTSLFAAHRSAYDPK
Ga0207712_104139612	3300025961	Switchgrass Rhizosphere	MTGGMSAIGPWPTFRFALHLSAFGGKADMTVRRSPLSLLGVKRTCRFALHMSAFDPKRTCPSDVLG
Ga0207678_100604615	3300026067	Corn Rhizosphere	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVKRTSHFAAQMSAYDPKRTFLPR
Ga0207698_114766042	3300026142	Corn Rhizosphere	MSAFGPKQTSLVALHMSAFGGKADMTVYRSPLSRSLLGVKRTSLIATHMSASD
Ga0209814_100596302	3300027873	Populus Rhizosphere	MKGAMSAFGPKRTSVAAPHMSAFGGKADMTVCGNPLLRSLLGAKRTCLFALHMSANDPKRTF
Ga0207428_106889861	3300027907	Populus Rhizosphere	MSAIGPKRTSLAAPHMSAFGGKADMQFCRCLLLRSLLGVKRTWVGALHMSAFDPKRTLGLIAVWASYA
Ga0209382_100933106	3300027909	Populus Rhizosphere	MSAFGPKQTWASALHMSAFGGKADMALCGNSLLRSLLGVKRTWVGALHMSAFDPKRTLAVHCGSGFDAD
Ga0209382_103386772	3300027909	Populus Rhizosphere	MNGRMSAFGPKRTSLVAPHMSAFGGKADMTVCGNPLLRSLLGAKRTCLIALHMSANDPK
Ga0209382_117208512	3300027909	Populus Rhizosphere	LNFEMSAIGPKQTLLIAPQMSAFVAKADMAFWGISLSRSLLGVKRTWLVAARMSAFDPKR
Ga0318538_100872462	3300031546	Soil	MSAIGPKQTSLVAPHMSAFGGKADMAVCGSPLSRSLLGVKRTWLVAAHMSAFDPKRTRAIDLL
Ga0310915_110091191	3300031573	Soil	MSAIGPKRTSLIAPHMSAFGGKAEMAFFGMSLSRSLLGVKRTWLFAAHMSAYDPKRTSLVRPDTMPL
Ga0318503_101766081	3300031794	Soil	MSAFGPKRTLAIALHMSALRGKADMTVCGSPLSRSLLGVKRTCLCALRMSAYDPKRTSVAVKPLHVCGLG
Ga0310907_102884732	3300031847	Soil	MSAIGPKLTSPSAAHMSAFGGKADMTVCRSPLSWSLSGVKQTSLVAVHMSANDPKRTS
Ga0310893_100111973	3300031892	Soil	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVKRTSHFAAQMSAYDPK
Ga0310893_100180002	3300031892	Soil	MTGGMSAIGPWPTFRFALHLSAFGGKADMTVRRSPLSRSLLGVKRTCRFALHMSAFDPKRTCPSDVLG
Ga0310893_103447361	3300031892	Soil	MSAIGPKRTSLVAAHMSAFGVKADMIFCGSPLSRSLLGVKRTWLVAAPMSAFDPKRTSAKLQCASSKV
Ga0310912_110452842	3300031941	Soil	MSAIGPNQTSASAAHMSAFRGKADMIVCGRPLSRSLLGVKRIWRLALHMSAFDPK
Ga0310885_100594332	3300031943	Soil	MSAIGPKLTSPSAAHMSAFGGKADMTVCRSPLSWSLSGVKQTSLVAVHMSANDPKRTSASALHM
Ga0306926_114530372	3300031954	Soil	MSAIGPKRTSPLALHMSAFRGKADMTVCRCPLSRSLLGLKRTSLFAAHMFAYDPKRTLGLIS
Ga0310899_101099441	3300032017	Soil	MSAIGPKQTSAPALHMFAFGGKADMTVCANPLLGVKRTCRFALHMSAFDPKR
Ga0307471_1021169342	3300032180	Hardwood Forest Soil	VIAGMSAFGPKRTSLVAPHMSAFGGKADMIFCEGPLSRSLLGAKRTSLFALHMSAFDLKRTYWFDQALAILLCAKRFR
Ga0306920_1024990202	3300032261	Soil	MKRAMSAYGPKRTSLVATHMSAFGGKADMTVCGSPLSRSLFGAKRTCLFALHMSAFDPKRTLGLISI
Ga0335080_121539991	3300032828	Soil	MSAIGPKQTLRLALHMSAIGGKADMTFARCLLSRSLLKVERTCSFASHMSAFDPKRTLRHRRLGSRLYIIS
Ga0326723_0210193_683_862	3300034090	Peat Soil	MRLDGRCGVSAIGPKRTSLVAPHMSAFGGKGDMTVRGNPLLRSLLGARRTSLVALHMSAN
Ga0373959_0126144_394_630	3300034820	Rhizosphere Soil	MTGGMSAIGPWPTFRFALHLSAFGGKADMTVRRSPLSRSLLGVKRTCRFALHMSAFDPKRTFGRLASISSSGHVEPVRY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093461

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences