Metagenome / Metatranscriptome Family F093521

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093521
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	54 residues
Representative Sequence	MDRNDDVSTDENVLTFNVSDDALERAADLADGKAWTLNFCTYNYYQCGPIGSRT
Number of Associated Samples	53
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.53 %
% of genes near scaffold ends (potentially truncated)	24.53 %
% of genes from short scaffolds (< 2000 bps)	81.13 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.358 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (36.792 % of family members)
Environment Ontology (ENVO)	Unclassified (62.264 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (84.906 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.20% β-sheet: 0.00% Coil/Unstructured: 87.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04199	Cyclase	10.38
PF03401	TctC	4.72
PF01268	FTHFS	4.72
PF00027	cNMP_binding	3.77
PF13649	Methyltransf_25	3.77
PF03466	LysR_substrate	2.83
PF16868	NMT1_3	1.89
PF07690	MFS_1	1.89
PF04392	ABC_sub_bind	1.89
PF13531	SBP_bac_11	0.94
PF03320	FBPase_glpX	0.94
PF12706	Lactamase_B_2	0.94
PF11730	DUF3297	0.94
PF00589	Phage_integrase	0.94
PF02774	Semialdhyde_dhC	0.94
PF09859	Oxygenase-NA	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	10.38
COG2759	Formyltetrahydrofolate synthetase	Nucleotide transport and metabolism [F]	4.72
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.72
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.89
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.94
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.94
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.36 %
Unclassified	root	N/A	22.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.36 %
Unclassified	root	N/A	22.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.36 %
Unclassified	root	N/A	22.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.87 %
Unclassified	root	N/A	22.64 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.49 %
Unclassified	root	N/A	22.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.68 %
Unclassified	root	N/A	22.64 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	29.25 %
Unclassified	root	N/A	22.64 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.72 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	26.42 %
Unclassified	root	N/A	22.64 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.72 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.64 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	20.75 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.72 %
Acinetobacter calcoaceticus/baumannii complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.64 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	20.75 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4.72 %
Acinetobacter baumannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100003390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10305	Open in IMG/M
3300005332\|Ga0066388_100717412	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300005332\|Ga0066388_101714340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1112	Open in IMG/M
3300005332\|Ga0066388_102031460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1031	Open in IMG/M
3300005332\|Ga0066388_102056284	All Organisms → cellular organisms → Bacteria → Proteobacteria	1026	Open in IMG/M
3300005332\|Ga0066388_102478634	All Organisms → cellular organisms → Bacteria → Proteobacteria	942	Open in IMG/M
3300005332\|Ga0066388_103681267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	782	Open in IMG/M
3300005332\|Ga0066388_103708351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300005332\|Ga0066388_104103705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	743	Open in IMG/M
3300005332\|Ga0066388_104404028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300005332\|Ga0066388_108846251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	500	Open in IMG/M
3300005363\|Ga0008090_12400340	Not Available	693	Open in IMG/M
3300005436\|Ga0070713_100637979	Not Available	1014	Open in IMG/M
3300005569\|Ga0066705_10136257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1496	Open in IMG/M
3300005764\|Ga0066903_100474931	All Organisms → cellular organisms → Bacteria → Proteobacteria	2104	Open in IMG/M
3300005764\|Ga0066903_100541036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1992	Open in IMG/M
3300005764\|Ga0066903_100819293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1668	Open in IMG/M
3300005764\|Ga0066903_100976418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1545	Open in IMG/M
3300005764\|Ga0066903_101114615	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300005764\|Ga0066903_101848809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1155	Open in IMG/M
3300005764\|Ga0066903_101920983	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300005764\|Ga0066903_102744618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	955	Open in IMG/M
3300005764\|Ga0066903_103244161	Not Available	879	Open in IMG/M
3300005764\|Ga0066903_103756155	Not Available	816	Open in IMG/M
3300005764\|Ga0066903_106284466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	620	Open in IMG/M
3300006032\|Ga0066696_10365430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	941	Open in IMG/M
3300006804\|Ga0079221_10120088	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300006806\|Ga0079220_10226539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1100	Open in IMG/M
3300006854\|Ga0075425_101137988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	888	Open in IMG/M
3300009792\|Ga0126374_10236303	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300010046\|Ga0126384_11290045	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300010046\|Ga0126384_12484019	Not Available	503	Open in IMG/M
3300010048\|Ga0126373_10090452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2810	Open in IMG/M
3300010048\|Ga0126373_10190525	All Organisms → cellular organisms → Bacteria → Proteobacteria	1980	Open in IMG/M
3300010048\|Ga0126373_10430648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1350	Open in IMG/M
3300010048\|Ga0126373_10598977	Not Available	1154	Open in IMG/M
3300010048\|Ga0126373_10748832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1037	Open in IMG/M
3300010048\|Ga0126373_11436094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	755	Open in IMG/M
3300010048\|Ga0126373_11617581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	712	Open in IMG/M
3300010335\|Ga0134063_10526864	Not Available	594	Open in IMG/M
3300010358\|Ga0126370_10868991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	811	Open in IMG/M
3300010360\|Ga0126372_11366714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300010361\|Ga0126378_10115386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2679	Open in IMG/M
3300010361\|Ga0126378_12125906	Not Available	640	Open in IMG/M
3300010366\|Ga0126379_10162596	All Organisms → cellular organisms → Bacteria → Proteobacteria	2098	Open in IMG/M
3300010366\|Ga0126379_11281105	Not Available	839	Open in IMG/M
3300010366\|Ga0126379_11756691	Not Available	725	Open in IMG/M
3300010366\|Ga0126379_12003880	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300010366\|Ga0126379_13381233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300010376\|Ga0126381_100146667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3092	Open in IMG/M
3300010376\|Ga0126381_101772473	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300010376\|Ga0126381_102463057	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300010376\|Ga0126381_103102633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	658	Open in IMG/M
3300010376\|Ga0126381_103355634	Not Available	631	Open in IMG/M
3300010376\|Ga0126381_104918010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	513	Open in IMG/M
3300010398\|Ga0126383_12181445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	640	Open in IMG/M
3300010863\|Ga0124850_1030036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1744	Open in IMG/M
3300012971\|Ga0126369_10173236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	2054	Open in IMG/M
3300012971\|Ga0126369_10259418	All Organisms → cellular organisms → Bacteria → Proteobacteria	1715	Open in IMG/M
3300012971\|Ga0126369_10384663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1436	Open in IMG/M
3300016357\|Ga0182032_11535542	Not Available	578	Open in IMG/M
3300016371\|Ga0182034_10181005	All Organisms → cellular organisms → Bacteria → Proteobacteria	1613	Open in IMG/M
3300016404\|Ga0182037_10144746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1782	Open in IMG/M
3300016422\|Ga0182039_10054655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2738	Open in IMG/M
3300016422\|Ga0182039_10390304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300017970\|Ga0187783_10006232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8760	Open in IMG/M
3300017970\|Ga0187783_10719474	Not Available	721	Open in IMG/M
3300018062\|Ga0187784_10012379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6884	Open in IMG/M
3300018086\|Ga0187769_11247655	Not Available	562	Open in IMG/M
3300018090\|Ga0187770_10063835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2682	Open in IMG/M
3300018433\|Ga0066667_10383075	Not Available	1130	Open in IMG/M
3300018482\|Ga0066669_10088156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2113	Open in IMG/M
3300021402\|Ga0210385_10091023	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300021560\|Ga0126371_10116284	All Organisms → cellular organisms → Bacteria → Proteobacteria	2690	Open in IMG/M
3300021560\|Ga0126371_10130254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2554	Open in IMG/M
3300021560\|Ga0126371_10143283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2444	Open in IMG/M
3300021560\|Ga0126371_10380899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1550	Open in IMG/M
3300021560\|Ga0126371_10425706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1472	Open in IMG/M
3300021560\|Ga0126371_11854841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300021560\|Ga0126371_12383011	Not Available	640	Open in IMG/M
3300021560\|Ga0126371_13284082	Not Available	547	Open in IMG/M
3300021560\|Ga0126371_13768108	Not Available	511	Open in IMG/M
3300021560\|Ga0126371_13798757	Not Available	509	Open in IMG/M
3300027071\|Ga0209214_1012901	Not Available	1025	Open in IMG/M
3300027725\|Ga0209178_1124496	Not Available	875	Open in IMG/M
3300027765\|Ga0209073_10241730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	699	Open in IMG/M
3300027874\|Ga0209465_10385794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	701	Open in IMG/M
3300027910\|Ga0209583_10103022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300031543\|Ga0318516_10004532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6177	Open in IMG/M
3300031549\|Ga0318571_10447098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	512	Open in IMG/M
3300031770\|Ga0318521_10001019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	8897	Open in IMG/M
3300031792\|Ga0318529_10219679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300031890\|Ga0306925_11946769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	557	Open in IMG/M
3300031896\|Ga0318551_10372298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300031910\|Ga0306923_12301919	Not Available	537	Open in IMG/M
3300031910\|Ga0306923_12350007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	530	Open in IMG/M
3300031912\|Ga0306921_12339640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	559	Open in IMG/M
3300031941\|Ga0310912_10461412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	990	Open in IMG/M
3300031942\|Ga0310916_11264702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	608	Open in IMG/M
3300031942\|Ga0310916_11567285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	535	Open in IMG/M
3300031946\|Ga0310910_10357974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
3300031946\|Ga0310910_10882910	Not Available	702	Open in IMG/M
3300031962\|Ga0307479_10262517	Not Available	1706	Open in IMG/M
3300032043\|Ga0318556_10049950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2020	Open in IMG/M
3300032052\|Ga0318506_10000028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	18961	Open in IMG/M
3300032076\|Ga0306924_12221125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.11%
Aquatic	Environmental → Aquatic	0.94%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.11%
Sediment	Environmental → Aquatic → Sediment	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.87%
Loam	Environmental → Terrestrial → Soil → Loam	24.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	36.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	22.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.43%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1000033906	3300005332	Tropical Forest Soil	VDRIDDVSTEENILVFNAPDEALERAAALTDGPAWTMNFCTYNYYQCGPIGSRT*
Ga0066388_1007174123	3300005332	Tropical Forest Soil	MDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYDYYQCGPIGSRS*
Ga0066388_1017143403	3300005332	Tropical Forest Soil	MDKYDDASTDENVLIFNVPDEALERAAGTQGQAWTLNYCTYNYYQCGPIGSRT*
Ga0066388_1020314603	3300005332	Tropical Forest Soil	MEVGLMDRNDDVSTDENVLTSNICDDALGRAAGPADGQAWTLNYCTHNYYQCGPIGSRT*
Ga0066388_1020562842	3300005332	Tropical Forest Soil	MERFDDADTDDNILIFNIPDDALERAAGLTDGPAFTMNFCTYNYYQCGPIG*
Ga0066388_1024786341	3300005332	Tropical Forest Soil	MEVRLVDHRDDVSTDENVLTFNISDDALERAAGRADGQAWTLNFRTYAFYQCEPIGSRP*
Ga0066388_1036812672	3300005332	Tropical Forest Soil	MDGHDDVGNDENVLAFNVPDDALERAAWTLNYCTYNYYQCGPIG*
Ga0066388_1037083511	3300005332	Tropical Forest Soil	MDRNDVSNDENDVLAFNLPDDELERAAGVADSPAWTLNYCTYNYYQCGPIG*
Ga0066388_1041037051	3300005332	Tropical Forest Soil	MEVGLMDRNDDVSTDENVLTFNVSDDALERAVGPTDGQAWTLNYCTYNYYQCGPIGIRT*
Ga0066388_1044040282	3300005332	Tropical Forest Soil	MDRTDDVITDENILTSSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS*
Ga0066388_1088462512	3300005332	Tropical Forest Soil	MEVGLMDRADHATTEENVLTFNVCDDALERAAGGADGQAWTMNYCTY
Ga0008090_124003402	3300005363	Tropical Rainforest Soil	MERFNDVGNDENVLTLDIPDDVLERTAALADGPAWTLNFCTYNYYQCGPIGSRA*
Ga0070713_1006379792	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDKYDDISIDENILILNVPDDVLERAAAAPDGPAWTLNYCTYNYYQCGPIG*
Ga0066705_101362572	3300005569	Soil	MEAALMDRNDDVRIDEDALTFNVADDALERAAAPDGQAWTLNFCTYNYYQCGPIGSRT*
Ga0066903_1004749313	3300005764	Tropical Forest Soil	MDRIDDVGTDENILTVDLPDDALESAAGRAEGQAWTLNFCTYNYYQCGPIGSRT*
Ga0066903_1005410362	3300005764	Tropical Forest Soil	MDCNDDVSTDENVLIFNVPDDALERAAGLTGGLAWTLNYCTYNYYQCGPIGSRT*
Ga0066903_1008192933	3300005764	Tropical Forest Soil	MDKRDEVSTDENILIFSVSDEALEHATAAPHCPVWTFNYCTYNYYQCGPIGSRT*
Ga0066903_1009764183	3300005764	Tropical Forest Soil	MDRNDDVSTDENVLTSNICDDALERAAGPADGQAWTLNYCTYNYYQCGPIGSRT*
Ga0066903_1011146152	3300005764	Tropical Forest Soil	MERFNDVGSEENILNFNVADDALERVAVLADGPAWTLNFCTYNYYQCGLIGIHA*
Ga0066903_1018488091	3300005764	Tropical Forest Soil	MDHKDDVSIDQNVLTFNISDDALERAAGHADGKAWTLNFCTYDYYQCGPVGSRP*
Ga0066903_1019209832	3300005764	Tropical Forest Soil	MESNDDVSTDENALTCDVSDDALERAAGCADGQAWALNFCTYDYSQCGPIGSRL*
Ga0066903_1027446182	3300005764	Tropical Forest Soil	VDHRDDVSTDENVLTFNISDDALERAAGRADGQAWTLNFRTYAFYQCEPIGSRP*
Ga0066903_1032441612	3300005764	Tropical Forest Soil	MDNYDDVSTDENVLIFNVPDDALERAAGLADGPAWTLNYCTYNYYQCGPIG*
Ga0066903_1037561551	3300005764	Tropical Forest Soil	MDRNDDVSTDENVLTFNVSDDALERAAGTHGQAWTLNYCTYNYYQCGPIGIRT*
Ga0066903_1062844662	3300005764	Tropical Forest Soil	MDRNDDVSTDENVLTFNVSDDALERAVGPTDGQAWTLNYCTYNYYQCGPIGIRT*
Ga0066696_103654301	3300006032	Soil	MDRNDDVRIDEDALTFNVADDALERAAAPDGQGWTLNFCTYNYYQCGPIGSRT*
Ga0079221_101200882	3300006804	Agricultural Soil	MEKCDEVDTNENVLAFNVTDDVLERAGCLTEGPAFTLNFCTYNYYQCGPIGRQA*
Ga0079220_102265392	3300006806	Agricultural Soil	MDRNDDVGPDENVLTFDVADDALERAAGRTDGQAWTINFCTYNYYQCGPIGNRT*
Ga0075425_1011379882	3300006854	Populus Rhizosphere	IDENILILNVPDDVLERAAAAPDGPAWTLNYCTYNYYQCGPIG*
Ga0126374_102363031	3300009792	Tropical Forest Soil	MERFNDVGSEENILNFNVADDALERVAVLADGPAWTLNFCTYNYYQCGPIGIHA*
Ga0126384_112900452	3300010046	Tropical Forest Soil	MEVRLVDHRDDVSTDENVLTFNISDDALERAAGRADGQAWTLNFRTYAFY
Ga0126384_124840192	3300010046	Tropical Forest Soil	SNEVWRSFMDGYADVSTDENVLVFNVPDEALERGAGLSDGPAWTLNFCTYNYYQCGPIGSPT*
Ga0126373_100904525	3300010048	Tropical Forest Soil	MEIALMDSNDDVKTDENGLTCKVSDDALERAAGCADGQAWTLNFCTYDYSQCGPIGSRL*
Ga0126373_101905253	3300010048	Tropical Forest Soil	DDASTDENVLIFNVPDEALERAAGTQRQAWTLNYCTYNYYQCGLIGSRT*
Ga0126373_104306483	3300010048	Tropical Forest Soil	MEVGLMDRTDDVITDENILTSSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS*
Ga0126373_105989771	3300010048	Tropical Forest Soil	MERFNDVGSEENILNFNVADDALERVAVLADGPAWTLNFCTYNYYQCGPIGIHD*
Ga0126373_107488323	3300010048	Tropical Forest Soil	MDRADDVSTEENVLTFNVSDDALERAAGRADGRAWTMNFCTYNYEQCGPIGSRS*
Ga0126373_114360942	3300010048	Tropical Forest Soil	MDRIDDVNTDENILACDLPDDALECAAGRAEGQAWTLNFCTYNYYQCGPIGSRT*
Ga0126373_116175812	3300010048	Tropical Forest Soil	MEVGLMDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYDYYQCGPIGSRS*
Ga0134063_105268642	3300010335	Grasslands Soil	MEAALMDRNDDVRIDEDALTFNVADDALERAAAPDGQGWTLNFCTYNYYQCGPIGSRT*
Ga0126370_108689913	3300010358	Tropical Forest Soil	MEVGLMDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNY
Ga0126372_113667142	3300010360	Tropical Forest Soil	MERFNDGGSEENILNFNVADDALERAAALADGRAWTLNFCTYNYYQCGPIGIHA*
Ga0126378_101153862	3300010361	Tropical Forest Soil	MDSNDDVSTDENALTCDVSDDALERAAGCADGQAWTLNFCTYDYSQCGPIGSRL*
Ga0126378_121259061	3300010361	Tropical Forest Soil	MDHKDDVSIDQNVLTFNISDDALKRAAGHADGKAWTLNFCTYDYYQCGPVGSRP*
Ga0126379_101625964	3300010366	Tropical Forest Soil	MDKYDDASADENVLIFNVPDEALERAAGTQGQAWTLNYCTYNYYQCGPIGSRT*
Ga0126379_112811051	3300010366	Tropical Forest Soil	MEVRLVDHRDDVSTDENVLTFNISDDALERAAGRADGQAWTLN
Ga0126379_117566911	3300010366	Tropical Forest Soil	MDNYDDVSTDENVLIFNVPDDALERAAGLADGPAWILNYCTYNYYQCGPIG*
Ga0126379_120038801	3300010366	Tropical Forest Soil	MERFNDVGSEENILNFNVADDALERAAALADGRAWTLNFCTYNYYQCGPIGSRT*
Ga0126379_133812332	3300010366	Tropical Forest Soil	MDRIDDVGTDENILTCDFPDDALECAAGRAEGQAWTLNFCTYNYYQCGPIGSRT*
Ga0126381_1001466673	3300010376	Tropical Forest Soil	MDRIDDVNTDENILACDLPDDALECAAGRAEVQAWTLNFCTYNYYQCGPIGSRT*
Ga0126381_1017724732	3300010376	Tropical Forest Soil	MDRNDDVSTDENVLTFNVSDDALERAADLADGKAWTLNFCTYNYYQCGPIGSRT*
Ga0126381_1024630572	3300010376	Tropical Forest Soil	MEIALMDSNDDVSTDENALTCDVSDDALERAAGCADGQAWALNFCTYDYSQCGPIGSRL*
Ga0126381_1031026332	3300010376	Tropical Forest Soil	MDGHDDASNDENVLTFNVSDDALERAAGLTDGRAWTLNFCTYNYYQCGPIGIRT*
Ga0126381_1033556342	3300010376	Tropical Forest Soil	MEKYDDVNTDENVLTFNVADDALERAAGLADGPAWTLNFCTYNYYQCGPVG
Ga0126381_1049180102	3300010376	Tropical Forest Soil	MEVGLTERTDKVITEENVLTFNVSDDALERAAGGADGQAWTMNYCTYNYLQCGPIGI
Ga0126383_121814451	3300010398	Tropical Forest Soil	MGGWRSFMDGHDDVGNDENVLAFNVPDDALERAAWTLNYCTYNYYQCGPIG*
Ga0124850_10300362	3300010863	Tropical Forest Soil	MDKYDDASTDENVLIFNVPDEALERAAGTQRQAWTLNYCTYNYYQCGPIGSRT*
Ga0126369_101732364	3300012971	Tropical Forest Soil	MEVQLMDRNDDVSTDENVLTFNVSDDALERAAGTHGQAWTLNYCTYNYYQCGPIGIRT*
Ga0126369_102594181	3300012971	Tropical Forest Soil	MEIALMDSNDDVSTDENALTCDVSDDALERAAGCADGQAWTLNFCTYDYSQCGPIGSR
Ga0126369_103846633	3300012971	Tropical Forest Soil	MDNYDDVSTDENVLIFNVPDDALERAAGLADGPAWTLNYCTYNYYQCGP
Ga0182032_115355421	3300016357	Soil	GWTACMEVGLMDRNDDVSAEENVLSFNVSDDALECAADLADGQAWTLNFCTYNYYQCGPIGSRT
Ga0182034_101810052	3300016371	Soil	MDKYDDGSDDENVLIFNVPDDELERAAALPDGVAWTLNFCTYDYYQCGPIG
Ga0182037_101447462	3300016404	Soil	MDKYDDGSDDENVLIFNVPDDELERAAALPHGVAWTLNFCTYDYYQCGPIG
Ga0182039_100546554	3300016422	Soil	STEENILVFNAPDEALERAAALTDGPAWTMNFCTYNYYQCGPIGSRT
Ga0182039_103903043	3300016422	Soil	LMDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0187783_100062324	3300017970	Tropical Peatland	MDTHDDYDVSAEENLLNVNVPNDALERAAGSIGGPAWTMNYCTYNYYQCGPIGSRA
Ga0187783_107194741	3300017970	Tropical Peatland	MNDDVDVQENVLIFNVPDDALERAAESTGGQELTWNYCTYNYYQCGPIGFSRS
Ga0187784_100123792	3300018062	Tropical Peatland	MDRYDDVGAEENLLDSNIPDDALERAAGPIGAPVWTMNYCTYNYYQCGPIGSRA
Ga0187769_112476552	3300018086	Tropical Peatland	MFMDRYDDVGAEENLLDSNIPDDALERAAGPIGAPVWTMNYCTYNYYQCGPIGSRA
Ga0187770_100638351	3300018090	Tropical Peatland	AEENLLDSNIPDDALERAAGPIGAPVWTMNYCTYNYYQCGPIGSRA
Ga0066667_103830751	3300018433	Grasslands Soil	MDRNDDVRIDEDALTFNVADDALERAAAPDGQAWTLNFCTYNYYQCGPIGSRT
Ga0066669_100881562	3300018482	Grasslands Soil	MDRNDDVRIDEDALTFNVADDALERAAAPDGQGWTLNFCTYNYYQCGPIGSRT
Ga0210385_100910232	3300021402	Soil	LDQRNDGDRDEDILNSNIPDDALERAAGTCETAAITMNFCTYNYYQCGPIGGPIGN
Ga0126371_101162844	3300021560	Tropical Forest Soil	MDSNDDVSTDENALTCDVSDDALERAAGCADGQAWALNFCTYDYSQCGPIGSRL
Ga0126371_101302544	3300021560	Tropical Forest Soil	MDKYDDASTDENVLIFNVPDEALERAAGTQGQAWTLNYCTYNYYQCGLIGSRT
Ga0126371_101432834	3300021560	Tropical Forest Soil	MDRIDDVGTDENILTCDFPDDALECAAGRAEGQAWTLNFCTYNYYQCGPIGSRS
Ga0126371_103808992	3300021560	Tropical Forest Soil	MDNYDDVSTDENVLIFNVPDDALERAAGLADGPAWTLNYCTYNYYQCGPIG
Ga0126371_104257061	3300021560	Tropical Forest Soil	MDRNDDVSTDENVLTFNVSDDALERAAGTHGQAWTLNYCTYNYYQCGPIGSRT
Ga0126371_118548412	3300021560	Tropical Forest Soil	MDRIDDVGTDENILTVDLPDDALERAGGRAEGQAWTLNFCTYNYYQCGPIGSRT
Ga0126371_123830111	3300021560	Tropical Forest Soil	MEIALMDSNDDVKTDENGLTCKVSDDALERAAGCADGQAWTLNFCTYDYSQCGPIGSRL
Ga0126371_132840821	3300021560	Tropical Forest Soil	MDRTDNLSTDENVLTFDVSDDILERAAGITGSPAWTMNFCTYNFDQCGPIGSPS
Ga0126371_137681082	3300021560	Tropical Forest Soil	MEKYDHVNTDENVLTFNVADDALERAAGLADGPAWTLNFCTYNYYQCGPIGSRP
Ga0126371_137987572	3300021560	Tropical Forest Soil	MEVGLMDRTDDVITDENILTSSVSDDALERSAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0209214_10129013	3300027071	Forest Soil	MDKYDDISIDENILILNVPDDVLERAAAAPDGPAWTLNYCTYNYYQCGPIG
Ga0209178_11244962	3300027725	Agricultural Soil	MEKCDEVDTNENVLAFNVTDDVLERAGCLTEGPAFTLNFCTYNYYQCGPIGRQA
Ga0209073_102417301	3300027765	Agricultural Soil	MDRNDDVGPDENVLTFDVADDALERAAGRTDGQAWTINFCTYNYYQCGPIGNRT
Ga0209465_103857941	3300027874	Tropical Forest Soil	MDRADDVITDENILTSSVSDDALERAAGRADGQAWTLNFRTYAFYQCGPIGSRP
Ga0209583_101030221	3300027910	Watersheds	MDKYDDVSTDENVLIFNVPDDALERAAGLADGPAWTMNFCTYNYYQCGPIG
Ga0318516_100045325	3300031543	Soil	MDRIDDVSTEENILVFNAPDEALERAAALTDGPAWTMNFCTYNYYQCGPIGSRT
Ga0318571_104470982	3300031549	Soil	MDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0318521_100010196	3300031770	Soil	MDRIDDVSTEENILVFNAPDEAWERAAALTDGPAWTMNFCTYNYYQCGPIGSRT
Ga0318529_102196791	3300031792	Soil	TLCMEAGLMDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0306925_119467692	3300031890	Soil	MDRNDDVSAEENVLSFNVSDDALECAADLADGQAWTLNFCTYNYYQCGPIGSRT
Ga0318551_103722982	3300031896	Soil	CMEAGLMDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0306923_123019191	3300031910	Soil	NVLSFNVSDDALECAADLADGQAWTLNFCTYNYYQCGPIGSRT
Ga0306923_123500072	3300031910	Soil	MDKNDDASADEEVLSFDVPDDTLERAAGLGDGQAWTLNYCTYNYYQCGPIGSRP
Ga0306921_123396401	3300031912	Soil	MDRNDDVSAEENVLSFNVSDDALECAADLADGQAWTLNFCTYNYYQCGPIGS
Ga0310912_104614121	3300031941	Soil	MEAGLMDRTDDVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0310916_112647021	3300031942	Soil	MDKYDDVNTDENVLIFNVPDEALERAASLSDGPAWTLNYCTYDYYQCGPIGSRT
Ga0310916_115672851	3300031942	Soil	DKNDDASADEEVLSFDVPDDTLERAAGLGDGQAWTLNYCTYNYYQCGPIGSRP
Ga0310910_103579743	3300031946	Soil	DVITDENILISSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS
Ga0310910_108829102	3300031946	Soil	EVGLMDRNDDVSAEENVLSFNVSDDALECAADLADGQAWTLNFCTYNYYQCGPIGSRT
Ga0307479_102625174	3300031962	Hardwood Forest Soil	MDNYDDVSTDENVLIFNVPDDVLERAADLSDGPAFTFNFCTYNYYQCGPIG
Ga0318556_100499501	3300032043	Soil	TEENILVFNAPDEALERAAALTDGPAWTMNFCTYNYYQCGPIGSRT
Ga0318506_1000002814	3300032052	Soil	MDRIDDVSTEENILVFNAPDELERAAALTDGPAWTMNFCTYNYYQCGPIGSRT
Ga0306924_122211251	3300032076	Soil	SWTLCMEVGLMDRTDDVITDENILTSSVSDDALERAAGRADGQAWTLNFCTYNYYQCGPIGSRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093521

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences