NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F093540

Metagenome Family F093540

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F093540
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 64 residues
Representative Sequence MKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ
Number of Associated Samples 61
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 82.08 %
% of genes near scaffold ends (potentially truncated) 20.75 %
% of genes from short scaffolds (< 2000 bps) 75.47 %
Associated GOLD sequencing projects 48
AlphaFold2 3D model prediction Yes
3D model pTM-score0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (73.585 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(52.830 % of family members)
Environment Ontology (ENVO) Unclassified
(54.717 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(69.811 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 7.45%    β-sheet: 25.53%    Coil/Unstructured: 67.02%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF00011HSP20 50.00
PF00166Cpn10 22.64
PF00118Cpn60_TCP1 18.87
PF10504DUF2452 2.83
PF01521Fe-S_biosyn 0.94
PF00136DNA_pol_B 0.94
PF00085Thioredoxin 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 50.00
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 22.64
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 18.87
COG0316Fe-S cluster assembly iron-binding protein IscAPosttranslational modification, protein turnover, chaperones [O] 0.94
COG0417DNA polymerase B elongation subunitReplication, recombination and repair [L] 0.94
COG4841Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF familyFunction unknown [S] 0.94


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.58 %
All OrganismsrootAll Organisms26.42 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001934|GOS2267_101344All Organisms → cellular organisms → Bacteria1789Open in IMG/M
3300001948|GOS2228_1003491All Organisms → cellular organisms → Bacteria → Proteobacteria1409Open in IMG/M
3300001952|GOS2224_1019937All Organisms → cellular organisms → Bacteria → Proteobacteria1304Open in IMG/M
3300002040|GOScombined01_100815772All Organisms → cellular organisms → Bacteria → Proteobacteria1630Open in IMG/M
3300002408|B570J29032_108885006Not Available532Open in IMG/M
3300002835|B570J40625_100586100All Organisms → cellular organisms → Bacteria → Proteobacteria1024Open in IMG/M
3300006802|Ga0070749_10032374All Organisms → cellular organisms → Bacteria3251Open in IMG/M
3300006802|Ga0070749_10058869All Organisms → cellular organisms → Bacteria2322Open in IMG/M
3300006802|Ga0070749_10136359Not Available1434Open in IMG/M
3300006802|Ga0070749_10143873Not Available1390Open in IMG/M
3300006802|Ga0070749_10184009All Organisms → Viruses → environmental samples → uncultured virus1202Open in IMG/M
3300006802|Ga0070749_10200154All Organisms → cellular organisms → Bacteria1145Open in IMG/M
3300006802|Ga0070749_10223887Not Available1071Open in IMG/M
3300006802|Ga0070749_10265696Not Available969Open in IMG/M
3300006802|Ga0070749_10269411Not Available961Open in IMG/M
3300006802|Ga0070749_10657832Not Available562Open in IMG/M
3300006810|Ga0070754_10001997Not Available15467Open in IMG/M
3300006810|Ga0070754_10064855All Organisms → cellular organisms → Bacteria1882Open in IMG/M
3300006919|Ga0070746_10001636Not Available13312Open in IMG/M
3300006919|Ga0070746_10073971All Organisms → cellular organisms → Bacteria1733Open in IMG/M
3300006919|Ga0070746_10181076Not Available1012Open in IMG/M
3300006919|Ga0070746_10339215Not Available683Open in IMG/M
3300007344|Ga0070745_1038928Not Available2002Open in IMG/M
3300007345|Ga0070752_1391437Not Available515Open in IMG/M
3300007346|Ga0070753_1167908Not Available824Open in IMG/M
3300007538|Ga0099851_1006109Not Available5048Open in IMG/M
3300007538|Ga0099851_1006690Not Available4814Open in IMG/M
3300007538|Ga0099851_1017420All Organisms → cellular organisms → Bacteria2917Open in IMG/M
3300007538|Ga0099851_1023535Not Available2487Open in IMG/M
3300007538|Ga0099851_1056287Not Available1539Open in IMG/M
3300007538|Ga0099851_1068600Not Available1376Open in IMG/M
3300007540|Ga0099847_1073241Not Available1059Open in IMG/M
3300007541|Ga0099848_1059369Not Available1524Open in IMG/M
3300007541|Ga0099848_1308264All Organisms → Viruses → environmental samples → uncultured virus542Open in IMG/M
3300007541|Ga0099848_1324140Not Available525Open in IMG/M
3300007542|Ga0099846_1018371Not Available2726Open in IMG/M
3300007542|Ga0099846_1045778Not Available1666Open in IMG/M
3300007542|Ga0099846_1088363Not Available1149Open in IMG/M
3300007542|Ga0099846_1098271Not Available1079Open in IMG/M
3300007542|Ga0099846_1118214Not Available969Open in IMG/M
3300007960|Ga0099850_1167487Not Available878Open in IMG/M
3300007960|Ga0099850_1308923Not Available599Open in IMG/M
3300008113|Ga0114346_1053544Not Available2002Open in IMG/M
3300008120|Ga0114355_1223425Not Available579Open in IMG/M
3300008267|Ga0114364_1009557All Organisms → Viruses → environmental samples → uncultured virus4540Open in IMG/M
3300008267|Ga0114364_1015880All Organisms → cellular organisms → Bacteria3259Open in IMG/M
3300008267|Ga0114364_1126777Not Available1420Open in IMG/M
3300008459|Ga0114865_1151287Not Available716Open in IMG/M
3300009000|Ga0102960_1042487Not Available1679Open in IMG/M
3300009000|Ga0102960_1353818Not Available518Open in IMG/M
3300009001|Ga0102963_1454414Not Available502Open in IMG/M
3300009149|Ga0114918_10005031All Organisms → Viruses11387Open in IMG/M
(restricted) 3300013126|Ga0172367_10034726All Organisms → Viruses4310Open in IMG/M
(restricted) 3300013130|Ga0172363_10790663Not Available591Open in IMG/M
(restricted) 3300013132|Ga0172372_10625849Not Available691Open in IMG/M
(restricted) 3300013133|Ga0172362_10368309All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1005Open in IMG/M
3300014801|Ga0119946_1007806Not Available1157Open in IMG/M
3300017956|Ga0181580_10367981Not Available964Open in IMG/M
3300017963|Ga0180437_10778470Not Available691Open in IMG/M
3300017985|Ga0181576_10513084Not Available735Open in IMG/M
3300017989|Ga0180432_10752521Not Available680Open in IMG/M
3300018428|Ga0181568_11256394Not Available554Open in IMG/M
3300020162|Ga0211735_11407988Not Available797Open in IMG/M
3300020172|Ga0211729_10608948All Organisms → Viruses → environmental samples → uncultured virus1638Open in IMG/M
3300020183|Ga0194115_10013178Not Available7255Open in IMG/M
3300020183|Ga0194115_10056706Not Available2426Open in IMG/M
3300020193|Ga0194131_10030224Not Available4489Open in IMG/M
3300020198|Ga0194120_10306486Not Available794Open in IMG/M
3300020220|Ga0194119_10479757Not Available788Open in IMG/M
3300021959|Ga0222716_10186456Not Available1325Open in IMG/M
3300021959|Ga0222716_10206595Not Available1239Open in IMG/M
3300021959|Ga0222716_10594369Not Available605Open in IMG/M
3300021960|Ga0222715_10105607All Organisms → Viruses → environmental samples → uncultured virus1811Open in IMG/M
3300021960|Ga0222715_10148800Not Available1453Open in IMG/M
3300021960|Ga0222715_10298317Not Available917Open in IMG/M
3300021961|Ga0222714_10173517All Organisms → Viruses → environmental samples → uncultured virus1269Open in IMG/M
3300021961|Ga0222714_10328433Not Available829Open in IMG/M
3300021961|Ga0222714_10602295Not Available548Open in IMG/M
3300021962|Ga0222713_10102055All Organisms → Viruses → environmental samples → uncultured virus2054Open in IMG/M
3300021962|Ga0222713_10565434Not Available669Open in IMG/M
3300022053|Ga0212030_1011057Not Available1125Open in IMG/M
3300022063|Ga0212029_1001999Not Available1888Open in IMG/M
3300022068|Ga0212021_1015336All Organisms → Viruses → environmental samples → uncultured virus1373Open in IMG/M
3300022167|Ga0212020_1040296Not Available791Open in IMG/M
3300022176|Ga0212031_1009899Not Available1331Open in IMG/M
3300022176|Ga0212031_1013893All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1184Open in IMG/M
3300022176|Ga0212031_1016030Not Available1125Open in IMG/M
3300022176|Ga0212031_1023003Not Available979Open in IMG/M
3300024262|Ga0210003_1028269All Organisms → Viruses3195Open in IMG/M
3300025543|Ga0208303_1013283Not Available2481Open in IMG/M
3300025646|Ga0208161_1024407Not Available2217Open in IMG/M
3300025646|Ga0208161_1080608Not Available943Open in IMG/M
3300025646|Ga0208161_1153915Not Available570Open in IMG/M
3300025647|Ga0208160_1017063Not Available2349Open in IMG/M
3300025647|Ga0208160_1032265All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1580Open in IMG/M
3300025655|Ga0208795_1021355All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2125Open in IMG/M
3300025769|Ga0208767_1010868All Organisms → Viruses5610Open in IMG/M
3300025769|Ga0208767_1266882Not Available523Open in IMG/M
3300025853|Ga0208645_1203333Not Available699Open in IMG/M
3300025889|Ga0208644_1009341Not Available6839Open in IMG/M
3300025889|Ga0208644_1174854Not Available958Open in IMG/M
3300027917|Ga0209536_100727459Not Available1232Open in IMG/M
3300031963|Ga0315901_10772232Not Available701Open in IMG/M
3300034062|Ga0334995_0181428Not Available1485Open in IMG/M
3300034062|Ga0334995_0625738Not Available620Open in IMG/M
3300034104|Ga0335031_0334026Not Available974Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous52.83%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water10.38%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.66%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.72%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton4.72%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.77%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.83%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.89%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.89%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.89%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.89%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.94%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.94%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.94%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001934Estuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858EnvironmentalOpen in IMG/M
3300001948Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012EnvironmentalOpen in IMG/M
3300001952Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008EnvironmentalOpen in IMG/M
3300002040GS000c - Sargasso Station 3EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008459Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - July 8, 2014 all contigsEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013133 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2EnvironmentalOpen in IMG/M
3300014801Aquatic microbial communities from drinking water treatment system in Nanjing, China - Filtered water - FWEnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020193Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120mEnvironmentalOpen in IMG/M
3300020198Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65mEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022063Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GOS2267_10134413300001934MarineMKMHLIKTNDNVLYEVIHQEPETKQIDAEKLKFKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ*
GOS2228_100349123300001948MarineMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKFKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ*
GOS2224_101993743300001952MarineLSKTRSPKVSQVMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEGNLENQ*
GOScombined01_10081577243300002040MarineMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEGNLENQ*
B570J29032_10888500623300002408FreshwaterMKFHLIKTNNDILYEVIHTESDNKIMDIDKMKFKYQCTDVFRKDGKLWFVRLVEEATIIEESL
B570J40625_10058610033300002835FreshwaterMKFHLIKTNNDILYEVIHTESDNKIMDIDKMKFKYQCTDVFRKDGKLWFVRLVEEATIIEESLEN*
Ga0070749_1003237433300006802AqueousMKLHLIKTNNDTLYEVIHQEPETKQFDIDKMKLKHHCTDVFRKDGKFWFVRLIEEAQILEESLDN*
Ga0070749_1005886943300006802AqueousMKMHLIKTNDDILYQVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEEAQIIEENLDN*
Ga0070749_1013635943300006802AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEEAQVIEENLEKH*
Ga0070749_1014387313300006802AqueousMKMHLVKTNDDVLYQVIHQEPETKQLDLEVLKRKYLCGTVFRKDGMYWFVRKIEEAQVIED*
Ga0070749_1018400943300006802AqueousMKMHLIKTNNDTLYEVIHQEPETKQFDIDKMKIKYHCTDVFRKDGKFWFVRLVEEAQILEESLDN*
Ga0070749_1020015423300006802AqueousMKMHLIKTKDDTLYEVIHQEVETKQIDSEKMRIKYHCTNVFRNNGQYWFVRKIEEAQVIEENEETQ*
Ga0070749_1022388723300006802AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKHYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ*
Ga0070749_1026569623300006802AqueousMKMHLIKTNNDILYQVIHQEPETKQIDTEKMRIKHHCTDVFRKDGMYWFVRLIEEAQIIEESLDN*
Ga0070749_1026941123300006802AqueousMKMHLIKTNNDILYQVIHQEPETKVFNTEKMRIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN*
Ga0070749_1065783223300006802AqueousMKMHLIKTKDDTLYEVIHQEVETKQIDSEKMRIKYHCTDVFRNNGQYWFVRKIEEAQVIEENLEKQ*
Ga0070754_10001997193300006810AqueousMKMHLIKTNNDILYQIIHQEPETKQIDTEKMRIKHHCTDVFRKDGMYWFVRLIEEAQIIEESLDN*
Ga0070754_1006485533300006810AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ*
Ga0070746_10001636193300006919AqueousMKMHLIKTNDDTLYQVLHQEPETKQLDLEMMKRKYLCGTVFRKDGMYWFVRKIKEAQVIEENLENE*
Ga0070746_1007397123300006919AqueousMNMHLIKTNDDVLYQVIHQEPETKPLDLELLKRKYLCNTVFRKDGLYWFVRKIEEAQIVEENLEE*
Ga0070746_1018107623300006919AqueousMNMHLIKTNDDVLYQVIHQEPETKQLDLEMLKNKYLCGTVFRKDGLYWFVRKIEEAQVVDENLENQ*
Ga0070746_1033921523300006919AqueousMKMHLIKTNNDILYQVIHQEPETKIFDTEKMKIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN*
Ga0070745_103892813300007344AqueousMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ*
Ga0070752_139143723300007345AqueousMKMHLIKTNDDTLYQVLHQEPETKQLDLEMLKNKYLCGTVFRKDGLYWFVRKIEEAQVVDENLENQ*
Ga0070753_116790833300007346AqueousMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEENLE
Ga0099851_100610943300007538AqueousMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEGNLENQ*
Ga0099851_100669043300007538AqueousMHLIKTNDDVLYEVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEEAQVIEENLEKH*
Ga0099851_101742043300007538AqueousMKMHLIKTNNDILYQVIHQEPETKVFDTEKMKIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN*
Ga0099851_102353543300007538AqueousSPKVSQVMKMHLIKTNDDILYQVIHQEPETKQIDVEKLKIKHLCNTVFRKDGVYWFVRKIEEAQIIEENLDN*
Ga0099851_105628733300007538AqueousMKMHLIKTNDDTMYQVIHQEPETKIIDVEKAKIKHQCSHVFRKDGLYWFVRIVEEAQVIEENLEN*
Ga0099851_106860043300007538AqueousMKMHLIKTNDDVLYQVIHQEPETKPLDLELLKNKYLCNTVFRKDGLIWFVRKIEEAQVIEENLEN*
Ga0099847_107324123300007540AqueousMHLIKTNDDVLYQVIHQEPETKPLDLELLKRKYLCNTVFRKDGLYWFVRKIEEAQIVEENLEE*
Ga0099848_105936923300007541AqueousMKMHLIKTNNDVLYQVLHQEPETKQIDTEKMRIKHQCTDVFRKDGMYWFVRLIQEAQIIEENLEN*
Ga0099848_130826413300007541AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVI
Ga0099848_132414013300007541AqueousMKIHIIKTNDDTLYHVIHQEPEVKQLDLEKTKIKHQCTHVFRKDGLYWFVRLIEEAQLVNDSLEN*
Ga0099846_101837143300007542AqueousMKMHLIKTNDDTMYQVIHQEPETKIIDVEKAKIKHQCSHVFRKDGLYWFVRIVEEAQVIKENLEN*
Ga0099846_104577843300007542AqueousMKIHIIKTNDDTLYHVIHQEPEVKQLDLEKTKIKHQCTHVFRKDGLYWFVRLIEEAQVIEENLEN*
Ga0099846_108836343300007542AqueousKTNDDVLYEVIHQEPETKQIDVEFMKRKHLCSTVFRKDGLYWFVRKIEEAQVIEKNLENQ
Ga0099846_109827133300007542AqueousMHLIKTNNDTLYEVIHQEPETKQFDIDKMKIKYHCTDVFRKDGKFWFVRLVEEAQILEESLDN*
Ga0099846_111821423300007542AqueousMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIKEAQVIEENLEKQ*
Ga0099850_116748723300007960AqueousMHLIKTNDDVLYEVIHQESETKPIDVEFMKRKHLCSTVFRKDGLYWFVRKIEEAQVIEENLENQ*
Ga0099850_130892323300007960AqueousMHLIKTNDDVLYQVIHQESETKQIDVEKIRIKHHCTNVFRKDGLYWFVRLVEEAQIVEENLEEQ*
Ga0114346_105354413300008113Freshwater, PlanktonMKMHLIKTKDDVMYQVIHQELETKILDVEKAKIKHQCSHVLRKDGWLWFVRIIEEAQ
Ga0114355_122342523300008120Freshwater, PlanktonMKMHLIKTKDDVMYQVIHQELETKILDVEKAKIKHQCSHVLRKDGWLWFVRIIEEAQVIEDNLEN*
Ga0114364_100955753300008267Freshwater, PlanktonMLYEVIHTEPETKTMDIDRMKFKYQCTDVFRKDGKLWFVRLVEEATIIEESLED*
Ga0114364_101588043300008267Freshwater, PlanktonMHLIKTKDDVMYQVIHQELETKILDVEKAKIKHQCSHVLRKDGWLWFVRIIEEAQVIEDNLEN*
Ga0114364_112677723300008267Freshwater, PlanktonMKIHIIKTNDDTLYHVIHQEPEVKQLDLEKTKIKHQCTHVFRKDGLYWFVRLIEEAQHQFRQRIH*
Ga0114865_115128723300008459Freshwater LakeMKIHIIKTNDDTLYHVIHQEPEVKQLDLEKTKIKHQCTHVFRKDGLYWFVRLIEEAQ
Ga0102960_104248713300009000Pond WaterHLIKTNDDTLYQVIHQEPESKQLDLEMIKRKYLCGSVFRKDGLYWFVRKIEEAQIIEESLDN*
Ga0102960_135381823300009000Pond WaterMKMHLIKTNNDIVYQVIHQEPETKQIDTEKMRIKHHCTDVFRKDGMYWFVRLIEEAQIIE
Ga0102963_145441423300009001Pond WaterMHLIKTNDDTLYQVLHQEPETKQLDLEMMKRKYLCGTVFRKDGMYWFVRKIKEAQVIEENLENE*
Ga0114918_10005031123300009149Deep SubsurfaceMKMHLIKTNNDILYQVIHQEPETKVFDTEKMRIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN*
(restricted) Ga0172367_1003472633300013126FreshwaterMHLIKTNDDVLYHVLHQEPETKPLDIEKTKIKHQCTHVFRKDGLYWFVRLIEEAQLTEENLES*
(restricted) Ga0172363_1079066323300013130SedimentMKMHLIKTNDDVLYHVLHQEPETKPLDIEKTKIKHQCTHVFRKDGLYWFVRLIEEAQLTEENLEN*
(restricted) Ga0172372_1062584913300013132FreshwaterMKMHLIKTNDDVLYHVLHQEPETKPLDIEKTKIKHQCTHVFRKDGLYWFVRLIEEAQLIEENLES*
(restricted) Ga0172362_1036830923300013133SedimentMKMHLIKTNDDVLYHVLHQEPETKPLDIEKTKIKHQCTHVFRKDGLYWFVRLIEEAQLTEENLES*
Ga0119946_100780623300014801AquaticMHLIKTNDDVMYQVLHQEPETKPIDVEKAKIKHQCSHVFRKDGLYWFVRIIEEAEIIEDSLENQ*
Ga0181580_1036798143300017956Salt MarshLIKTNNDILYQVIHQEPETKVFDTEKMKIKHQCTDVFRKDVMYWFVRLIEEAQIIEESLD
Ga0180437_1077847013300017963Hypersaline Lake SedimentMNIHLIKTNDDTLYQVIHQEPESKQLDLEMIKRKYLCGSVFRKDGLYWFVRKIEEAQIIEESLDN
Ga0181576_1051308423300017985Salt MarshMKLHLIKTNNDTLYEVIHQEPETKQFDIDKMKLKHHCTDVFRKDGKFWFVRLIEEAQILEESLDN
Ga0180432_1075252123300017989Hypersaline Lake SedimentMNIHLIKTNDDTLYQVIHQEPESKQLDLEMIKRKYLCGSVFRKDGLYWFVRKIEEAQIIE
Ga0181568_1125639413300018428Salt MarshMKLHLIKTNNDTLYEVIHQEPETKQFDIDKMKLKHHCTDVFRKDGKFWFVRLVEEAQILEESLDN
Ga0211735_1140798823300020162FreshwaterMKFHLIKTNNDMLYEVIHTEPETKTMDIDRMKFKYQCTDIFRKDGKLWFVRLVEEATIIEESLEN
Ga0211729_1060894823300020172FreshwaterMKFHLIKTNNDMLYEVIHTEPETKTMDIDRMKFKYQCTDVFRKDGKLWFVRLVEEATIIEESLEN
Ga0194115_10013178143300020183Freshwater LakeMDLIKTNDDVLYEVIRKIPETKAIDVELFKNTSNSTHVFRKDGLYWFVRIIEEAQVINSNLEN
Ga0194115_1005670633300020183Freshwater LakeMKFHLIKTNDDVLYEVIHTFPETKVIDIDKMKIKYQCTDVFRKDNKLWFVRLIEEAQVIEESLEN
Ga0194131_1003022473300020193Freshwater LakeMKMDLIKTNDDVLYEVIKKIPETKAIDVELFKNTSNSTHVFRKDGFYWFVRIIEEAQVIDSNLVN
Ga0194120_1030648623300020198Freshwater LakeMKMDLIKTNDDVLYEVIRKIPETKAIDVELFKNTSNSTHVFRKDGFYWFVRIIEEAQVIDSNLVN
Ga0194119_1047975723300020220Freshwater LakeMKMDLIKTNDDVLYEVIKKIPETKAIDVELFKNTSNSTHVFRKDGFYWFVRIIEEAQVINSNLEN
Ga0222716_1018645643300021959Estuarine WaterMHLIKTNDDILYQVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEEAQIIEENLDN
Ga0222716_1020659513300021959Estuarine WaterDDTLYQVIHQEPESKQLDLEMIKRKYLCGSVFRKDGLYWFVRKIEEAQIIEESLDN
Ga0222716_1059436923300021959Estuarine WaterMKMHLIKTNNDILYQVIHQEPETKQIDTEKMRIKHHCTDVFRKDGMYWFVRLIEEAQIIEESLDN
Ga0222715_1010560733300021960Estuarine WaterMKLHLIKTNNDTLYEVIHQEPETKQFDIDKMKLKYHCTDVFRKDGKFWFVRLVEEAQILEESLDN
Ga0222715_1014880043300021960Estuarine WaterMKMHLIKTNDDILYQVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEEAQIIEENLDN
Ga0222715_1029831723300021960Estuarine WaterMKLHLIKTKDDTLYEVIHQEVETKQIDSEKMRIKYHCTDVFRNNGQYWFVRKIEEAQIIEENLEKQ
Ga0222714_1017351723300021961Estuarine WaterMKMHLIKTKNDSLYEVIHQIPEHIQMDVEKQRIKYQCTDVFRNNGQYWFVRLIEDAEVLEESLATQ
Ga0222714_1032843333300021961Estuarine WaterMKFHLIKTNNDMLYEVIHTESDNKVMDIDRMKFKYQCTDVFRKDGKLWFVRLIEEATI
Ga0222714_1060229513300021961Estuarine WaterMKMHLIKTNNDIVYQVIHQEPETKQIDTEKMRIKHHCTDVFRKDGMYWFVRLIEE
Ga0222713_1010205523300021962Estuarine WaterMKFHLIKTNNDMLYEVIHTESDNKVMDIDRMKFKYQCTDVFRKDGKLWFVRLIEEATIIEESLEN
Ga0222713_1056543413300021962Estuarine WaterMKMHLIKTKNDSLYEVIHQIPEHIQMDVEKQRIKYQCTDVFRNNGQYWFVRLIEDAEV
Ga0212030_101105723300022053AqueousMHLIKTNDDVLYQVIHQEPETKPLDLELLKRKYLCNTVFRKDGLYWFVRKIEEAQIVEENLEE
Ga0212029_100199923300022063AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDDQYWFVRKIEEAQVIEGNLENQ
Ga0212021_101533643300022068AqueousMKMHLVKTNDDVLYQVIHQEPETKQLDLEVLKRKYLCGTVFRKDGMYWFVRKIEEAQVIE
Ga0212020_104029633300022167AqueousKTRSPKVSQVMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ
Ga0212031_100989913300022176AqueousMHLIKTNDDILYQVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEE
Ga0212031_101389323300022176AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEGNLENQ
Ga0212031_101603023300022176AqueousMKMHLIKTNDDVLYQVIHQEPETKPLDLELLKNKYLCNTVFRKDGLIWFVRKIEEAQVIEENLEN
Ga0212031_102300323300022176AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDVEKLKIKHLCNTVFRKDGLYWFVRKIEEAQVIEENLEKH
Ga0210003_102826943300024262Deep SubsurfaceMKMHLIKTNNDILYQVIHQEPETKVFDTEKMRIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN
Ga0208303_101328353300025543AqueousMKMHLIKTNNDILYQVIHQEPETKVFDTEKMKIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN
Ga0208161_102440723300025646AqueousMKMHLIKTNDDTMYQVIHQEPETKIIDVEKAKIKHQCSHVFRKDGLYWFVRIVEEAQVIEENLEN
Ga0208161_108060813300025646AqueousMKMHLIKTNDDVLYEVIHQESETKPIDVEFMKRKHLCSTVFRKDGLYWFVRKIEEAQVIEENLENQ
Ga0208161_115391523300025646AqueousMKMHLIKTNNDILYQVIHQEPETKIFDTEKMKIKHQCTDVFRKDGMYWFVRLIEEAQIIEESLDN
Ga0208160_101706323300025647AqueousMHLIKTNDDTMYQVIHQEPETKIIDVEKAKIKHQCSHVFRKDGLYWFVRIVEEAQVIKENLEN
Ga0208160_103226523300025647AqueousMKMHLIKTNDDVLYEVIHQEPETKQIDAEKLKIKYYCTDVFRKDGQYWFVRKIEEAQVIEENLENQ
Ga0208795_102135513300025655AqueousMKMHLIKTNDDVLYQVIHQEPETKPLDLELLKNKYLCNTVFRKDGLIWFVRKIE
Ga0208767_1010868103300025769AqueousMKMHLIKTNDDTLYQVLHQEPETKQLDLEMMKRKYLCGTVFRKDGMYWFVRKIKEAQVIEENLENE
Ga0208767_126688223300025769AqueousMNMHLIKTNDDVLYQVIHQEPETKQLDLEMLKNKYLCGTVFRKDGLYWFVRKIEEAQVVDENLENQ
Ga0208645_120333323300025853AqueousMKMHLIKTNNDILYQVIHQEPETKQIDTEKMRIKHHCTDVFRKDGMYWFVRLIEEAQIIEESLD
Ga0208644_1009341123300025889AqueousMKMHLIKTKDDTLYEVIHQEVETKQIDSEKMRIKYHCTDVFRNNGQYWFVRKIEEAQVIEENEETQ
Ga0208644_117485443300025889AqueousMKMHLIKTKDDTLYEVIHQEVETKQIDSEKMRIKYHCTDVFRNNGQYWFVRKIEEAQVIEENLEKQ
Ga0209536_10072745933300027917Marine SedimentMNMHLIKTNDDVLYQVIHQEPETKPLDLELLKRKYLCNTVFRKDGLYWFVRKIEEAQIVEENLEE
Ga0315901_1077223213300031963FreshwaterMKFHLIKTNNDMLYEVIHTEPETKTMDIDRMKFKYQCTDVFRKDGKLWFVRLVEEATIIEESLED
Ga0334995_0181428_1127_13243300034062FreshwaterMKMHLIKTNDDVMYQVLHQEPETKSIDVEKMKIKHQCSHVFRKDGLYWFVRIVEEAQVIEENLEN
Ga0334995_0625738_472_6183300034062FreshwaterMKFHLIKTNNDILYEVIHTESDNKIMDIDKMKFKYQCTDVFRKDGKLWF
Ga0335031_0334026_598_7953300034104FreshwaterMKFHLIKTNNDILYEVIHTESDNKIMDIDKMKFKYQCTDVFRKDGKLWFVRLVEEATIIEESLEN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.