Metagenome Family F093549

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093549
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	64 residues
Representative Sequence	MKSIDKAVELSAQTTRNVFKRNLTRFAAALLAALAGLVAVPNAALAAPHQHHDQVPGFYRLKVGD
Number of Associated Samples	82
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.06 %
% of genes near scaffold ends (potentially truncated)	98.11 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.245 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.019 % of family members)
Environment Ontology (ENVO)	Unclassified (32.075 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.39% β-sheet: 0.00% Coil/Unstructured: 51.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01638	HxlR	29.25
PF13561	adh_short_C2	10.38
PF12697	Abhydrolase_6	8.49
PF00106	adh_short	2.83
PF00158	Sigma54_activat	1.89
PF02954	HTH_8	1.89
PF03466	LysR_substrate	1.89
PF08240	ADH_N	0.94
PF07730	HisKA_3	0.94
PF02566	OsmC	0.94
PF01047	MarR	0.94
PF07494	Reg_prop	0.94
PF08281	Sigma70_r4_2	0.94
PF00753	Lactamase_B	0.94
PF12867	DinB_2	0.94
PF00561	Abhydrolase_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	29.25
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.94
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.94
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	0.94
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.94
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.94
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.94 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.94 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.94 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.94 %
Cupriavidus basilensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	0.94 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1002714	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300001593\|JGI12635J15846_10272302	Not Available	1074	Open in IMG/M
3300001593\|JGI12635J15846_10836056	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300002914\|JGI25617J43924_10138243	Not Available	846	Open in IMG/M
3300004080\|Ga0062385_10969862	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005178\|Ga0066688_10209818	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300005295\|Ga0065707_10770882	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300005436\|Ga0070713_101141369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	754	Open in IMG/M
3300005468\|Ga0070707_100562441	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300005468\|Ga0070707_101888523	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005468\|Ga0070707_101988544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	549	Open in IMG/M
3300005471\|Ga0070698_101639008	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005471\|Ga0070698_101981144	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300005552\|Ga0066701_10042086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2458	Open in IMG/M
3300005921\|Ga0070766_10310699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1015	Open in IMG/M
3300006059\|Ga0075017_101668371	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300006800\|Ga0066660_10278522	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300007076\|Ga0075435_100434955	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300007265\|Ga0099794_10635866	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300007788\|Ga0099795_10525874	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300009012\|Ga0066710_104410921	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300009038\|Ga0099829_10266242	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300009038\|Ga0099829_11451715	Not Available	567	Open in IMG/M
3300009088\|Ga0099830_10672904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300009088\|Ga0099830_11852977	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300009089\|Ga0099828_10387539	Not Available	1260	Open in IMG/M
3300009090\|Ga0099827_10120552	All Organisms → cellular organisms → Bacteria	2112	Open in IMG/M
3300009545\|Ga0105237_12667482	Not Available	510	Open in IMG/M
3300009553\|Ga0105249_12317632	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300011269\|Ga0137392_11545217	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300011270\|Ga0137391_10151228	All Organisms → cellular organisms → Bacteria	2022	Open in IMG/M
3300011270\|Ga0137391_11243273	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300011270\|Ga0137391_11308844	Not Available	572	Open in IMG/M
3300011271\|Ga0137393_11068497	Not Available	686	Open in IMG/M
3300011271\|Ga0137393_11637079	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012096\|Ga0137389_10332871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1290	Open in IMG/M
3300012096\|Ga0137389_11069876	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300012205\|Ga0137362_11605266	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012208\|Ga0137376_10936827	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300012210\|Ga0137378_11242155	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012361\|Ga0137360_11483612	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012361\|Ga0137360_11521808	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012363\|Ga0137390_10050334	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4041	Open in IMG/M
3300012925\|Ga0137419_11092889	Not Available	664	Open in IMG/M
3300012927\|Ga0137416_10567956	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300012929\|Ga0137404_11721350	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300012929\|Ga0137404_12302287	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300012944\|Ga0137410_11500271	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300015054\|Ga0137420_1301928	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300015054\|Ga0137420_1329662	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300019789\|Ga0137408_1371646	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300020579\|Ga0210407_10315375	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300020581\|Ga0210399_10518133	Not Available	990	Open in IMG/M
3300021168\|Ga0210406_10108487	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300021178\|Ga0210408_10540332	Not Available	925	Open in IMG/M
3300021178\|Ga0210408_11460139	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300021180\|Ga0210396_10234634	All Organisms → cellular organisms → Bacteria	1633	Open in IMG/M
3300021181\|Ga0210388_11793728	Not Available	506	Open in IMG/M
3300021407\|Ga0210383_10236688	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300021420\|Ga0210394_11202901	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	650	Open in IMG/M
3300021420\|Ga0210394_11217417	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300021432\|Ga0210384_10380246	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300021432\|Ga0210384_10447168	Not Available	1164	Open in IMG/M
3300021433\|Ga0210391_10625746	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300021478\|Ga0210402_11229706	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300021479\|Ga0210410_11293471	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300021559\|Ga0210409_10355966	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300021559\|Ga0210409_11257031	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300021559\|Ga0210409_11515785	Not Available	546	Open in IMG/M
3300021559\|Ga0210409_11622341	Not Available	523	Open in IMG/M
3300025910\|Ga0207684_11087479	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300025922\|Ga0207646_11686719	Not Available	545	Open in IMG/M
3300025922\|Ga0207646_11744433	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300026304\|Ga0209240_1088980	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300026358\|Ga0257166_1025072	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300026475\|Ga0257147_1036737	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300026482\|Ga0257172_1020049	Not Available	1170	Open in IMG/M
3300026497\|Ga0257164_1058120	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300026551\|Ga0209648_10116996	All Organisms → cellular organisms → Bacteria	2158	Open in IMG/M
3300026555\|Ga0179593_1015097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	2395	Open in IMG/M
3300027061\|Ga0209729_1022719	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300027109\|Ga0208603_1020784	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300027172\|Ga0208098_1017088	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300027512\|Ga0209179_1131728	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300027562\|Ga0209735_1001675	All Organisms → cellular organisms → Bacteria	3820	Open in IMG/M
3300027643\|Ga0209076_1051699	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300027645\|Ga0209117_1142338	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300027669\|Ga0208981_1055509	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300027727\|Ga0209328_10046774	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300027855\|Ga0209693_10577897	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027875\|Ga0209283_10558974	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300027879\|Ga0209169_10689772	Not Available	530	Open in IMG/M
3300028536\|Ga0137415_10248623	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
3300028906\|Ga0308309_10127261	All Organisms → cellular organisms → Bacteria → Acidobacteria	2017	Open in IMG/M
3300031231\|Ga0170824_101923338	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031231\|Ga0170824_125184189	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300031708\|Ga0310686_102663162	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300031708\|Ga0310686_109212676	Not Available	528	Open in IMG/M
3300031720\|Ga0307469_10936849	Not Available	805	Open in IMG/M
3300031753\|Ga0307477_10491917	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300031754\|Ga0307475_11543947	Not Available	508	Open in IMG/M
3300031820\|Ga0307473_10250449	Not Available	1086	Open in IMG/M
3300031962\|Ga0307479_10273150	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300031962\|Ga0307479_11809794	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300032180\|Ga0307471_100808821	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300032180\|Ga0307471_101563510	Not Available	816	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	2.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.28%
Plants	Host-Associated → Plants	2.83%
Aquatic	Environmental → Aquatic	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.83%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.58%
Loam	Environmental → Terrestrial → Soil → Loam	21.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.49%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10027141	3300001089	Forest Soil	MKSIDKAVELSAQTTRNVFKRNLTRFAAVLLAALAIFVAGPNAALDAAPQHRDQVP
JGI12635J15846_102723021	3300001593	Forest Soil	MKSKDKAVELSAQTTRNVFKRNLLRFAAALMAVLASFVAGPNAALDAAPQHHDQVPG
JGI12635J15846_108360561	3300001593	Forest Soil	MKGIDKAVEVSAQRMRNVVKRNSVRFAAALLAALLIFVAGPNATLAAAAQHHDQVPGFYRLKVGDLELTALFD
JGI25617J43924_101382431	3300002914	Grasslands Soil	MKSLNKAVEISPPKMRIVLKRNSMRFAAALLXALASFVTAPNAALAAAAQHHDQVPGFYRTRVGDLEV
Ga0062385_109698621	3300004080	Bog Forest Soil	MKSIDRVVEVSAQTMRNVLKRNSMRFAAALLVALASFVAVPNATLAAGPQHHDQVPGFYRLRVGDLEVTALF
Ga0066688_102098183	3300005178	Soil	MKSINKAVKISAQTMRNVLKRSSVRFAAALLMALASLVAGPNAALAAAPQHHDQAPGFYRLKVGD
Ga0065707_107708821	3300005295	Switchgrass Rhizosphere	VPLATIHVLPRNRFLLLTQLRIAVALLAALTSFVAGANAEWPAEPQHHDQVPGFYRLKVGDLEVTALF
Ga0070713_1011413691	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKSIDKAVELSPQATRNVLNRNSIRFAVALLAALTILVAIPTTSLAAPPQRHDQVPGFYRLKVGDLEV
Ga0070707_1005624412	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKSIDETVELSAQMTRSVFKINLTRFAVVLLAVLASFVAVPNAALAAPPQHRDQVPGFYRLKVGDLEVTAL
Ga0070707_1018885232	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKAIDRAVELSARATRNVLRRNLTRFAAALLAALVSFVAVPNAALAAPPQHHDQVPGFYRLKVGDL
Ga0070707_1019885442	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKTIDKAVEVSAQTTRNVLKRNSMRLAAVLLAALVSFVPVPNGALAAAPQHRDQVPGFYRLKVGDL
Ga0070698_1016390082	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKNLNKAVEISAPAMRNVLKRNSIRFAAALLISLTSFVTPPNAALGGAPQHHDQ
Ga0070698_1019811442	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKSIDKAVELSAQTTRNVHKRNSMPFAAVLLAALAISVAGPNAAPAATPQHHDQQPGFYRLKV
Ga0066701_100420865	3300005552	Soil	MKSINKAVKISAQTMRNVLKRSSVRFAAALLMALAGPVAGPNAALAAAPQHHDQAPGFYRLKV
Ga0070766_103106991	3300005921	Soil	MKNLNKAVEISAPTMRSVLKRSPMRFAAALLVALASFITAPNAGLAAAAQHHDQVPGFYRLKVGDLEVTA
Ga0075017_1016683711	3300006059	Watersheds	MKAIDRAVELSARATRNVLMRNLTRFAAALLAVLVSFVAVPNAALAAPPQHHDQVPGFFRLKVGDLE
Ga0066660_102785223	3300006800	Soil	MKSINKAVEMSGQTAKNVLKRNSMRFAAALLIALASFVTAPNATLAAAAQHHDQVPGFYRLKV
Ga0075435_1004349551	3300007076	Populus Rhizosphere	MKSINKAVKISALTLRNVLKTNSVRFAAALLVALGSFVAVPNATLAAAPQHHDQQP
Ga0099794_106358661	3300007265	Vadose Zone Soil	MKSIDKAVELSAPTTRNVFKRNLTRFAAVLLAALAGLVAVPNAALAAPHQHHDQVPGFYR
Ga0099795_105258742	3300007788	Vadose Zone Soil	MKSINKAVKISAQTMRNVLKRSSVRFAAALLMALASLVAGPNAALAAAPQHHDQAPGFYRLKVGDLEV
Ga0066710_1044109211	3300009012	Grasslands Soil	MKSMDKAVELSAQTTRNVFKRNLTRFAAALLAALAGLVAVPNAALADPPQHRDQVPGFYRLKVG
Ga0099829_102662421	3300009038	Vadose Zone Soil	MKSIDKAVEVSAQTTRNVLKRNSIRFAAALLALLASFVAGPNAVLADAPQHHDQAPGFYRLKV
Ga0099829_114517151	3300009038	Vadose Zone Soil	MKSINKAVEISAHTMKDVLKRNSLRFATALLVALAIFVAAPNAALAAGPQHHDQVPGF
Ga0099830_106729043	3300009088	Vadose Zone Soil	MKSIDKAVEVCAQTTRSVLKRNSMCFAAVLLAALAIFVAGPNAALASAPQHHDQVPGFY
Ga0099830_118529771	3300009088	Vadose Zone Soil	MKSIDKAVKLSAQTTRNVFKRNLTRFAVVLFAALAGLVAVPNAALAAPHQHHDQVPGFYRLKVGDLEVTA
Ga0099828_103875392	3300009089	Vadose Zone Soil	MKSINKAVEISPPAMRNVLKRNSMRFAAALLVALTSFVTAPNAALAGAPQHHDQAPGFYRLKVGD
Ga0099827_101205521	3300009090	Vadose Zone Soil	MKSINKAVEISAPTMRNVLKRNSMRFAAALLVALASFVTAPNAALAGAPQHHDQAPGFYRLK
Ga0105237_126674822	3300009545	Corn Rhizosphere	MKSINKAVEISAPTMRSVLKGNSMRFAAALLVALASFVTAPNTALAAAAQHRDQVPGFYRVKVGD
Ga0105249_123176321	3300009553	Switchgrass Rhizosphere	MKSINKAVEISAPTMRSVLKGNSMRFAAALLVALASFVTAPNTALAAAAQHRDQVPG
Ga0137392_115452171	3300011269	Vadose Zone Soil	MKSIDKAVELSAPTTRNVFKRNLTRSAAVLLAALAGLVAVPNAALAAPHQHHDQVPGFYRLKV
Ga0137391_101512281	3300011270	Vadose Zone Soil	MKSIDKAVEVCAQTTRSVLKRNSMCFAAVLLAALAIFVAGPNAALASAPQHHDQVPGFYRLKVGDLE
Ga0137391_112432731	3300011270	Vadose Zone Soil	MKSMNKAVEISAPTMRNVFKRNLTRFAAVLLAALAGLVAGPNAALDAAPQHRDQVPG
Ga0137391_113088441	3300011270	Vadose Zone Soil	MKSINKALEISAHTMRNVLKRNSIRFAAALLVALASFVAVPKATLAAGPQHHDQVPGFYRLKV
Ga0137393_110684972	3300011271	Vadose Zone Soil	MKSIDKAVEVSPQRMRNVVKRNSVRLAAVLLMALVSLGVSPNAALAAAAQHHDQVPGFYRLKVGDL
Ga0137393_116370792	3300011271	Vadose Zone Soil	MKSIDKAVELSAPTTRNVFKRNLTRSAAVLLAALAGLVAVPNAALAAPHQHHDQVPGFYRLKVGD
Ga0137389_103328711	3300012096	Vadose Zone Soil	MKSIDKAVEVCAQTTRSVLKRNSMCFAAVLLAALAIFVAGPNAALASAPQHHDQVPGFYRLKVGD
Ga0137389_110698761	3300012096	Vadose Zone Soil	MKSIDKAVELSAQTTRNVFKRNLTRFAAALLAVLASLVAGPNAALAAPHQHHDQVPGFYRLKVGDLEVTA
Ga0137362_116052662	3300012205	Vadose Zone Soil	MKSINKTVEISAQTMRNVLKRNSIRFAAALLVGLASFVSAPNATLAAGPQHHDQVPGFYRLKVGDLE
Ga0137376_109368271	3300012208	Vadose Zone Soil	MKSIDKAVELSAQPTRNVFKRNLTRFAVVLFAALDGLVAVPNAALAAPHQHHDQVPGFYRLKVGDLEVT
Ga0137378_112421552	3300012210	Vadose Zone Soil	MKSIDKAVELSAQTTRNVFKRNSMRFVAPLMAVLAGIVAGPNAALAAPHQHHDQV
Ga0137360_114836122	3300012361	Vadose Zone Soil	MKSIDKAVELSAPTTRNVFKRNLTRSAAVLLAALAGLVAVPNAALAAPHQHHDQVPGFYRLKVGDLEV
Ga0137360_115218081	3300012361	Vadose Zone Soil	MKSINKAVEISAPTMRSVLKRNSMRFAAVLLVALASSIIAPNTALAVAAQHHDQ
Ga0137390_100503341	3300012363	Vadose Zone Soil	MKSINKAVKISAQTMRNILKRNSIRFAAALPAALVIFVASPNAALAAGAQHHDQVPGFYRLKVGDLEVTA
Ga0137419_110928891	3300012925	Vadose Zone Soil	MNSIDKAVGLSAQTTRNVFKRNLTRFAAVLLAALAGLVAVPNAALAAPQQHHDQV
Ga0137416_105679561	3300012927	Vadose Zone Soil	MKSINKALEISAHTMRNVLKRNSVRFAAALLVALASFVAAPNAALAAEHHDQVPGFYRLKVG
Ga0137404_117213501	3300012929	Vadose Zone Soil	MKSIDKAVELSAQTTRNVFKRNSIRFVTALMAVLASFVAGPNAAPADAPQHHDQQPGFYRLKVGDLEVTALYD
Ga0137404_123022872	3300012929	Vadose Zone Soil	MKAIVKSGGLPAQMTRSALKKTSISFAAVLLALLATFVAGPKAAMAATPQHHDQQPGFYRLKVGDLEVT
Ga0137410_115002711	3300012944	Vadose Zone Soil	MKSMDKAVELSAPTTRIVFKKDLTRFAAVLLAALAGLVAVRNAAPAAAPEHHDQVPGFYRLKVGDLEVTA
Ga0137420_13019281	3300015054	Vadose Zone Soil	MKSIGKAVELSAQTTRNVFKRNLTRFAAVLLAALASLVAGPNAAVADAPQHHDQVPGFYRLESRRPRSD
Ga0137420_13296622	3300015054	Vadose Zone Soil	MKGIDKAVEVSAETMKNVVKRNSMRFAAVLLIALASLMASPNAALAASPQHHDQVRASTA
Ga0137408_13716461	3300019789	Vadose Zone Soil	MKSIDKAVELSAQMTRNVFKRNLTRFAAVLLAALAGLVAVPNAALAAPQQHHDQVPGFYRVKVGD
Ga0210407_103153753	3300020579	Soil	MKSINKALKISAQTMRNVLKGNSISFAAAVLTALASFVAVPNAALAAAPQHHDQQPGFYRVK
Ga0210399_105181333	3300020581	Soil	MKSIGKAVELSAQTTRNFSGRNLTRFVAVLLTVLGSLVAGLSAAVADAPQHHDQVPGFYR
Ga0210406_101084875	3300021168	Soil	MKCTTNAVEVSAQAMRNVGTRNLTRFAAVLLVALASLCVGPNAAVAAAARQHDQVPGFYRLKVGDL
Ga0210408_105403322	3300021178	Soil	MPMKSIDKALEASAQTTRNALQRNSIRFAVAVLATLAIFVAGTNAALAVAHQHHDQVPAFYRLKIGDLEV
Ga0210408_114601391	3300021178	Soil	MKRINKTAEISAPNMRNVLKRNSMRFAAALLVTLASFVTAPNAALAGAPQHHDQ
Ga0210396_102346341	3300021180	Soil	MKNLNKAVEISAPTMRSVLKRSPMRFAAALLVALASFITAPNAGLAAAAQHHDQVPGFYRLKVGDLEVT
Ga0210388_117937281	3300021181	Soil	MKSIGKAVELFAQTSRNVFKRNLTRSAAVLLAALAGLVAFPEATVADAPQRHDQAPGFYRLKVGDLE
Ga0210383_102366883	3300021407	Soil	MKSIDKAVELSTQTTRNVFKRNLTRFAAVLLAALASLVAGPNAAVADAPQRHDQVPGFYRLKV
Ga0210394_112029012	3300021420	Soil	MKAIDRAVELSARAARNVLRRNLTRFAAALLAVLASFVAAPNAALAAQPQHHDQVPGFYRLKV
Ga0210394_112174172	3300021420	Soil	MKSIGKAVELSARTTRNVFKRKLTRFAAVLLAALAGLAAVPNAALAAPHQHHDQVPGFYRLKVGDLEVT
Ga0210384_103802463	3300021432	Soil	MKNLNKAVEISAPTMRSVLKRSPMRFAAALLVALASFITAPNAGLAAAAQHHDQV
Ga0210384_104471681	3300021432	Soil	MKSINKAVEISAPTMRNVLNRNSMRFAPALLAALASFVAGPNTATAAATQHHDQAPGFYRLK
Ga0210391_106257461	3300021433	Soil	MKRIDKAAELSAQTTRNLFKRNLMRFAAVLAVLASFVAAPNATLAAVPQHHDQVPGFYRLKVGDLE
Ga0210402_112297061	3300021478	Soil	MKSTDKAEEVAAQTTRNVLKRNSVRFAAVLLAALASFVAAPNAAPATAPQHHDQVPGF
Ga0210410_112934712	3300021479	Soil	MKSMDKAVEVYAQTTRDVLKRNSMRFAAVLLAALAIFVAGPNAALAAAPQHRDQVPGFYRLKVGDL
Ga0210409_103559663	3300021559	Soil	MKSIDKAVKISALTLRNVLKRNSVRFAAALLVALASFVAVPNATLAAGPQHHDQVPGFYRLKVGDLEVTALF
Ga0210409_112570311	3300021559	Soil	MKSVDKAVELSAQTTRNVFKRNLTRFAAVLLAALAGLVAIPNVALAAPHQHHDQAPGFYRVRVGDLE
Ga0210409_115157851	3300021559	Soil	MPMKSIDKALEASAQTTRNALQRNSIRFAVAVLATLAIFVAGTNAALAVAHQHHDQVPAFYRLKIG
Ga0210409_116223412	3300021559	Soil	MPMKSTGKAEEVAAQTTRNVLKRNSVRFAAVLLAALTIFVAGPNPALAAAPQHHDQVPGFYRLKVGDLEVTA
Ga0207684_110874791	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKSIDKAVELSAQTTRNVLKRNSMPFAAVLLAALAISVAGPNAAPAATPQHHDQQPGFYRLKVGDLEVT
Ga0207646_116867191	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKSINKAVEISAPTMRSVLKRNSMRFAAALLVALAIFVTAPNTALAAAAQHHDQVPGFYRVKV
Ga0207646_117444331	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKAIDRAVELSARATRNVLRRNLTRFAAALLAALVSFVAVPNAALAAPPQHHDQVPGFYRLKVGDLEVT
Ga0209240_10889801	3300026304	Grasslands Soil	MKSINKAVEISAHTMRNVLKRNSIRFAAALLVALASFVAAPNAALAAGPQHHDQVPGFYRLK
Ga0257166_10250722	3300026358	Soil	MKSIDKAVELSAQTTRNVFKRNLTRLAAVLLAALAGLVAVPNAPLAAPHQHHDQVPGFYRVK
Ga0257147_10367371	3300026475	Soil	MKSIDKAVELSAQTTRNPLKRNSIRFAGAVLAVLAIFVAVPNAALAAAPEHHD
Ga0257172_10200492	3300026482	Soil	MKSIDKAVELSAQTTRNVFKRNLTRFAAVLLAALAGLVAVPNAALAAPHQHHDQVP
Ga0257164_10581202	3300026497	Soil	MKGIDKAVQVSAQTTRNAFKRNLTRFAAVLLTALASLVAGPNAAVADAPKHHDQVPGFYRLKVGDLEVT
Ga0209648_101169961	3300026551	Grasslands Soil	MKSINKTVKISAQTMRNVLKRNSLRFAAALLAALVIFVASPNAALAAGAQHHDQVPGFYRLKVGDLEVTAL
Ga0179593_10150971	3300026555	Vadose Zone Soil	MKSIDKALELSAQTTRNVFKRNLTRFAAVLLAALAGLLAVPNAALAAPHQRHDQV
Ga0209729_10227191	3300027061	Forest Soil	MKNIDKTLELCAQMTRSNLTRFAVVLLAVLASFVAVPNAALAAPHQHRDQVPGFYRLKVGDLE
Ga0208603_10207841	3300027109	Forest Soil	VKSLNNAVKICAQMMSNVLKRNSVRFAAVLLIALASFVAAPNAALAAPSHHDQVPGFYR
Ga0208098_10170881	3300027172	Forest Soil	RYIPMKSINKAVKISAQTMRNVLKRNSVRFAAALLMALASLVAGPNAALAAAPQHHDQAPGFYRLSSLALTEG
Ga0209179_11317281	3300027512	Vadose Zone Soil	MKSRDKAVELSAQTTRNVFKRNLTRFAAVLLAALAGLVAVPNAALAAAPQHHDQVPGFYR
Ga0209735_10016756	3300027562	Forest Soil	VELSAQTTRNVFKRNLLRFAAALMAVLASFVAGPNAALDAAPQHHDQV
Ga0209076_10516992	3300027643	Vadose Zone Soil	MKSIDKAVELSAQTTRNAFKRNLTRFAAVLLAALAGLVAVPNAALAAPHQHHDQVPGFYRVKVGDLEVPYTMAPAYSIRIG
Ga0209117_11423382	3300027645	Forest Soil	MKSIDKAVEVSAQTTRNVLKRDSLRFAVALLAALASFVGGPNTALGAAPPHHDQAPGFYRLKVG
Ga0208981_10555093	3300027669	Forest Soil	MKSIDKAVELSAQTTRNVFKRNLTRFAAALLAALAGLVAVPNAALAAPHQHHDQVPGFYRLKVGD
Ga0209328_100467742	3300027727	Forest Soil	MKSINKAVKISAQTMRNVLKRNSVRFAAALLVALAGFFVGPNAALVSAAQHHDQVPGFYRLKVGDLEVTA
Ga0209693_105778971	3300027855	Soil	MKSIDKAVELSAQTTRNELKRNSMPFAAVLLAALAISVAGPNAAPAATPQHHDQQPGFYR
Ga0209283_105589742	3300027875	Vadose Zone Soil	MKCINKAVEISAPTMRNVLKRNSMRFAAALLVALANFVTAPNAALAGAPQHHDQAPGF
Ga0209169_106897721	3300027879	Soil	MNTIGKAVELTAQTTRNVFKRNLTRFGAVLLSALSSLVAVPHAAVADAPQHRDQAPGFYRLKVGDLEV
Ga0137415_102486233	3300028536	Vadose Zone Soil	MKGINKEVEISAQTMRNVLKRNSIRFAAALLAALVIFVASPNAALAAAAQHHDQVPGFYRLKVGDLEV
Ga0308309_101272611	3300028906	Soil	MNTIGKAVELCAQTSRNVFKRNLTRFAAVLLAALAGLVAFPDATVADAPQRHDQAP
Ga0170824_1019233381	3300031231	Forest Soil	MKSINKAVEISAPTIRNVLERNSVRFAAALLVALASFVAVPNAALAAGPQHHDQVPGFYRLKVGDLEVT
Ga0170824_1251841892	3300031231	Forest Soil	MKSIDKAVELSSQTTRNVHKRNSIRFAAVLLAALVSFVAAPNAALAASPQHHDQVPGFYR
Ga0310686_1026631622	3300031708	Soil	MKSIDKAVELSTQTTRNVFKRNLTRFAAVLLAALASLVAGPNAAVADAPQHHDQVPGFY
Ga0310686_1092126762	3300031708	Soil	MKSLNQAVEISVPTMRSVVKRNSMRFAAALLVALASFVAVPNATLAAGPQHHDQVPGFYRLRVGDLE
Ga0307469_109368491	3300031720	Hardwood Forest Soil	MKSINKAVKISAQTMRNVLKRNSVRFAGALLLALASFVVSPNAALAAAAEHHDQVPGFYRLKVGDL
Ga0307477_104919171	3300031753	Hardwood Forest Soil	MKSLKQAVEISAPTMRSVLKRNPMRFAAALLVALASFITAPNAGLAAAAQHHDQVPGFYRLKV
Ga0307475_115439471	3300031754	Hardwood Forest Soil	MKSINKAVTISAQTLRNVLKRNSERLAATILVALASFVAVPNATLAAGPQHHDQVPGFYRLKVGDL
Ga0307473_102504491	3300031820	Hardwood Forest Soil	MKSINKAVEISAPTMRNVLKRNSMRFAAVLLAALAVFVAAPGAALAGAPQYHDQAPGFY
Ga0307479_102731501	3300031962	Hardwood Forest Soil	MKSINKAVEISAHTMRNVLKRNSLRFAAALLVALASFVAVPNATLAAGPQHHDQVPGFYRLKV
Ga0307479_118097942	3300031962	Hardwood Forest Soil	MKSIDKAVELAAQTARNVFKRNLTRFAAILLATLAIFGTVPHVALAAPHQHHDQVPGFYRLKVGDLEV
Ga0307471_1008088211	3300032180	Hardwood Forest Soil	MKSIDKAVELAAQTARNVFKRNLTRFAAILLATLAIFGTVPNVALAAPHQHHDQVPGFYRLKVG
Ga0307471_1015635101	3300032180	Hardwood Forest Soil	MKNLNKAVEISAPTMRSVLKRSPMRFAAALLVALASFITAPNAGLAAAAQHHDQVPGFYRLKV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093549

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences