Metagenome / Metatranscriptome Family F093554

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093554
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	70 residues
Representative Sequence	MQVKSFTYQKNVFGTYYKRGLLNLQKMDDHIAKMLSDGWEILTQTSHTGDRRVLRPFAKRDSITVSFRKS
Number of Associated Samples	82
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.68 %
% of genes near scaffold ends (potentially truncated)	16.98 %
% of genes from short scaffolds (< 2000 bps)	74.53 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.491 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (21.698 % of family members)
Environment Ontology (ENVO)	Unclassified (33.019 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.27% β-sheet: 29.59% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
d.205.1.1: GTP cyclohydrolase I feedback regulatory protein, GFRP	d7acca_	7acc	0.71
b.159.1.1: Allene oxide cyclase-like	d2q4ia_	2q4i	0.69
d.110.2.0: GAF domain-like	d3mmha_	3mmh	0.69
d.110.2.1: GAF domain-like	d1mc0a1	1mc0	0.68
d.110.2.0: GAF domain-like	d3rfba_	3rfb	0.67

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00436	SSB	12.26
PF00589	Phage_integrase	2.83
PF03235	DUF262	1.89
PF01863	YgjP-like	1.89
PF13328	HD_4	1.89
PF04851	ResIII	0.94
PF13776	DUF4172	0.94
PF13589	HATPase_c_3	0.94
PF01966	HD	0.94
PF13620	CarboxypepD_reg	0.94
PF04956	TrbC	0.94
PF04335	VirB8	0.94
PF01867	Cas_Cas1	0.94
PF13175	AAA_15	0.94
PF13413	HTH_25	0.94
PF13271	DUF4062	0.94
PF02321	OEP	0.94
PF03852	Vsr	0.94
PF16565	MIT_C	0.94
PF07719	TPR_2	0.94
PF13683	rve_3	0.94
PF00437	T2SSE	0.94
PF05101	VirB3	0.94
PF12950	TaqI_C	0.94
PF13676	TIR_2	0.94
PF11867	DUF3387	0.94
PF05973	Gp49	0.94
PF01266	DAO	0.94
PF16793	RepB_primase	0.94
PF01930	Cas_Cas4	0.94
PF00176	SNF2-rel_dom	0.94
PF01935	DUF87	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	12.26
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	12.26
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	1.89
COG1479	DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains	Defense mechanisms [V]	1.89
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.89
COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	Defense mechanisms [V]	0.94
COG1518	CRISPR-Cas system-associated integrase Cas1	Defense mechanisms [V]	0.94
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.94
COG3702	Type IV secretory pathway, VirB3 component	Intracellular trafficking, secretion, and vesicular transport [U]	0.94
COG3727	G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein	Replication, recombination and repair [L]	0.94
COG3736	Type IV secretory pathway, component VirB8	Intracellular trafficking, secretion, and vesicular transport [U]	0.94
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.94
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.66 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	23.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.64 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.83 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.94 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.94 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.94 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.94 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.94 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	0.94 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.64 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	0.94 %
Candidatus Contendobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter	0.94 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.94 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.94 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.94 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.64 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.94 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.94 %
unclassified Candidatus Contendobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → unclassified Candidatus Contendobacter	0.94 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.94 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.94 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.64 %
Granulicella sp. S156	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	0.94 %
Candidatus Contendobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → unclassified Candidatus Contendobacter → Candidatus Contendobacter sp.	0.94 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.94 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.94 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.94 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1002756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2823	Open in IMG/M
3300004092\|Ga0062389_101298011	Not Available	913	Open in IMG/M
3300004479\|Ga0062595_100999745	Not Available	718	Open in IMG/M
3300005167\|Ga0066672_10118362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1635	Open in IMG/M
3300005177\|Ga0066690_10481754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300005178\|Ga0066688_10965536	Not Available	521	Open in IMG/M
3300005529\|Ga0070741_10368331	Not Available	1328	Open in IMG/M
3300005532\|Ga0070739_10319042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300005537\|Ga0070730_10000610	All Organisms → cellular organisms → Bacteria	39582	Open in IMG/M
3300006052\|Ga0075029_100106336	Not Available	1690	Open in IMG/M
3300006162\|Ga0075030_100663711	Not Available	826	Open in IMG/M
3300006797\|Ga0066659_11075571	Not Available	672	Open in IMG/M
3300006806\|Ga0079220_10280520	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017	Open in IMG/M
3300007265\|Ga0099794_10391008	Not Available	726	Open in IMG/M
3300007265\|Ga0099794_10746661	Not Available	522	Open in IMG/M
3300009088\|Ga0099830_11798107	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300009643\|Ga0116110_1157488	Not Available	749	Open in IMG/M
3300009824\|Ga0116219_10377662	Not Available	792	Open in IMG/M
3300009839\|Ga0116223_10000608	All Organisms → cellular organisms → Bacteria	42694	Open in IMG/M
3300010048\|Ga0126373_10892908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300010339\|Ga0074046_10911754	Not Available	510	Open in IMG/M
3300010341\|Ga0074045_10475343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300010343\|Ga0074044_10571688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300010343\|Ga0074044_10595009	Not Available	722	Open in IMG/M
3300010361\|Ga0126378_10214610	All Organisms → cellular organisms → Bacteria → Acidobacteria	2006	Open in IMG/M
3300010361\|Ga0126378_10889966	Not Available	997	Open in IMG/M
3300010379\|Ga0136449_102938232	Not Available	668	Open in IMG/M
3300010396\|Ga0134126_10005028	All Organisms → cellular organisms → Bacteria	16521	Open in IMG/M
3300010396\|Ga0134126_10237372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2162	Open in IMG/M
3300010396\|Ga0134126_10447813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1494	Open in IMG/M
3300012096\|Ga0137389_10832283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	792	Open in IMG/M
3300012200\|Ga0137382_10080946	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300012202\|Ga0137363_10345865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1230	Open in IMG/M
3300012362\|Ga0137361_10689936	Not Available	933	Open in IMG/M
3300012362\|Ga0137361_10813965	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300012582\|Ga0137358_10572476	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012917\|Ga0137395_10248110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1250	Open in IMG/M
3300012927\|Ga0137416_10882825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → unclassified Candidatus Contendobacter → Candidatus Contendobacter sp.	794	Open in IMG/M
3300012975\|Ga0134110_10151150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	959	Open in IMG/M
3300014164\|Ga0181532_10016840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5430	Open in IMG/M
3300014164\|Ga0181532_10112667	All Organisms → cellular organisms → Bacteria → Proteobacteria	1678	Open in IMG/M
3300014164\|Ga0181532_10158206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1357	Open in IMG/M
3300014164\|Ga0181532_10462990	Not Available	698	Open in IMG/M
3300014164\|Ga0181532_10519561	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	651	Open in IMG/M
3300014201\|Ga0181537_10222789	Not Available	1297	Open in IMG/M
3300014495\|Ga0182015_10330996	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300016341\|Ga0182035_11611867	Not Available	585	Open in IMG/M
3300017955\|Ga0187817_10757870	Not Available	619	Open in IMG/M
3300017961\|Ga0187778_10794260	Not Available	645	Open in IMG/M
3300017972\|Ga0187781_10248183	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300017974\|Ga0187777_10792432	Not Available	676	Open in IMG/M
3300018057\|Ga0187858_10335239	Not Available	951	Open in IMG/M
3300018058\|Ga0187766_11175402	Not Available	554	Open in IMG/M
3300018085\|Ga0187772_11351167	Not Available	528	Open in IMG/M
3300018086\|Ga0187769_10584329	Not Available	844	Open in IMG/M
3300018086\|Ga0187769_11309184	Not Available	548	Open in IMG/M
3300018090\|Ga0187770_10921444	Not Available	702	Open in IMG/M
3300019786\|Ga0182025_1200600	Not Available	1331	Open in IMG/M
3300020199\|Ga0179592_10133176	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300021170\|Ga0210400_10000068	All Organisms → cellular organisms → Bacteria	144061	Open in IMG/M
3300021476\|Ga0187846_10001475	All Organisms → cellular organisms → Bacteria	13279	Open in IMG/M
3300021560\|Ga0126371_10000622	All Organisms → cellular organisms → Bacteria	29456	Open in IMG/M
3300024290\|Ga0247667_1016307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1463	Open in IMG/M
3300024330\|Ga0137417_1434667	All Organisms → cellular organisms → Bacteria	2023	Open in IMG/M
3300026523\|Ga0209808_1083133	Not Available	1377	Open in IMG/M
3300026552\|Ga0209577_10005454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11864	Open in IMG/M
3300027706\|Ga0209581_1000497	All Organisms → cellular organisms → Bacteria → Acidobacteria	81778	Open in IMG/M
3300027773\|Ga0209810_1231667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300027854\|Ga0209517_10000133	All Organisms → cellular organisms → Bacteria	127164	Open in IMG/M
3300027857\|Ga0209166_10000498	All Organisms → cellular organisms → Bacteria	43204	Open in IMG/M
3300027911\|Ga0209698_10240797	Not Available	1448	Open in IMG/M
3300031090\|Ga0265760_10026041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1710	Open in IMG/M
3300031231\|Ga0170824_108972354	Not Available	524	Open in IMG/M
3300031474\|Ga0170818_112100090	Not Available	604	Open in IMG/M
3300031670\|Ga0307374_10040432	All Organisms → cellular organisms → Bacteria	5102	Open in IMG/M
3300031670\|Ga0307374_10082872	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2932	Open in IMG/M
3300031679\|Ga0318561_10749482	Not Available	537	Open in IMG/M
3300031708\|Ga0310686_109132841	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300031946\|Ga0310910_10771135	Not Available	758	Open in IMG/M
3300031962\|Ga0307479_11869792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	551	Open in IMG/M
3300032770\|Ga0335085_10002453	All Organisms → cellular organisms → Bacteria	34575	Open in IMG/M
3300032770\|Ga0335085_10064713	All Organisms → cellular organisms → Bacteria	4869	Open in IMG/M
3300032770\|Ga0335085_10816743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300032783\|Ga0335079_10373688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1542	Open in IMG/M
3300032783\|Ga0335079_11111054	Not Available	800	Open in IMG/M
3300032805\|Ga0335078_10216862	All Organisms → cellular organisms → Bacteria → Acidobacteria	2640	Open in IMG/M
3300032805\|Ga0335078_11026077	Not Available	974	Open in IMG/M
3300032805\|Ga0335078_11443573	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	773	Open in IMG/M
3300032828\|Ga0335080_10004854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	13745	Open in IMG/M
3300032828\|Ga0335080_10023799	All Organisms → cellular organisms → Bacteria	6640	Open in IMG/M
3300032828\|Ga0335080_10868046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	928	Open in IMG/M
3300032892\|Ga0335081_10000418	All Organisms → cellular organisms → Bacteria	76037	Open in IMG/M
3300032892\|Ga0335081_10977811	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	989	Open in IMG/M
3300032893\|Ga0335069_10005268	All Organisms → cellular organisms → Bacteria	19040	Open in IMG/M
3300032893\|Ga0335069_10820271	Not Available	1046	Open in IMG/M
3300032895\|Ga0335074_10001495	All Organisms → cellular organisms → Bacteria	31717	Open in IMG/M
3300032895\|Ga0335074_10362927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1601	Open in IMG/M
3300032896\|Ga0335075_10127905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3237	Open in IMG/M
3300032897\|Ga0335071_10275303	Not Available	1637	Open in IMG/M
3300032898\|Ga0335072_10620929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300032898\|Ga0335072_11066849	Not Available	733	Open in IMG/M
3300033134\|Ga0335073_11927203	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300033158\|Ga0335077_10448699	Not Available	1375	Open in IMG/M
3300033405\|Ga0326727_10508469	Not Available	1045	Open in IMG/M
3300033405\|Ga0326727_10543318	Not Available	992	Open in IMG/M
3300033805\|Ga0314864_0136563	Not Available	618	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.74%
Aquatic	Environmental → Aquatic	12.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.91%
Freshwater	Environmental → Aquatic → Freshwater	9.43%
Sediment	Environmental → Aquatic → Sediment	2.83%
Peat	Environmental → Terrestrial → Peat	1.89%
Cave	Environmental → Terrestrial → Cave	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	35.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Clay	Environmental → Terrestrial → Soil → Clay	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	33.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.49%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	21.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.66%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10027562	3300000580	Forest Soil	MRVKSFTYQKSVLGTYYKRGLLNLQKMDDHISKMLGDGWEILTQTAHTGDRRILRPFAKRDTITVSFRKQ*
Ga0062389_1012980112	3300004092	Bog Forest Soil	MKVKSFTYRKSLFGTYYKQGLLNLQKMDDHMAKMLSEGWEVLTQTAHSGERMVLRPFAKRDTITVSFRKP*
Ga0062595_1009997452	3300004479	Soil	VLVQKLGLVNRKSLFGTYYKQGLFSIQKMDDHIAKMLSDGWEVLTQTAHNGERRVLRPFAKRDAITISFSKR
Ga0066672_101183622	3300005167	Soil	MVARTARIKRAKSFTYQKSVFATYYKRGLLNLYKMDDHITKVLSDRREILTQTSHTGDRRILRPFAKRDPITVPFRKN*
Ga0066690_104817541	3300005177	Soil	MVARTARIKRAKSFTYQKSVFATYHKRGLLNLYKMDDHITKVLSDRREILTQTSHTGDRRILRPFAKRDPITVPFRKN*
Ga0066688_109655361	3300005178	Soil	GTYRKRGLLNVQKMDTHIAKMLDAGWEIVTQTSHAGERNRMLRPFGKRDTITVSFKRQ*
Ga0070741_103683312	3300005529	Surface Soil	MRVKSFTYQKSVFGTYYKRSLLNLTKMDDHIAKMLSDGWEILTQTSHTGDRRILRPFAKRDTITVSFKKA*
Ga0070739_103190421	3300005532	Surface Soil	MSVKSFTYQKSVFGTYYKRGLLNLTKMDDHIAKMLGDGWEILTQTSHTGDRRILRPFAKRDTITVSFRKN*
Ga0070730_1000061013	3300005537	Surface Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHVAKMLNDGWEILTQTAHTGDRRILRPFAKRDTITVSFRKP*
Ga0075029_1001063362	3300006052	Watersheds	MQIKSFTYRKSFFGIYRKQGLLDLQKMDDHIAKMLNEGWEILSQTATSGESVVLKPFSKRDTITVTFRKN*
Ga0075030_1006637112	3300006162	Watersheds	MQIKSFTYRKSFFGIYRKQGLLDLQKMDDHIAKMLNDGWEVLSQTATSGESIVLKPFSKRDTITISFRRNDKRERP*
Ga0066659_110755711	3300006797	Soil	MRVKSFTYQKSVFGTYYKRGLLNLRKMDDHIAKMLNDGWEILTQTAHTGDRRILRPFAKRDTLTISFKKE*
Ga0079220_102805202	3300006806	Agricultural Soil	TYQKSVFGTYYKRGLLNLQKMDNHIATMLNDGWEILTQTSHTGDRRILRPFAKRDTITVSFRKS*
Ga0099794_103910081	3300007265	Vadose Zone Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHIAKMLNDGWEILTQTASTGDRRILRPFAKRDAITVSFRKE*
Ga0099794_107466611	3300007265	Vadose Zone Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHIAKMLDDGWEILTQTAHTGDRRILRPFAKRDAITVSFRKP*
Ga0099830_117981071	3300009088	Vadose Zone Soil	MRVKSFTYRKSVFGAYYKRGLLNLQKMDKHIAKMLNDGWEILTQTAHTGDRRVLRPFAKRETITVSFRKT*
Ga0116110_11574881	3300009643	Peatland	MEVKSFTYRKSLFGTYYKQGLFNIRKMDDHIARMLKDGWEVLSQTAHSGERRVLRPFAKRDTITVSFKKK*
Ga0116219_103776622	3300009824	Peatlands Soil	MEVKSFTYRKSLFGTYYKQGLFNSQKMDSHIAKMLNDGWELLTQTAHSGERRVLRPFA
Ga0116223_1000060821	3300009839	Peatlands Soil	MEVKSFTYRKSLFGTYYKQGLFNSQKMDSHIAKMLNDGWELLTQTAHSGERRVLRPFAKRDTITVSFRKK*
Ga0126373_108929081	3300010048	Tropical Forest Soil	MQIKTFTYRKSFFGIYRKQGLLDLQKMDAHISKMLNDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRS*
Ga0074046_109117542	3300010339	Bog Forest Soil	MQIKSFTYRKSVFGIYRRQGLLDLQKMDDHIAKMLSDGWKILSQTATSGENIVLKPFSKRDTITVTFRKN*
Ga0074045_104753432	3300010341	Bog Forest Soil	MTPMTQVGRNSMQIKSFTYRRSFFGTYRKQGLLDLQKMDDHIAKMLSDGWEVLSQTATSGESIVLKPFSKRDTITVTYRKN*
Ga0074044_105716882	3300010343	Bog Forest Soil	MKVKSFTYRKSLFGTYYKRGLLNLQKMDDHMAKMLSEGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP*
Ga0074044_105950091	3300010343	Bog Forest Soil	MEVKSFNYRKSLFGTYYKQGLLNLQKMDDHMAKMLSEGWEVLTQTAHSGERMVLRPFAKRDTITVSFRKI*
Ga0126378_102146107	3300010361	Tropical Forest Soil	MRVKSFTYQKSVFGTYYKRGLLNLTKMDNHIAKMLSDGWEILTQTSHTGDRRVLRPFAKRDAITVSFRKS*
Ga0126378_108899661	3300010361	Tropical Forest Soil	MRVKSFTYEKSLFGTYRKRGLLNMQNMDAHIAKMLDAGWEILTQTSHTGDRNRMLRPFGKRDTITVSFKKQ*
Ga0136449_1029382322	3300010379	Peatlands Soil	MVLMAQVGRNSMQIKSYTYRRSFFGTYRKQGLLDLQKMDDHIAKMLSDGWEILSQTATSGESAVLKPFSKRDTITITFRKL*
Ga0134126_100050288	3300010396	Terrestrial Soil	MAAAFGKWSSAMQVKSFTYQKNFFGTYYRRAFLNREKMDDHIAKMLNDGWEILTQTSHAGDWRTLLPFAKRDTITVSFGKR*
Ga0134126_102373722	3300010396	Terrestrial Soil	MQVKSFTYQKSFVGTYYKRGFLNLHKMDDHIAKMLSEGWELLTQTSHAGDWRTLLPFAKRDSITISFRKL*
Ga0134126_104478131	3300010396	Terrestrial Soil	MQVKSFTYQKNFFGTYKRGFLNLQKMDDHIARMLSEGWEILTQTSQAGDWRTLLPFAKRDSITISFRKQ*
Ga0137389_108322831	3300012096	Vadose Zone Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDAHIAKMLDDGWEILTQTAHTGDRRILIPFAKRDTITVSFRKP*
Ga0137382_100809462	3300012200	Vadose Zone Soil	MRVKSFTYQKSVLGRYYKRGLLNLTKMDDHIAKMLSDGWEILTQTSHTGDRRILRPFAKRDAITISFRKS*
Ga0137363_103458652	3300012202	Vadose Zone Soil	MRVKSFTYEKTVFGTYRKRGLLNLQKMDNHIAKMLDDGWEILTQTAHTGDRQILRPFAKRDAITVSFRKP*
Ga0137361_106899362	3300012362	Vadose Zone Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHIAKMLNDGWEILTQTASTGDRRILRPFAKRDSITVSFRKQ*
Ga0137361_108139651	3300012362	Vadose Zone Soil	MRVKSFTYEKTVFGTYRKRGLLNRQKMDNHIAKMLDDGWEILNQTAHTGDRRILRPFAKRDTITVSFRTK*
Ga0137358_105724762	3300012582	Vadose Zone Soil	MRVKSFTYEKTVFGTYRKRGLLNRQKMDNHIAKMLDGGWEILTQTAHTGDRQILRPFAKRDAITVSFRKP*
Ga0137395_102481103	3300012917	Vadose Zone Soil	MRVKSYTYQKSVFGTYYKRGLLNLQKMDNHVAKMLDDGWEILTQTSHTGDRRILRPFAKRDTITVSFRRK*
Ga0137416_108828251	3300012927	Vadose Zone Soil	MRVKSFTYQKSVFGRYYKRGLLKLQKMDSHIAKMLDDGWEILTQTSHSGDRRIRRPFAKRDAITVSFRKK*
Ga0134110_101511502	3300012975	Grasslands Soil	MVARTARIKRAKSFTYQKNVFATYYKRGLLNLYKMDDHITKVLSDRREILTQTSHTGDRRILRPFAKRDPITVPFRKN*
Ga0181532_100168406	3300014164	Bog	MQIKSFTYRKSFFGIYRKQGLLDLQKMDDHIAKMLSDGWEILSQTATSGESIVLKPFSKRDTITITFRRN*
Ga0181532_101126672	3300014164	Bog	MQIKSFTYRKSFLGIYRKQGLLDLQKMDDHIAKMLSEGWEILSQTATSGESIVLKPFSKRDTITVTFRKN*
Ga0181532_101582063	3300014164	Bog	MQVKTFTYRKNFFGTYRKQGLLDLQKMDDHISKMLKDGWEVLSQTSHSGERIVLRPFSKRDTITITYRRN*
Ga0181532_104629902	3300014164	Bog	SFTYRKSFFGTYRKQGLLDLQKMDDHIATMLSDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRN*
Ga0181532_105195612	3300014164	Bog	SFTYRKSFFGTYRKQGLLDLQKMDDHIAKMLSDGWEILSQTATSGESIILKPFSKRDTITVTFRKN*
Ga0181537_102227891	3300014201	Bog	MEVKSFSYRKSLFGTYYKQGLFNILKMDDHMARMLKDGWEVLSQTAHSGERRVLRPFAKRDTITVSFKRK*
Ga0182015_103309961	3300014495	Palsa	VEVKSFTYRKSLFGTYYKQELLNLQKMDDHMAKMMNDGWEVLTQTAHCGERRILRPFSKRDTITISYAKK*
Ga0182035_116118671	3300016341	Soil	MRVKSFTYQKSVLGTYYKRGLLNLQKMDDHISKMLSDGWEILTQTAHTGDRRILRPFAKRDTITVSFR
Ga0187817_107578701	3300017955	Freshwater Sediment	MEIKSFTYRKSLFGTYYKRGLLNLQKMDDHMAKMLSEGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP
Ga0187778_107942601	3300017961	Tropical Peatland	MEVKSFTYRKSLFGTYYKRGLLNLQKMDDHMAKMLSDGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP
Ga0187781_102481831	3300017972	Tropical Peatland	MEVKSFTYRKSLFGTYYKRGLLNLQKMDDHMAKMLSEGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP
Ga0187777_107924322	3300017974	Tropical Peatland	MQIKTFTYRKSFFGTYRKQGLLDLQKMDNHISKMLNDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRS
Ga0187858_103352392	3300018057	Peatland	LEEVVEVKSFTYRKSLFGTYHKQGLLNIQKMDDHIAKLLSEGWEVLAQTAHSGERRILRPFAKRDTITVSFKKK
Ga0187766_111754021	3300018058	Tropical Peatland	MQIKTFTYRKSFFGTYRKQGLLDLQKMDDHIGKMLSDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRS
Ga0187772_113511671	3300018085	Tropical Peatland	MQVKSFTYQKNVFGTYYKRGLLNLQKMDDHIAKMLSGGWEILTQTSHTGDRRVLRPFAKRDSITVSFRKS
Ga0187769_105843291	3300018086	Tropical Peatland	MQVKSFTYEKNVFGTYYKRGLLNLQKMDDHIAKMLSDGWEILTQTACTGDRRILRPFAKRDAITV
Ga0187769_113091842	3300018086	Tropical Peatland	MQVKSFTYRKSVFGTYYKRGLLNLQKMDDHMAKMLSEGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP
Ga0187770_109214441	3300018090	Tropical Peatland	MRVKSFTYQKNVFGTYYKSGLLNLQKMDDHIAKMLSDGWEVLTQTSHTGDRRILRPFAKRDTIVV
Ga0182025_12006001	3300019786	Permafrost	MEVKSFTYRKSLFGTYYKQGLLNVRKMDAHIARMLSDGWEVLTQTAHSGERRIFRPFAKRDTITVSFRKT
Ga0179592_101331762	3300020199	Vadose Zone Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHVAKMLNAGWEILTQTGHTGDRRILRPFAKRDSITVSFRKK
Ga0210400_10000068123	3300021170	Soil	MRVKSFTYQKSVFGTYYKRGLINLRKMDDHIAKMLDAGREILTQIAHTGDRRILRPFAKRDTITVSFRKK
Ga0187846_100014759	3300021476	Biofilm	MQVKSFTYQKNFFGTYYKRGFLNLQKMDHHIAKMLNDGWEILTQTSHAGDWRTLLPFAKRDSITISFRTQ
Ga0126371_1000062216	3300021560	Tropical Forest Soil	MQVKSFTYQKNFFGTYYKRGLLNLHKMDDHIAKMLNDGWEILTQTSQAGDWRTLLPFAKRDSITISFRKR
Ga0247667_10163072	3300024290	Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHIAKMLNDGWEILTQTASTGDRRILRPFAKRDSITVSFRKQ
Ga0137417_14346671	3300024330	Vadose Zone Soil	MRVKSFTYEKTVFRNLPQAWTAQRQKMDNHIAKMLDGGWEILTQTAHTGDRRVLRPFAKRDTITVSFRKT
Ga0209808_10831333	3300026523	Soil	FTYQKSVFATYYKRGLLNLYKMDDHITKVLSDRREILTQTSHTGDRRILRPFAKRDPITVPFRKN
Ga0209577_100054549	3300026552	Soil	MVARTARIKRAKSFTYQKSVFATYYKRGLLNLYKMDDHITKVLSDRREILTQTSHTGDRRILRPFAKRDPITVPFRKN
Ga0209581_100049765	3300027706	Surface Soil	MRVKSFTYQKSVFGTYYKRSLLNLTKMDDHIAKMLSDGWEILTQTSHTGDRRILRPFAKRDTITVSFKKA
Ga0209810_12316671	3300027773	Surface Soil	AMSVKSFTYQKSVFGTYYKRGLLNLTKMDDHIAKMLGDGWEILTQTSHTGDRRILRPFAKRDTITVSFRKN
Ga0209517_1000013385	3300027854	Peatlands Soil	MEVKSFTYRKSLFGTYYKQGLFNSQKMDSHIAKMLNDGWELLTQTAHSGERRVLRPFAKRDTITVSFRKK
Ga0209166_1000049833	3300027857	Surface Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDNHVAKMLNDGWEILTQTAHTGDRRILRPFAKRDTITVSFRKP
Ga0209698_102407972	3300027911	Watersheds	MQIKSFTYRKSFFGIYRKQGLLDLQKMDDHIAKMLNDGWEVLSQTATSGESIVLKPFSKRDTITISFRRNDKRERP
Ga0265760_100260412	3300031090	Soil	VKVKSFTYRKGLFGTYYKQGLLNLQKMDDHIAKMLSEGWEVLTQTAHSGERRVLRPFAKRDTITVSFKK
Ga0170824_1089723541	3300031231	Forest Soil	MEVKSFTYRKSLFGTYYKQGLLNVQKMDAHIARMLSDGWEVLTQTAHSGERRVLRPFAKRDTITVSFRKP
Ga0170818_1121000901	3300031474	Forest Soil	MEVKSFTYRKSLFGTYYKQGLLNIQKMDDHIANMLSDGWEVLTQTAHNGERRVLRPFAKR
Ga0307374_100404322	3300031670	Soil	MQVKSFTYQKNFFGTYKRGFLNLQKMDEHIAKMLSEGWEILTQTSQAGDWRTLLPFAKRDSITISFRKP
Ga0307374_100828726	3300031670	Soil	MQVKSFTYQKNFFGTYYKRGFLNLQKMDDHIAKMLDDGGEILTQTSHAGDRRTLLPFAKRDTITVSFRKK
Ga0318561_107494821	3300031679	Soil	MRVKSFTYQKSVLGTYYKRGLLNLQKMDDHISKMLSDGWEILTQTAHTGDRRILRPFAKRDTIT
Ga0310686_1091328412	3300031708	Soil	MEVKSFTYRKSLFGTYYKQGLLNVQKMDAHIERMLSDGWEVLTQMAHSGERRVLRPFSKRDTITISYRKK
Ga0310910_107711351	3300031946	Soil	MRVKSFTYQKSVLGTYYKRGLLNLQKMDDHISKMLSDGWEILTQTAHTGDRRILRPFAKRDTITVSFRKH
Ga0307479_118697921	3300031962	Hardwood Forest Soil	MRVKSFTYQKSVFGTYYKRGLLNLTRMDKHIAKMLSDGWEILTQASHTGDRRILRPFAKRDTITVSFKKTNVNA
Ga0335085_1000245319	3300032770	Soil	MQVKTFTYRKNFFGTYRKQGLLDLQKMDDHISKMLKDGWEVLSQTSHSGERIVLRPFSKRDTITITYQRN
Ga0335085_100647134	3300032770	Soil	MQIKTFTYRKSFFGTYRKQGLLDLQKMNDHISKMLKDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRS
Ga0335085_108167432	3300032770	Soil	MQIKTFTYRKNFFGTYRKQGLLDLQKMDDHIAKMMNDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRN
Ga0335079_103736882	3300032783	Soil	MQIKSFTYRRSFFGIYRKQGLLDLQKMDDHIAKMLSDGWEILNQTATSGENIVLKPFAKRDTITVTYRKN
Ga0335079_111110542	3300032783	Soil	MEVKSFTYRKSLLGTYYKQGLLNLQKMDDHIAEMLTDGWEVLTQTAHNGERRVLRPFAKRDTITVSFA
Ga0335078_102168622	3300032805	Soil	MDVKSFTYRKSLLGTYYKRGLLNLQKMDDHMAKMLSEGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP
Ga0335078_110260772	3300032805	Soil	MEVKSFTYRKSLLGTYYKQGLLNLQKMDDHIAEMLTDGWEVLTQTAHNGERRVLRPFAKRDTITVSFAKK
Ga0335078_114435732	3300032805	Soil	MQVKSFTYEKNVFGTYYKRGLLSLQKMDDHIAKMLSDGWEILTQTAHTGDRRILRPFAKRDTITVSFSKP
Ga0335080_100048541	3300032828	Soil	MQVKTFTYRRNFFGTYRKQGPLDSQKMDDHIAKMLNEGWEILSQTATSGESIVLKPFSKRDTITITFRRN
Ga0335080_100237993	3300032828	Soil	MQIKSFTYRKSFFGIYRKQGLLDLQKMDDHIAKMLNEGWEILSQTATSGDNIVLKPFSKRDTITVTYRKS
Ga0335080_108680461	3300032828	Soil	MQIKTFTYRKNFFGTYRKQGLLDLQKMDDHISKMLRDGWEVLSQTSHGGERIVLRPFSKRDTITITFRRN
Ga0335081_1000041857	3300032892	Soil	MRVKSFTYQKSVFGTYYKRGLLNLQKMDHHIAKMLNDGWEILTQTASTGDRRILRPFAKRDSITVSFRKQ
Ga0335081_109778113	3300032892	Soil	MEVKSFTYRKSVFGTYYKRGLLNLQKMDDHMAKMLSEGWEVVTQTAHSGERMVLRPFAKRDTITVSFRKP
Ga0335069_100052684	3300032893	Soil	MQEMQIKTFTYRKGFFGTYRKQGLLDLQKMDVHMAKMLSDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRS
Ga0335069_108202711	3300032893	Soil	MQIKTFTYRKSFFGTYRKQGLLDLQKMDDHISKMLNDGWEVLSQISHSGQRIVLRPFSKRDTITVIFRKT
Ga0335074_1000149522	3300032895	Soil	MQVKSFTYEKNVFGTYYKRGLLNLQKMDDHIAKMLSDGWEILTQTSHTGDRRILRPFAKRDAITVSFRKN
Ga0335074_103629273	3300032895	Soil	MQVKSFTYQRNVFGTYYKRGLLNLQKMDDHIAKMLSDGWEILTQTSHTGDRRVLRPFAKRDSITVSFRKS
Ga0335075_101279052	3300032896	Soil	MRVKSFTYEKNFWGTYRKRGLLNSQKMDDHIAKMLNDRWEILSQISHSGDWRTLLPFAKRDAITISFRKP
Ga0335071_102753031	3300032897	Soil	MQIKTFTYRKSFFGTYRKQGLLDLQKMDVHISKMLNDGWEVLSQTSHSGERIVPRPFSKRDTITITFRRN
Ga0335072_106209292	3300032898	Soil	MQVKSFTYQKNVFGTYYKRGLLNLQKMDDHIAKMLSDGWEILTQTSHTGDRRVLRPFAKRDSITVSFRKS
Ga0335072_110668491	3300032898	Soil	MQVKSFRYQKNFFGTYYKRGLLNLHKMDDHIAKMLNDGWEILTQTSPAGDWRTLLPFAKRDSITISFRKR
Ga0335073_119272031	3300033134	Soil	SEAPSRLQMCKNSTAVGFGNWRSPMQVKSFTYQKNVFGTYYKRGFLNLEKMDDHIAKMLNDGWEILTQASQAGDWRTLVPFAKRDSITISFRKK
Ga0335077_104486992	3300033158	Soil	MQIKSFTYRRSFFGIYRKQGLLDLQKMDDHIAKMLSDGWEILNQTATSGESIVLKPFSKRDTITVTYRKN
Ga0326727_105084691	3300033405	Peat Soil	MQVKTFTYRKNSFGTYRKQGLLDLQKMDDHISKMLSDGWQVLSQTSHSGERMVLRPFSKRDTITITFRRN
Ga0326727_105433182	3300033405	Peat Soil	MQIKSYTYRKSIFGIYRKRALLDLQKMDDHIAKMLSDGWEVLTQSAHSGERIVLRPFSKRDTITVTFRKN
Ga0314864_0136563_165_377	3300033805	Peatland	MQIKTFTYRKSFFGTYRKQGLLDLQKIDDHISKMLNDGWEVLSQTSHSGERIVLRPFSKRDTITITFRRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093554

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences