Metagenome / Metatranscriptome Family F093631

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093631
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	79 residues
Representative Sequence	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Number of Associated Samples	93
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.36 %
% of genes near scaffold ends (potentially truncated)	31.13 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.509 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (42.453 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.717 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.29% β-sheet: 0.00% Coil/Unstructured: 36.71%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13545	HTH_Crp_2	38.68
PF05239	PRC	5.66
PF09361	Phasin_2	1.89
PF07167	PhaC_N	0.94
PF05957	DUF883	0.94
PF12244	DUF3606	0.94
PF02082	Rrf2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.94
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.94
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.94
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.94
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.94
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.94
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.94
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.94
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.94
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.51 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.51 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.51 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.57 %
Unclassified	root	N/A	8.49 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	86.79 %
Unclassified	root	N/A	8.49 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	55.66 %
Unclassified	root	N/A	8.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	37.74 %
Unclassified	root	N/A	8.49 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	37.74 %
Unclassified	root	N/A	8.49 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.72 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	37.74 %
Unclassified	root	N/A	8.49 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.72 %
Afipia birgiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae	0.94 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	37.74 %
Unclassified	root	N/A	8.49 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.72 %
Afipia sp. OHSU_II-uncloned	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	0.94 %
Afipia birgiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17463633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1078	Open in IMG/M
2162886013\|SwBSRL2_contig_3899945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	835	Open in IMG/M
2228664021\|ICCgaii200_c0825321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1285	Open in IMG/M
3300000890\|JGI11643J12802_10273972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1102	Open in IMG/M
3300000955\|JGI1027J12803_100229022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300000956\|JGI10216J12902_112407713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1048	Open in IMG/M
3300004463\|Ga0063356_105705336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	534	Open in IMG/M
3300004479\|Ga0062595_100694160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	816	Open in IMG/M
3300004643\|Ga0062591_100334013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1214	Open in IMG/M
3300004798\|Ga0058859_11753399	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300004801\|Ga0058860_12008200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	828	Open in IMG/M
3300005295\|Ga0065707_10724425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	629	Open in IMG/M
3300005345\|Ga0070692_10197464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1176	Open in IMG/M
3300005347\|Ga0070668_100028647	All Organisms → cellular organisms → Bacteria → Proteobacteria	4227	Open in IMG/M
3300005353\|Ga0070669_100141410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1856	Open in IMG/M
3300005355\|Ga0070671_100284802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1406	Open in IMG/M
3300005439\|Ga0070711_101663115	Not Available	559	Open in IMG/M
3300005441\|Ga0070700_101212345	Not Available	631	Open in IMG/M
3300005457\|Ga0070662_100627753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	905	Open in IMG/M
3300005459\|Ga0068867_100613921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	950	Open in IMG/M
3300005466\|Ga0070685_10772643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300005518\|Ga0070699_101657325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae	586	Open in IMG/M
3300005536\|Ga0070697_100186160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1761	Open in IMG/M
3300005563\|Ga0068855_100189633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2320	Open in IMG/M
3300005578\|Ga0068854_100667965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300005614\|Ga0068856_100977940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	865	Open in IMG/M
3300005617\|Ga0068859_101384469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	776	Open in IMG/M
3300005718\|Ga0068866_11433910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	506	Open in IMG/M
3300005842\|Ga0068858_100459308	Not Available	1228	Open in IMG/M
3300005843\|Ga0068860_100111437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2616	Open in IMG/M
3300006792\|Ga0075530_1087770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1030	Open in IMG/M
3300007076\|Ga0075435_101332735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	629	Open in IMG/M
3300009092\|Ga0105250_10276486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300009101\|Ga0105247_10404592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	973	Open in IMG/M
3300009147\|Ga0114129_10366665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1905	Open in IMG/M
3300009156\|Ga0111538_11664094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300009162\|Ga0075423_10481548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1305	Open in IMG/M
3300009553\|Ga0105249_11532337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	739	Open in IMG/M
3300010147\|Ga0126319_1209312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	919	Open in IMG/M
3300010375\|Ga0105239_10102665	All Organisms → cellular organisms → Bacteria → Proteobacteria	3164	Open in IMG/M
3300010399\|Ga0134127_11166132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	836	Open in IMG/M
3300012951\|Ga0164300_10010625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2880	Open in IMG/M
3300012951\|Ga0164300_10015451	All Organisms → cellular organisms → Bacteria → Proteobacteria	2526	Open in IMG/M
3300012951\|Ga0164300_10178471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1021	Open in IMG/M
3300012951\|Ga0164300_10633589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	636	Open in IMG/M
3300012955\|Ga0164298_10098703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1541	Open in IMG/M
3300012957\|Ga0164303_10016645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2729	Open in IMG/M
3300012957\|Ga0164303_10588784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	730	Open in IMG/M
3300012958\|Ga0164299_10035425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2212	Open in IMG/M
3300012958\|Ga0164299_10487413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300012960\|Ga0164301_10030659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2558	Open in IMG/M
3300012961\|Ga0164302_10015671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3136	Open in IMG/M
3300012961\|Ga0164302_10218819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1186	Open in IMG/M
3300012961\|Ga0164302_10439474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300012984\|Ga0164309_10117528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1712	Open in IMG/M
3300012984\|Ga0164309_10697326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300012985\|Ga0164308_10135783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1793	Open in IMG/M
3300012985\|Ga0164308_11321565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	655	Open in IMG/M
3300012986\|Ga0164304_10009964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4161	Open in IMG/M
3300012987\|Ga0164307_10180994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1418	Open in IMG/M
3300012988\|Ga0164306_11042306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	676	Open in IMG/M
3300012989\|Ga0164305_10089400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1944	Open in IMG/M
3300012989\|Ga0164305_10391239	Not Available	1061	Open in IMG/M
3300013102\|Ga0157371_10551123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	855	Open in IMG/M
3300013306\|Ga0163162_10429804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1453	Open in IMG/M
3300013308\|Ga0157375_12716110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	592	Open in IMG/M
3300014745\|Ga0157377_10065602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2086	Open in IMG/M
3300015077\|Ga0173483_10982066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	504	Open in IMG/M
3300015374\|Ga0132255_102426398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	801	Open in IMG/M
3300018028\|Ga0184608_10062747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1491	Open in IMG/M
3300018028\|Ga0184608_10309399	Not Available	694	Open in IMG/M
3300018051\|Ga0184620_10297150	Not Available	544	Open in IMG/M
3300018054\|Ga0184621_10308548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	558	Open in IMG/M
3300018076\|Ga0184609_10513762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300018081\|Ga0184625_10506952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300018466\|Ga0190268_10133328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1232	Open in IMG/M
3300020579\|Ga0210407_11370279	Not Available	526	Open in IMG/M
3300021078\|Ga0210381_10158513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	771	Open in IMG/M
3300025899\|Ga0207642_10701433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	638	Open in IMG/M
3300025900\|Ga0207710_10058190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1747	Open in IMG/M
3300025911\|Ga0207654_11358541	Not Available	518	Open in IMG/M
3300025914\|Ga0207671_10626692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	857	Open in IMG/M
3300025918\|Ga0207662_10191695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1319	Open in IMG/M
3300025923\|Ga0207681_10211622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1495	Open in IMG/M
3300025926\|Ga0207659_10447008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1088	Open in IMG/M
3300025931\|Ga0207644_10769724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	805	Open in IMG/M
3300025935\|Ga0207709_10419333	Not Available	1028	Open in IMG/M
3300025941\|Ga0207711_10107732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2474	Open in IMG/M
3300025949\|Ga0207667_11492469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	647	Open in IMG/M
3300025972\|Ga0207668_10793592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	838	Open in IMG/M
3300025986\|Ga0207658_10597103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	991	Open in IMG/M
3300026035\|Ga0207703_10398997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1276	Open in IMG/M
3300026041\|Ga0207639_11360703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	666	Open in IMG/M
3300026078\|Ga0207702_10933688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	860	Open in IMG/M
3300026088\|Ga0207641_10715224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	987	Open in IMG/M
3300026089\|Ga0207648_10295210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1452	Open in IMG/M
3300026121\|Ga0207683_10511351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1109	Open in IMG/M
3300027717\|Ga0209998_10166085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	571	Open in IMG/M
3300028381\|Ga0268264_10362938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1382	Open in IMG/M
3300028608\|Ga0247819_10361833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300028608\|Ga0247819_11021127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	524	Open in IMG/M
3300028814\|Ga0307302_10499409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	604	Open in IMG/M
3300031231\|Ga0170824_100934060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300031720\|Ga0307469_10290647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1341	Open in IMG/M
3300032174\|Ga0307470_10797499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300032174\|Ga0307470_11818860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.72%
Host-Associated	Host-Associated	45.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.17%
Plants	Host-Associated → Plants	43.40%
Aquatic	Environmental → Aquatic	7.55%
Human	Host-Associated → Human	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.81%
Sediment	Environmental → Aquatic → Sediment	5.66%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Digestive System	Host-Associated → Human → Digestive System	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.58%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01429550	2088090014	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGEFDPQKIKELVLAELQSRPNGL
SwBSRL2_0890.00006860	2162886013	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL
ICCgaii200_08253212	2228664021	Soil	MSPFRQHYDSFNPETLAVLEISFNDTLTELQRNDNGFDQASMRTAVADLVMKFASQGEFDPQKIKELVLAELQSRPN
JGI11643J12802_102739722	3300000890	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNG
JGI1027J12803_1002290221	3300000955	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGEFDPQKIKELVLAELQSRPN
JGI10216J12902_1124077132	3300000956	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKEL
Ga0063356_1057053361	3300004463	Arabidopsis Thaliana Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0062595_1006941602	3300004479	Soil	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0062591_1003340131	3300004643	Soil	ELSRAPPLTCGSNPMSPFRQHYDSFDPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGEFDPQKIKELVLAELQSRPNGL*
Ga0058859_117533992	3300004798	Host-Associated	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0058860_120082001	3300004801	Host-Associated	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0065707_107244251	3300005295	Switchgrass Rhizosphere	MSPFRQHYDSFNPETLAVLEISFNDTLTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELRSRPNGL*
Ga0070692_101974641	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQS
Ga0070668_1000286476	3300005347	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0070669_1001414102	3300005353	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNRL*
Ga0070671_1002848022	3300005355	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNVDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNRL*
Ga0070711_1016631151	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWIEVQRNDNGFDQASMRTAVADLIMKFASSGESDPQKIKALVLAALASQPNGL*
Ga0070700_1012123451	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	HYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNRL*
Ga0070662_1006277532	3300005457	Corn Rhizosphere	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL*
Ga0068867_1006139211	3300005459	Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSHPNGL*
Ga0070685_107726431	3300005466	Switchgrass Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALV
Ga0070699_1016573251	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0070697_1001861603	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0068855_1001896333	3300005563	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0068854_1006679652	3300005578	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALV
Ga0068856_1009779401	3300005614	Corn Rhizosphere	RWLREFCRTPACNAREQSMSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0068859_1013844692	3300005617	Switchgrass Rhizosphere	MYITDKHSQLRYRLGITDRSHRQRWLREFCRAPACNTRKQSMSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0068866_114339101	3300005718	Miscanthus Rhizosphere	QSMSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0068858_1004593081	3300005842	Switchgrass Rhizosphere	EFLAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0068860_1001114375	3300005843	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0075530_10877702	3300006792	Arctic Peat Soil	MSPFRQHYDSFDPETLAVLEISFNETWIELQRNGNGFDQASLKTTVADLIMKFASQGESDPQKIKELALAELQSRPNGL*
Ga0075435_1013327351	3300007076	Populus Rhizosphere	SVTCGSNPMSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL*
Ga0105250_102764861	3300009092	Switchgrass Rhizosphere	LAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRSNGL*
Ga0105247_104045922	3300009101	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNRL*
Ga0114129_103666653	3300009147	Populus Rhizosphere	MSPFRQHYDSFNPETLAVIEISFNDTLTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL*
Ga0111538_116640941	3300009156	Populus Rhizosphere	MSPFRQHYDSFNPETLAVLEISFNDTLTELQRNDNGFDQASMRTAVADLVMKFASQGEFDPQKIKELVLAELQSRPNGL*
Ga0075423_104815481	3300009162	Populus Rhizosphere	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNHNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPN*
Ga0105249_115323371	3300009553	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRSNGL*
Ga0126319_12093121	3300010147	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLAMKFASQGESDPQKIKELVLAELQSRPNGP*
Ga0105239_101026655	3300010375	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTTVADLIMKFASQGESDPQKIKALVLAALQSRPNGL*
Ga0134127_111661321	3300010399	Terrestrial Soil	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0164300_100106253	3300012951	Soil	MSPFRRHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0164300_100154511	3300012951	Soil	MSPFRQHYESFDPEILAVLEISFNETWIEVQGNGDGFDQASMRTAVADLIMKFASHGESDPQKIKALVLAALASQPNGL*
Ga0164300_101784711	3300012951	Soil	MSHFRQHYDSFDPEILAVLEISFKETWIEVQRNDNGFDQASMRTAVADLIMKFASNGESDPQKIKALVLAALASQPNGL*
Ga0164300_106335891	3300012951	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRSDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL*
Ga0164298_100987032	3300012955	Soil	HYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0164303_100166454	3300012957	Soil	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQ
Ga0164303_105887841	3300012957	Soil	SHFRQHYDSFDPEILAVLEISFNETWIEVQRNDNGFDQASRRTAVADLIMKFASHGESDPQKIKALVLAALASQPNGL*
Ga0164299_100354252	3300012958	Soil	MSHFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNGL*
Ga0164299_104874131	3300012958	Soil	MSPFRQHYESFDPEIVAVLETSFNETWTELQGNGDGFDQASMRTAVADLIMKFASHGESDPQKIKALVLAALASQPNGL*
Ga0164301_100306592	3300012960	Soil	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNGL*
Ga0164302_100156711	3300012961	Soil	SMSPFRQHYESFDPEILAVLEISFNETWIEVQRNRNGFDQASMRTAVADLIMKFASHGESDPQKIKALVLAALASQPNGL*
Ga0164302_102188192	3300012961	Soil	MSPFRKCYDSFDPETLAVLEISFNQAWTELQRSDSSLDQASTKTALADLIITFASHGESDPQKIKALALAAFEPHHETEPRERCG*
Ga0164302_104394742	3300012961	Soil	MSHFKQHYDSFDPEILAVLEISFNETWIEVQHNDNSFDQASMRTAVADLIMKFASHGESDPQKIKAL
Ga0164309_101175283	3300012984	Soil	HYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNGL*
Ga0164309_106973261	3300012984	Soil	MSPFRKCYDSFDPETLAVLEISFNQAWTELQRSDSSLDQASTKTALADLIITFASHGESDPQKIKALALAAFE
Ga0164308_101357833	3300012985	Soil	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRANGL*
Ga0164308_113215652	3300012985	Soil	MSPFRKCYDSFDPETLAVLEISFNQTWTDLQRNGNGFDHALTKTDVADLIIKFASQGESDPQKLKALVLATLASEPKGL*
Ga0164304_100099644	3300012986	Soil	MSPFRRHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNGL*
Ga0164307_101809941	3300012987	Soil	YDSFDPEILAVLEISFNETWTELQRNGNGFDQALTKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNGL*
Ga0164306_110423061	3300012988	Soil	MSPFRQHYESFDPEILAVLETSFNETWTELQGNGKGFDQASMRTAVADLIMKFASDGESDPQRIKALVLAALASQPNGL*
Ga0164305_100894003	3300012989	Soil	MSHFKQHYDSFDPEILAVLEISFNETWIEVQRNDNGFDQASMRTAVADLIMKFASNGESDPQKIKALVLSALASQPNGL*
Ga0164305_103912391	3300012989	Soil	MSPFRQHYESFDPEILAVLEISFNETWIEVQRNRNGFDQASMRTAVADLIMKFASHGESDPQKIKGLVLAALASQPNGL*
Ga0157371_105511232	3300013102	Corn Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFTSQGESDPQKIKALVLAALQSRPNGL*
Ga0163162_104298042	3300013306	Switchgrass Rhizosphere	QSMSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGEFDPQKIKALVMAALQSRPNGL*
Ga0157375_127161101	3300013308	Miscanthus Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNRL*
Ga0157377_100656022	3300014745	Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0173483_109820661	3300015077	Soil	MSPFRQHYDSFNPETLAVLEISFNDTLTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL*
Ga0132255_1024263981	3300015374	Arabidopsis Rhizosphere	NTREQSMSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL*
Ga0184608_100627471	3300018028	Groundwater Sediment	MSPFRQHYDSFDPETLAVLEISFNETWIELQRNGNGFDQASLKTAVANLIMKFASRGESDPQKIKELVLAALQSRPNGL
Ga0184608_103093991	3300018028	Groundwater Sediment	MSPFRQHYDPETLAVLEISFNATWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL
Ga0184620_102971501	3300018051	Groundwater Sediment	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAALQSRPNGL
Ga0184621_103085481	3300018054	Groundwater Sediment	LGHAPACKNRERPMSPFRQHYDSFDPETLAVLEISFNETWIELQRNGNGFDQASLKTAVANLIMKFASRGESDPQKIKELVLAALQSRPNGL
Ga0184609_105137621	3300018076	Groundwater Sediment	MSPFRQHYDSFDPEILAVLEISFNETWTELRGDGLDQASRRTAVADLMKFTSRGESDPQKIKALVLAAFASHRGKAEPKRRSG
Ga0184625_105069522	3300018081	Groundwater Sediment	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGQSDPQKI
Ga0190268_101333282	3300018466	Soil	MSPFRQHYESFDPETLAVLEISFNETWIELQRNGNGFDQASLKTAVADLIMKFASRGESDPQKIKELVLAALQSRPNGF
Ga0210407_113702791	3300020579	Soil	MSPFRQHYESFDTEILAVLEISFNETWIEVQRNGNGFDQASMRTAVADLIMKFASNGESDPQKIKALVLAALASQPNGL
Ga0210381_101585132	3300021078	Groundwater Sediment	MSPFRQHYDSFDPETLAVLEISFNETWIELQRNGNGFDQASLKTAVADLIMKFASRGESDPQKIKELVLAALQSRPNGL
Ga0207642_107014332	3300025899	Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207710_100581902	3300025900	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207654_113585411	3300025911	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNDNGFDQASMRTAVADLVMKFASKGESDPQKIKELVLAELQSRPNGL
Ga0207671_106266922	3300025914	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRSNGL
Ga0207662_101916951	3300025918	Switchgrass Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQ
Ga0207681_102116222	3300025923	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL
Ga0207659_104470081	3300025926	Miscanthus Rhizosphere	ARAIQMSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVMAALQSRPNGL
Ga0207644_107697241	3300025931	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNVDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL
Ga0207709_104193331	3300025935	Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTTVAELIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207711_101077321	3300025941	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207667_114924691	3300025949	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207668_107935922	3300025972	Switchgrass Rhizosphere	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELQSRPNGL
Ga0207658_105971031	3300025986	Switchgrass Rhizosphere	RKQSMSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207703_103989972	3300026035	Switchgrass Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTALADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207639_113607032	3300026041	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL
Ga0207702_109336881	3300026078	Corn Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQS
Ga0207641_107152241	3300026088	Switchgrass Rhizosphere	MSPFRQHYDSFDPEFLAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRPNGL
Ga0207648_102952103	3300026089	Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSHPNGL
Ga0207683_105113511	3300026121	Miscanthus Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELRHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRSNGL
Ga0209998_101660851	3300027717	Arabidopsis Thaliana Rhizosphere	MSPFRQHYDSFDPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGEFDPQKIKELVLAELQSRPNGL
Ga0268264_103629381	3300028381	Switchgrass Rhizosphere	MSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVLAALQSRP
Ga0247819_103618331	3300028608	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELV
Ga0247819_110211271	3300028608	Soil	QMSPFRQHYDSFDPEILAVLEISFNETWTELQHNGDGLDQASRRTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL
Ga0307302_104994091	3300028814	Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKVLVLAALQTGPNGN
Ga0170824_1009340601	3300031231	Forest Soil	ILAVLEISFNETWTELQRNGNGFDQALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRQNGL
Ga0307469_102906472	3300031720	Hardwood Forest Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLAELRSRPNGL
Ga0307470_107974992	3300032174	Hardwood Forest Soil	MSPFRQHYDSFNPETLAVLEISFNDTWTELQRNDNGFDQASMRTAVADLVMKFASQGESDPQKIKELVLADLQSRPKGL
Ga0307470_118188601	3300032174	Hardwood Forest Soil	RAPACNTREQSMSPFRRHYDSFDPEILAVLEISFNETWTELQRNGNGFDKALMKTAVADLIMKFASQGESDPQKIKALVMAALQSRPNGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093631

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences