NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F093709

Metagenome / Metatranscriptome Family F093709

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F093709
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 70 residues
Representative Sequence MAKITYNLTADQLAEMLLALDHHRGTDAEPATEADLKAWGLGHFQGMVQKYRESVINAANPVDSTAVAS
Number of Associated Samples 69
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 85.85 %
% of genes near scaffold ends (potentially truncated) 16.98 %
% of genes from short scaffolds (< 2000 bps) 86.79 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (65.094 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(84.906 % of family members)
Environment Ontology (ENVO) Unclassified
(96.226 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.906 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.39%    β-sheet: 0.00%    Coil/Unstructured: 53.61%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF00902TatC 1.89
PF00383dCMP_cyt_deam_1 0.94
PF13481AAA_25 0.94
PF00154RecA 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0805Twin-arginine protein secretion pathway component TatCIntracellular trafficking, secretion, and vesicular transport [U] 1.89
COG0468RecA/RadA recombinaseReplication, recombination and repair [L] 0.94


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.09 %
All OrganismsrootAll Organisms34.91 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002484|JGI25129J35166_1026594All Organisms → Viruses → Predicted Viral1263Open in IMG/M
3300002484|JGI25129J35166_1083699Not Available573Open in IMG/M
3300002514|JGI25133J35611_10025017All Organisms → Viruses → Predicted Viral2302Open in IMG/M
3300002514|JGI25133J35611_10025164All Organisms → Viruses → Predicted Viral2293Open in IMG/M
3300002519|JGI25130J35507_1034051All Organisms → Viruses → Predicted Viral1080Open in IMG/M
3300005426|Ga0066847_10090112All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium962Open in IMG/M
3300005508|Ga0066868_10278837Not Available507Open in IMG/M
3300005509|Ga0066827_10281793Not Available567Open in IMG/M
3300005520|Ga0066864_10166824Not Available631Open in IMG/M
3300006736|Ga0098033_1031632All Organisms → Viruses → Predicted Viral1602Open in IMG/M
3300006736|Ga0098033_1075687Not Available970Open in IMG/M
3300006736|Ga0098033_1104455Not Available805Open in IMG/M
3300006736|Ga0098033_1152368Not Available647Open in IMG/M
3300006736|Ga0098033_1170452Not Available607Open in IMG/M
3300006738|Ga0098035_1034844All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1892Open in IMG/M
3300006738|Ga0098035_1061841Not Available1348Open in IMG/M
3300006738|Ga0098035_1072370Not Available1227Open in IMG/M
3300006738|Ga0098035_1110830Not Available950Open in IMG/M
3300006750|Ga0098058_1024996Not Available1742Open in IMG/M
3300006750|Ga0098058_1129163Not Available674Open in IMG/M
3300006751|Ga0098040_1005797All Organisms → Viruses → Predicted Viral4509Open in IMG/M
3300006751|Ga0098040_1227001Not Available543Open in IMG/M
3300006753|Ga0098039_1099805All Organisms → Viruses → Predicted Viral1000Open in IMG/M
3300006753|Ga0098039_1122980Not Available890Open in IMG/M
3300006789|Ga0098054_1152764Not Available852Open in IMG/M
3300006926|Ga0098057_1033081All Organisms → Viruses → Predicted Viral1283Open in IMG/M
3300006927|Ga0098034_1095912Not Available851Open in IMG/M
3300006929|Ga0098036_1027797All Organisms → Viruses → Predicted Viral1780Open in IMG/M
3300007963|Ga0110931_1222056Not Available563Open in IMG/M
3300008050|Ga0098052_1060958All Organisms → Viruses → Predicted Viral1599Open in IMG/M
3300009149|Ga0114918_10018483All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C3385294Open in IMG/M
3300009173|Ga0114996_10279310All Organisms → Viruses → Predicted Viral1314Open in IMG/M
3300009173|Ga0114996_11250717Not Available518Open in IMG/M
3300009409|Ga0114993_10487252Not Available917Open in IMG/M
3300009409|Ga0114993_10642880Not Available777Open in IMG/M
3300009595|Ga0105214_109182Not Available677Open in IMG/M
3300009622|Ga0105173_1022964Not Available954Open in IMG/M
3300009706|Ga0115002_10477706Not Available910Open in IMG/M
3300009706|Ga0115002_10987508Not Available578Open in IMG/M
3300009786|Ga0114999_11004110Not Available604Open in IMG/M
3300010151|Ga0098061_1009407Not Available4274Open in IMG/M
3300010151|Ga0098061_1108326All Organisms → Viruses → Predicted Viral1030Open in IMG/M
3300010883|Ga0133547_11282622All Organisms → Viruses → Predicted Viral1392Open in IMG/M
3300010883|Ga0133547_11531925All Organisms → Viruses → Predicted Viral1249Open in IMG/M
3300017702|Ga0181374_1008421Not Available1891Open in IMG/M
3300017702|Ga0181374_1021612All Organisms → Viruses → Predicted Viral1145Open in IMG/M
3300017702|Ga0181374_1052679Not Available692Open in IMG/M
3300017702|Ga0181374_1074742Not Available568Open in IMG/M
3300017703|Ga0181367_1048522Not Available749Open in IMG/M
3300017703|Ga0181367_1078123Not Available571Open in IMG/M
3300017704|Ga0181371_1054191Not Available651Open in IMG/M
3300017705|Ga0181372_1058680Not Available649Open in IMG/M
3300017715|Ga0181370_1008307All Organisms → Viruses → Predicted Viral1347Open in IMG/M
3300017718|Ga0181375_1051716Not Available682Open in IMG/M
3300017775|Ga0181432_1202139Not Available623Open in IMG/M
3300022227|Ga0187827_10243660All Organisms → Viruses → Predicted Viral1191Open in IMG/M
3300022227|Ga0187827_10401841Not Available850Open in IMG/M
3300024262|Ga0210003_1195735Not Available832Open in IMG/M
(restricted) 3300024517|Ga0255049_10380097Not Available652Open in IMG/M
(restricted) 3300024518|Ga0255048_10293569Not Available789Open in IMG/M
(restricted) 3300024520|Ga0255047_10284511Not Available838Open in IMG/M
3300025042|Ga0207889_1012797Not Available780Open in IMG/M
3300025045|Ga0207901_1056400Not Available515Open in IMG/M
3300025050|Ga0207892_1013225Not Available884Open in IMG/M
3300025069|Ga0207887_1064739Not Available597Open in IMG/M
3300025072|Ga0208920_1000728Not Available8407Open in IMG/M
3300025072|Ga0208920_1012562All Organisms → Viruses → Predicted Viral1881Open in IMG/M
3300025082|Ga0208156_1020547All Organisms → Viruses → Predicted Viral1489Open in IMG/M
3300025082|Ga0208156_1062159Not Available725Open in IMG/M
3300025096|Ga0208011_1011496All Organisms → Viruses → Predicted Viral2439Open in IMG/M
3300025109|Ga0208553_1076142Not Available800Open in IMG/M
3300025109|Ga0208553_1081756Not Available765Open in IMG/M
3300025109|Ga0208553_1138889Not Available539Open in IMG/M
3300025112|Ga0209349_1000434Not Available22162Open in IMG/M
3300025112|Ga0209349_1007717All Organisms → Viruses → environmental samples → uncultured Mediterranean phage4403Open in IMG/M
3300025112|Ga0209349_1035979All Organisms → Viruses → Predicted Viral1626Open in IMG/M
3300025112|Ga0209349_1069207All Organisms → Viruses → Predicted Viral1059Open in IMG/M
3300025114|Ga0208433_1025770Not Available1648Open in IMG/M
3300025114|Ga0208433_1051192All Organisms → Viruses → Predicted Viral1097Open in IMG/M
3300025118|Ga0208790_1040448All Organisms → Viruses → Predicted Viral1502Open in IMG/M
3300025122|Ga0209434_1049100All Organisms → Viruses → Predicted Viral1309Open in IMG/M
3300025122|Ga0209434_1114220Not Available760Open in IMG/M
3300025125|Ga0209644_1138158Not Available581Open in IMG/M
3300025128|Ga0208919_1091532Not Available987Open in IMG/M
3300025128|Ga0208919_1144857Not Available739Open in IMG/M
3300025131|Ga0209128_1016503All Organisms → Viruses → Predicted Viral3366Open in IMG/M
3300025131|Ga0209128_1031768All Organisms → Viruses → Predicted Viral2132Open in IMG/M
3300025131|Ga0209128_1086453Not Available1040Open in IMG/M
3300025131|Ga0209128_1223541Not Available517Open in IMG/M
3300025141|Ga0209756_1002219Not Available17043Open in IMG/M
3300025268|Ga0207894_1070277Not Available599Open in IMG/M
3300025287|Ga0207903_1041593Not Available834Open in IMG/M
3300025873|Ga0209757_10021118All Organisms → Viruses → Predicted Viral1808Open in IMG/M
3300025873|Ga0209757_10107753Not Available856Open in IMG/M
3300027844|Ga0209501_10711439Not Available540Open in IMG/M
3300030728|Ga0308136_1097942Not Available669Open in IMG/M
3300031559|Ga0308135_1043118Not Available816Open in IMG/M
3300031602|Ga0307993_1001238Not Available8569Open in IMG/M
3300031605|Ga0302132_10160657All Organisms → Viruses → Predicted Viral1102Open in IMG/M
3300031625|Ga0302135_10156235All Organisms → Viruses → Predicted Viral1035Open in IMG/M
3300031627|Ga0302118_10283200Not Available770Open in IMG/M
3300031627|Ga0302118_10526118Not Available516Open in IMG/M
3300031631|Ga0307987_1018097All Organisms → Viruses → Predicted Viral2726Open in IMG/M
3300031658|Ga0307984_1028887All Organisms → Viruses → Predicted Viral1828Open in IMG/M
3300031693|Ga0302139_10263274Not Available718Open in IMG/M
3300034656|Ga0326748_005221All Organisms → Viruses → Predicted Viral1655Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine84.91%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.83%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.83%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.89%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.89%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic1.89%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.89%
Filtered SeawaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater0.94%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.94%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300002519Marine viral communities from the Pacific Ocean - ETNP_2_300EnvironmentalOpen in IMG/M
3300005426Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74EnvironmentalOpen in IMG/M
3300005508Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259EnvironmentalOpen in IMG/M
3300005509Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV51EnvironmentalOpen in IMG/M
3300005520Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251EnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006926Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009595Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500EnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017702Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaGEnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300017704Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaGEnvironmentalOpen in IMG/M
3300017705Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaGEnvironmentalOpen in IMG/M
3300017715Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaGEnvironmentalOpen in IMG/M
3300017718Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaGEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025042Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)EnvironmentalOpen in IMG/M
3300025045Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)EnvironmentalOpen in IMG/M
3300025050Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)EnvironmentalOpen in IMG/M
3300025069Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025082Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025109Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025114Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025268Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)EnvironmentalOpen in IMG/M
3300025287Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300030728Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_940_32.3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031559Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_937_33.10 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031605Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1EnvironmentalOpen in IMG/M
3300031625Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surfaceEnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031631Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031693Marine microbial communities from Western Arctic Ocean, Canada - CBN3_33.1EnvironmentalOpen in IMG/M
3300034656Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25129J35166_102659423300002484MarineMATITYTLTDEQLAEMLLALDHHQGTEAPATEADLKAWGLGHFQGMVQNYRASVINAANPVGTGAVAS*
JGI25129J35166_108369923300002484MarineMATITYTLTDEQLAEMLLALDYHRGTPNLRPESTEQQSATEADLKAWGLGHFQAMVQKYRESVINAANPVDKTAVAS*
JGI25133J35611_1002501733300002514MarineMAKITYNLTADQLAEMLLALDHHRSSEEPATEADLKAWGLGHFQAMVQKYRESVINAANPVDKTAVAS*
JGI25133J35611_1002516423300002514MarineMATITYNLTADQLAEMLLALDHHQGNEAGTADAADVKAWGLGHFQGMVGKYRESVINAANPVGTEAVAS*
JGI25130J35507_103405133300002519MarineMAKITYNLTADQLAEMLLALDHHRGTPPDAEPATEADLKAWGLGHFQGMVQNYRASVINAANPVDTEAVAS*
Ga0066847_1009011223300005426MarineMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVQNYRVSVINAANPVDSTAVAS*
Ga0066868_1027883713300005508MarineMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVGKYRESVINAANPVDSTAVAS*
Ga0066827_1028179323300005509MarineMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0066864_1016682423300005520MarineMATITYTLTDEQLAEMLLALDHHQGTEAGPADAAAVKAWGLKHFQAMVQNYRASVINAANPVGTGAVAS*
Ga0098033_103163223300006736MarineMAKITYNVTADQLAEMLLALDHHQGNEAGTADADAVKAWGLKHFQAMVQNYRASVINAANPVDTEAVAS*
Ga0098033_107568723300006736MarineMGTITYNVTDVQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVINAANPVDSTAVAS*
Ga0098033_110445523300006736MarineMATITYTLTDEQLAEMLLALDHHQGTEAGTADAAAVKAWGLGHFQGMVQNYRASVISAANPVGTGAVAS*
Ga0098033_115236823300006736MarineMATITYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0098033_117045213300006736MarineMAKITYNLTADQLAEMLLALDHHRGTDAEPATEADLKAWGLGHFQGMVQKYRESVIN
Ga0098035_103484423300006738MarineMPSITYTVTADQLAELLLALDHHKGDPAGTADAAAVKAWGLGHFQGMVQNYRESVINIANPVSTAAAAS*
Ga0098035_106184123300006738MarineMGTITYNVTDAQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVINAANPVDSTAVAS*
Ga0098035_107237023300006738MarineMAKITYNLTADQLAEMLLALDHHRGTDAEPATEADLKAWGLGHFQGMVGKYRESVINAANPVDSTAVAS*
Ga0098035_111083023300006738MarineMAKITYNLTADQLAEMLLALNYHRGDNLDTATEADLKAFGLMHFQAMVQIYRESVITAANPVGTEAVAS*
Ga0098058_102499623300006750MarineMATITYNLTADQLAEMLLALNYHRGNNPDPATEADLKAFGLGHFQAMVQIYRESVITAANPVGTEAVAS*
Ga0098058_112916323300006750MarineMATITYNVTDAQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVINAANPVDSTAVAS*
Ga0098040_100579773300006751MarineMAKITYNLTADQLAEMLLALDHHQGNEAGTADAAAVKAWGLRHFQAMVQNYRASVINAANPVGTGAVAS*
Ga0098040_122700113300006751MarineGIIMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0098039_109980513300006753MarineMAKITYNLTAGQLAEMLLALDHHRSGEDPATEADLKAWGLKHFQGMVQNYRASVINAANPVGTEAVAS*
Ga0098039_112298023300006753MarineMAKITYNLTADQLAEMLLALNYHRGDNLDTATEADLKAFGLMHFQEMVQIYRESVINAANPVDKTAVAS*
Ga0098054_115276433300006789MarineSGNIRIGIIMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVQNYRASVINAANPVGTGAVAS*
Ga0098057_103308123300006926MarineMATITYTLTDEQLAEMLLALDHHQGTEAGTADAAAVKVWGLRHFQAMVQNYRASVISAANPVGTGAVAS*
Ga0098034_109591213300006927MarineMATITYNLTADQLAEMLLALNYHRGDNLDTATEADLKAFGLMHFQEMVQIYRESVINA
Ga0098036_102779733300006929MarineMAKITYNVTADQLAEMLLALDHHRGTASNPDADPATEADLKAWGLGHFQGMVQKYRESVINAANPVDKTAVAS*
Ga0110931_122205623300007963MarineMATITYNLTDEQLAEMLLALDYHKGDTAGTADADDVKAWGLKHFQAMVQNYRASVINAANPVGTGAAAS*
Ga0098052_106095823300008050MarineMASHSIAYDLTDAQLAEMLLALDHHQGTEAGAADAAAVKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS*
Ga0114918_10018483103300009149Deep SubsurfaceMPTVEYTVTNEQLAELKLALDHHRGQEAGTATGADLKEWGKGHFQGLVQKYRESVHNAASPVVTTEITD*
Ga0114996_1027931033300009173MarineMASHSIAYDLTDAQLAEMLLALDHHRGGEEPATTADLKAWGMGHFQGMVGKYRESVINAANPVDSTAVAS*
Ga0114996_1125071713300009173MarineKEAISGNIRIGIIMATITYTVTAAQLAEMLLALDHHQGEPAGTADAAAVKAWGLGHFQGMVGKYRESVINAANPVGTGAVAS*
Ga0114993_1048725223300009409MarineMSSHSIAYELTDAQLAEMLLALDHHRGTAANPDAEPATTADLKAWGMGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0114993_1064288023300009409MarineMAAISYTLTDAQLAEMLLALDHHQGNEAGTADAAAVKAWGLGHFQAMVQKYRASVINTANPVGTEAVAS*
Ga0105214_10918223300009595Marine OceanicMATITYTVTADQLAEMLLALDHHQSNDAGTADAAAVKAWGLKHFQAMVQNYRESVINAANPV
Ga0105173_102296423300009622Marine OceanicMATITYTVTADQLAEMLLALDHHRGDDAGTADSDAVKAWGMGHFQGMVGKYRESVINAANPVGTGAVAS*
Ga0115002_1047770623300009706MarineMSSHSIAYDLTDAQLAEMLLALDHHRGNNLDGEPATAADLKAWGMGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0115002_1098750823300009706MarineMASHSIAYDLTDAQLAEMLLALDHHRGTAANPDGEPATTADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0114999_1100411023300009786MarineMANHSIAYDLTDAQLAEMLLALDHHRGNNLDGEPATTADLKAWGMGHFQGMVGKYRESVINAANPVDSTAVAS*
Ga0098061_100940773300010151MarineMATITYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS*
Ga0098061_110832623300010151MarineMAKITYNLTADQLAEMLLALDHHRGNNPDAEPATEADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS*
Ga0133547_1128262223300010883MarineMATITYTVTAAQLAEMLLALDHHQGNEAGTADAAAVKAWGMGHFQGMVGNYRASVINAANPVGTGAVAS*
Ga0133547_1153192513300010883MarineRIGYYYDNIYEYNNYKGEILMAAISYTLTDAQLAEMLLALDHHQGNEAGTADAAAVKAWGLGHFQAMVQKYRASVINTANPVGTEAVAS*
Ga0181374_100842163300017702MarineMAKITYNLTADQLAEMLLALDHHRGTPPDAEPATEADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS
Ga0181374_102161213300017702MarineMATITYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLGHFQGMVQKYRESVINAANPVDTEAVAS
Ga0181374_105267913300017702MarineYTLTDEQLAEMLLALDHHQGTEAGTADAAAVKAWGLRHFQGMVQNYRASVINAANPVGTGAVAS
Ga0181374_107474223300017702MarineMGTITYNVTDVQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVINAANPVDSTAVAS
Ga0181367_104852223300017703MarineMAKITYNLTADQLAEMLLALDHHRGTDAEPATEADLKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS
Ga0181367_107812313300017703MarineMATITYTLTDEQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVINAANPVDSTAVAS
Ga0181371_105419123300017704MarineMAKITYNLTADQLAEMLLALDHHRGTDAEPATEADLKAWGLGHFQGMVQKYRESVINAANPVDSTAVAS
Ga0181372_105868023300017705MarineSKEAISGNIRIGIIMAKITYNVTADQLAEMLLALDHHRGTASNPDADPATEADLKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS
Ga0181370_100830723300017715MarineATITYNLTADQLAEMLLALNYHRGNNPDPATEADLKAFGLGHFQAMVQIYRESVITAANPVGTEAVAS
Ga0181375_105171613300017718MarineMAKITYNLTADQLAEMLLALNYHRGDNLDTATEADLKAFGLMHFQAMVQIYRESVITAANPVGTEAVAS
Ga0181432_120213923300017775SeawaterMASHSIAYDLTDAQLAEMLLALDHHKTNPAGTADAADVKAWGLGHFQGMVQNYRESVINAANPVDSTAVAS
Ga0187827_1024366033300022227SeawaterMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS
Ga0187827_1040184123300022227SeawaterMATITYTLTDEQLAEMLLALDHHQGTEAGAADAAAVKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS
Ga0210003_119573523300024262Deep SubsurfaceMPTVEYTVTNEQLAELKLALDHHRGQEAGTATGADLKEWGKGHFQGLVQKYRESVHNAASPVVTTEITD
(restricted) Ga0255049_1038009723300024517SeawaterMASHSIAYDLTDAQLAEMLLALDHHQGTEAGTADVAAVKAWGMGHFQGMVQKYRESVINAANPVDSTAVAS
(restricted) Ga0255048_1029356933300024518SeawaterMASHSIAYDLTDAQLAEMLLALDHHQGTEAGTADVAAVKAWGLKHFQAMVQNYRASVINAANPVDSTAVAS
(restricted) Ga0255047_1028451123300024520SeawaterMASHSIAYDLTDAQLAEMLLALDHHQGTEAGTADVAAVKAWGLGHFQGMVQNYRASVINAANPVDSTAVAS
Ga0207889_101279723300025042MarineMAKITYNLTAAQLAEMLLALDHHRGNPDAEPSTEADLKAWGLGHFQGMVQNYRESVINAANPVGTEAVAS
Ga0207901_105640013300025045MarineMASHSIAYELTDAQLAEMLLALDHHRGGEEPATTADLKAWGMGHFQGMVQKYRESVINAANPVGTEAVAS
Ga0207892_101322533300025050MarineMAKITYNVTAAQLAEMLLALDHHRGTASNPDADPATEADLKAWGLKHFQAMVQNYRASVINAANPVDTEAVAT
Ga0207887_106473923300025069MarineMAKITYNVTAAQLAEMLLALDHHRGTAPDAEPATEADLKAWGLGHFQGMVQKYRESVINAANPVDTEAVAT
Ga0208920_100072813300025072MarineYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS
Ga0208920_101256223300025072MarineMATITYTLTDEQLAEMLLALDHHQGTEAGTADAAAVKVWGLRHFQAMVQNYRASVINAANPVGTGAVAS
Ga0208156_102054723300025082MarineMAKITYNVTADQLAEMLLALDHHQGNEAGTADADAVKAWGLKHFQAMVQNYRASVINAANPVDTEAVAS
Ga0208156_106215923300025082MarineMATITYTLTDEQLAEMLLALDHHQGTEAGTADAAAVKAWGLGHFQGMVQNYRASVISAANPVGTGAVAS
Ga0208011_101149623300025096MarineMATITYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLKHFQGMVQNYRASVINAANPVGTGAVAS
Ga0208553_107614223300025109MarineMGTITYNVTDAQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVINAANPVDSTAVAS
Ga0208553_108175633300025109MarineTITYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLGHFQAMVQKYRASVINAANPVGTGAVAS
Ga0208553_113888913300025109MarineMAKITYNLTADQLAEMLLALNYHRGDNLDTATEADLKAFGLMHFQEMVQIYRESVINAANPVDKTAVAS
Ga0209349_100043423300025112MarineMATITYTLTDEQLAEMLLALDHHRGIDAETATEADLKAWGLGHFQGMVQNYRASVINAANPVGTGAVAS
Ga0209349_1007717103300025112MarineMAKITYNLTADQLAEMLLALDHHRGTAPDGEPATEADLKAWGLGHFQGMVGKYRESVINAANPVDSTAVAS
Ga0209349_103597913300025112MarineMATITYTLTDEQLAEMLLALDHHRSGEDPATEADLKAWGLKHFQAMVQNYRASVINAANPVGTGAVAS
Ga0209349_106920723300025112MarineMATITYTLTDEQLAEMLLALDYHRGTPNLRPESTEQQSATEADLKAWGLGHFQAMVQKYRESVINAANPVDKTAVAS
Ga0208433_102577023300025114MarineMGTITYNVTDAQLAEMLLALDHHKTNPAGTADVADVKAFGLQHFQRIVQDYRESVIAAANPVDSTAVAS
Ga0208433_105119213300025114MarineMATITYTLTDEQLAEMLLALDHHQGTEAGTADAAAVKAWGLRHFQGMVQNYRASVINAANPVGTGAVAS
Ga0208790_104044833300025118MarineMATITYNLTADQLAEMLLALNYHRGNNPDPATEADLKAFGLGHFQAMVQIYRESVITAANPVGTEAVAS
Ga0209434_104910023300025122MarineMATITYTLTDEQLAEMLLALDHHQGTEAGPADAAAVKAWGLKHFQAMVQNYRASVINAANPVGTGAVAS
Ga0209434_111422023300025122MarineMAKITYDLTADQLAEMLLALDHHRGIDAEPSTEADLKAWGLGHFQGMVQKYRESVINAANPVDTEAVAT
Ga0209644_113815813300025125MarineMAKITYNVTADQLAEMLLALDHHRGTAPDADPATAADLKAWGLKHFQAMVQNYRASVINAANPVDTEAVAS
Ga0208919_109153223300025128MarineMAKITYNVTADQLAEMLLALDHHRGTASNPDADPATEADLKAWGLGHFQGMVQKYRESVINAANPVDKTAVAS
Ga0208919_114485723300025128MarineMATITYNLTDEQLAEMLLALDYHKGDTAGTADADDVKAWGLKHFQAMVQNYRASVINAANPVGTGAAAS
Ga0209128_101650313300025131MarineNLTADQLAEMLLALDHHQGNEAGTADAADVKAWGLGHFQGMVGKYRESVINAANPVGTEAVAS
Ga0209128_103176843300025131MarineMAKITYNLTADQLAEMLLALDHHRSSEEPATEADLKAWGLGHFQAMVQKYRESVINAANPVDKTAVAS
Ga0209128_108645323300025131MarineMATITYTLTDEQLAEMLLALDYHRGNNPDPATEADLKAFGLMHFQAMVQIYRESVITAANPVGTEAVAS
Ga0209128_122354123300025131MarineMATITYTLTDEQLAEMLLALDHHQGTEAGPADAAAVKAWGLKHFQAMVQNYRASVINAANPVDKTAVAS
Ga0209756_1002219233300025141MarineMATITYNLTADQLAEMLLALDHHQGNEAGTADAADVKAWGLGHFQGMVGKYRESVINAANPVGTEAVAS
Ga0207894_107027733300025268Deep OceanNLTADQLAEMLLALDHHRGTDAEPATEADLKAWGLGHFQGMVGKYRESVINAANPVDSTAVAS
Ga0207903_104159323300025287Deep OceanMASHSIAYDLTDAQLAEMLLALDHHRGAVLDGEPATIADLKAWGLGHFQGMVQNYRASVINAANPVDTEAVAS
Ga0209757_1002111823300025873MarineMATITYTLTDDQLAEMLLALDHHQATAAGTADAADVKAWGLGHFQGMVQNYRASVINIANPVGTGAVAS
Ga0209757_1010775313300025873MarineGTHRSKEAISSNICIGIIMAKITYNVTAAQLAEMLLALDHHRGTAPDAEPATEADLKAWGLGHFQGMVQKYRESVINAANPVDTEAVAT
Ga0209501_1071143923300027844MarineMATITYTVTDAQLAEMLLALDHHQGNEAGTADAAAVKAWGLGHFQGMVSNYRASVINAANPVSTEAVAS
Ga0308136_109794223300030728MarineMASHSIAYELTDAQLAEMLLALDHHRGNNLDAEPATTADLKAWGMGHFQGMVQNYRASVINAANPVDSTAVAS
Ga0308135_104311833300031559MarineMASHSITYDLTDAQLAEMLLALDHHRGGEEPATTADLKAWGMGHFQAMVQKYRESVINAANPVDSTAVAS
Ga0307993_100123843300031602MarineMAEITYTVTDAQLAEMLLALDHHRGSEEPATEADLKAWGLGYFQGMVQNYRESVVNAANPVGTESVAS
Ga0302132_1016065723300031605MarineMASHSIAYDLTDAQLAEMLLALDHHRGGEEPATTADLKAWGMGHFQGMVQKYRESVINAANPVDSTAVAS
Ga0302135_1015623513300031625MarineMATITYTVTDAQLAEMLLALDHHQGNEAGAADAAAVKAWGLGHFQGMVSNYRASVINAANPVSTEAVAS
Ga0302118_1028320023300031627MarineMATITYTVTDAQLAEMLLALDHHQGAEAVTADAAAVKAWGLKHFQAMVQNYRESVINADNPVGTEAVAS
Ga0302118_1052611813300031627MarineCYRKPETKRTRYIGIIMANHSIAYELTDAQLAEMLLALDHHRGTAPDGEPATIADVKAWGLGHFQGMVGKYRESVINAANPVGTEAVAS
Ga0307987_101809773300031631MarineIMAEITYTVTDAQLAEMLLALDHHRGSEEPATEADLKAWGLGHFQGMVQNYRESVVNAANPVGTESVAS
Ga0307984_102888723300031658MarineMAEITYTVTDAQLAEMLLALDHHRGSEEPATEADLKAWGLGHFQGMVQNYRESVVNAANPVGTESVAS
Ga0302139_1026327413300031693MarineAISGNIRIGIIMSSHSIAYDLTDAQLAEMLLALDHHRGTAANPDAEPATTADLKAWGMGHFQGMVQKYRESVINAANPVDSTAVAS
Ga0326748_005221_923_11323300034656Filtered SeawaterMATITYTVSSAQLAEMLLALDHHRGDDAGTADAAAVKAWGLKHFQGMVQNYRESAINAANPVGTGAVAS


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.