NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093884

Metagenome / Metatranscriptome Family F093884

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093884
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 52 residues
Representative Sequence MKVNQALWDEVKKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Number of Associated Samples 89
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 21.70 %
% of genes from short scaffolds (< 2000 bps) 69.81 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.679 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(14.151 % of family members)
Environment Ontology (ENVO) Unclassified
(53.774 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.189 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.73%    β-sheet: 21.95%    Coil/Unstructured: 57.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF027395_3_exonuc_N 15.09
PF11753DUF3310 4.72
PF08299Bac_DnaA_C 2.83
PF00145DNA_methylase 1.89
PF08291Peptidase_M15_3 0.94
PF13481AAA_25 0.94
PF00041fn3 0.94
PF14550Peptidase_S78_2 0.94
PF03382DUF285 0.94
PF12851Tet_JBP 0.94
PF12518DUF3721 0.94
PF02195ParBc 0.94
PF04466Terminase_3 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 15.09
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 2.83
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 1.89
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.68 %
All OrganismsrootAll Organisms11.32 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10093661Not Available1275Open in IMG/M
3300000101|DelMOSum2010_c10150968Not Available852Open in IMG/M
3300000127|SA_S1_NOR05_45mDRAFT_c10071321Not Available831Open in IMG/M
3300000928|OpTDRAFT_10094221Not Available1019Open in IMG/M
3300000928|OpTDRAFT_10094222All Organisms → Viruses → Predicted Viral3023Open in IMG/M
3300000949|BBAY94_10001461All Organisms → Viruses6263Open in IMG/M
3300001352|JGI20157J14317_10111743Not Available949Open in IMG/M
3300001352|JGI20157J14317_10173858Not Available642Open in IMG/M
3300003580|JGI26260J51721_1007864Not Available3085Open in IMG/M
3300004113|Ga0065183_10788760Not Available506Open in IMG/M
3300004279|Ga0066605_10141941Not Available960Open in IMG/M
3300004448|Ga0065861_1116573Not Available1028Open in IMG/M
3300004460|Ga0066222_1243593All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium628Open in IMG/M
3300004461|Ga0066223_1072843Not Available918Open in IMG/M
3300005589|Ga0070729_10513495Not Available655Open in IMG/M
3300005600|Ga0070726_10522613Not Available599Open in IMG/M
3300005601|Ga0070722_10047866Not Available1510Open in IMG/M
3300005612|Ga0070723_10274146Not Available790Open in IMG/M
3300005837|Ga0078893_14705646Not Available660Open in IMG/M
3300005920|Ga0070725_10299897Not Available707Open in IMG/M
3300005941|Ga0070743_10132037Not Available833Open in IMG/M
3300006467|Ga0099972_11389159Not Available698Open in IMG/M
3300006467|Ga0099972_11944127Not Available1191Open in IMG/M
3300006752|Ga0098048_1011294All Organisms → Viruses → Predicted Viral3144Open in IMG/M
3300006752|Ga0098048_1012062Not Available3024Open in IMG/M
3300006802|Ga0070749_10003898Not Available9925Open in IMG/M
3300006810|Ga0070754_10000811Not Available27094Open in IMG/M
3300006916|Ga0070750_10130557Not Available1147Open in IMG/M
3300006916|Ga0070750_10467961Not Available519Open in IMG/M
3300006920|Ga0070748_1000176Not Available33489Open in IMG/M
3300007231|Ga0075469_10156305Not Available620Open in IMG/M
3300007276|Ga0070747_1151753Not Available832Open in IMG/M
3300007540|Ga0099847_1003767Not Available5182Open in IMG/M
3300007554|Ga0102820_1077699Not Available798Open in IMG/M
3300007647|Ga0102855_1097828Not Available787Open in IMG/M
3300007953|Ga0105738_1040025All Organisms → Viruses735Open in IMG/M
3300009074|Ga0115549_1181643Not Available675Open in IMG/M
3300009079|Ga0102814_10228922Not Available1012Open in IMG/M
3300009435|Ga0115546_1213538Not Available665Open in IMG/M
3300009442|Ga0115563_1119569Not Available1096Open in IMG/M
3300009442|Ga0115563_1171901Not Available853Open in IMG/M
3300009495|Ga0115571_1007064Not Available6513Open in IMG/M
3300009505|Ga0115564_10011250Not Available6484Open in IMG/M
3300010149|Ga0098049_1139702Not Available750Open in IMG/M
3300010392|Ga0118731_115230380Not Available772Open in IMG/M
3300010430|Ga0118733_101939378All Organisms → Viruses → Predicted Viral1171Open in IMG/M
3300011129|Ga0151672_100660Not Available32257Open in IMG/M
3300011258|Ga0151677_1203488Not Available682Open in IMG/M
3300017709|Ga0181387_1005005Not Available2605Open in IMG/M
3300017724|Ga0181388_1044085Not Available1083Open in IMG/M
3300017724|Ga0181388_1074408Not Available811Open in IMG/M
3300017735|Ga0181431_1000140Not Available23960Open in IMG/M
3300017735|Ga0181431_1016370Not Available1743Open in IMG/M
3300017760|Ga0181408_1112979Not Available704Open in IMG/M
3300017786|Ga0181424_10021359Not Available2803Open in IMG/M
3300020165|Ga0206125_10063582Not Available1709Open in IMG/M
3300020165|Ga0206125_10155181Not Available917Open in IMG/M
3300020166|Ga0206128_1064342Not Available1715Open in IMG/M
3300020166|Ga0206128_1205715Not Available751Open in IMG/M
3300020169|Ga0206127_1082252Not Available1435Open in IMG/M
3300020175|Ga0206124_10173542Not Available860Open in IMG/M
3300020185|Ga0206131_10127698Not Available1383Open in IMG/M
3300020187|Ga0206130_10369951Not Available586Open in IMG/M
3300021085|Ga0206677_10034527All Organisms → Viruses → Predicted Viral2795Open in IMG/M
3300021185|Ga0206682_10031320Not Available3157Open in IMG/M
3300021185|Ga0206682_10472209Not Available521Open in IMG/M
3300021371|Ga0213863_10002620Not Available12672Open in IMG/M
3300021373|Ga0213865_10523596Not Available502Open in IMG/M
3300021957|Ga0222717_10032623Not Available3439Open in IMG/M
3300021957|Ga0222717_10172824All Organisms → Viruses → Predicted Viral1299Open in IMG/M
3300021957|Ga0222717_10287430Not Available943Open in IMG/M
3300022061|Ga0212023_1045026Not Available614Open in IMG/M
3300022164|Ga0212022_1007983All Organisms → Viruses → Predicted Viral1439Open in IMG/M
(restricted) 3300022913|Ga0233404_10114944Not Available642Open in IMG/M
(restricted) 3300022938|Ga0233409_10343034Not Available525Open in IMG/M
(restricted) 3300023112|Ga0233411_10021225Not Available1929Open in IMG/M
3300023568|Ga0228696_1003841All Organisms → Viruses → Predicted Viral1711Open in IMG/M
(restricted) 3300024062|Ga0255039_10459349Not Available554Open in IMG/M
3300024180|Ga0228668_1063114Not Available710Open in IMG/M
3300024183|Ga0228603_1055042Not Available613Open in IMG/M
3300024185|Ga0228669_1008880All Organisms → Viruses → Predicted Viral2665Open in IMG/M
3300024185|Ga0228669_1018903All Organisms → Viruses → Predicted Viral1629Open in IMG/M
3300024229|Ga0233402_1004518Not Available3623Open in IMG/M
3300024237|Ga0228653_1000749Not Available9800Open in IMG/M
(restricted) 3300024264|Ga0233444_10011697Not Available6948Open in IMG/M
3300024296|Ga0228629_1117802Not Available703Open in IMG/M
3300024346|Ga0244775_10048914Not Available3688Open in IMG/M
3300025070|Ga0208667_1001837Not Available7374Open in IMG/M
3300025070|Ga0208667_1038886Not Available812Open in IMG/M
3300025543|Ga0208303_1005373Not Available4380Open in IMG/M
3300025543|Ga0208303_1016702Not Available2149Open in IMG/M
3300025626|Ga0209716_1054756Not Available1295Open in IMG/M
3300025809|Ga0209199_1001465Not Available28227Open in IMG/M
3300026460|Ga0247604_1116460Not Available595Open in IMG/M
3300026500|Ga0247592_1083793Not Available772Open in IMG/M
3300026506|Ga0228604_1046792Not Available687Open in IMG/M
3300027753|Ga0208305_10031692Not Available2102Open in IMG/M
3300027820|Ga0209578_10449079Not Available583Open in IMG/M
3300027849|Ga0209712_10000576Not Available32283Open in IMG/M
3300028126|Ga0228648_1102330Not Available553Open in IMG/M
3300028135|Ga0228606_1059595Not Available1013Open in IMG/M
3300028598|Ga0265306_10010448Not Available4437Open in IMG/M
3300031519|Ga0307488_10001216Not Available21485Open in IMG/M
3300031766|Ga0315322_10327268Not Available1041Open in IMG/M
3300032277|Ga0316202_10120298Not Available1217Open in IMG/M
3300032373|Ga0316204_10876327Not Available640Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater14.15%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous11.32%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine7.55%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater7.55%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater7.55%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment6.60%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.66%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.77%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.77%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.77%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine2.83%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.83%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.83%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.83%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.89%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.89%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.89%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.89%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.94%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.94%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.94%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.94%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine0.94%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.94%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment0.94%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000127Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45mEnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004113Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)EnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005589Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2EnvironmentalOpen in IMG/M
3300005600Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1EnvironmentalOpen in IMG/M
3300005601Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005920Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2EnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007554Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709EnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007953Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3umEnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011129Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02EnvironmentalOpen in IMG/M
3300011258Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeateEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022913 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MGEnvironmentalOpen in IMG/M
3300022938 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023568Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 84R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024183Seawater microbial communities from Monterey Bay, California, United States - 3DEnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024237Seawater microbial communities from Monterey Bay, California, United States - 65DEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024296Seawater microbial communities from Monterey Bay, California, United States - 36DEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300026460Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026500Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026506Seawater microbial communities from Monterey Bay, California, United States - 4DEnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027820Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 (SPAdes)EnvironmentalOpen in IMG/M
3300027849Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028126Seawater microbial communities from Monterey Bay, California, United States - 60DEnvironmentalOpen in IMG/M
3300028135Seawater microbial communities from Monterey Bay, California, United States - 7DEnvironmentalOpen in IMG/M
3300028598Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300032373Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1009366133300000101MarineMKVNEALWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYDKE*
DelMOSum2010_1015096813300000101MarineMKVNQALWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDK
SA_S1_NOR05_45mDRAFT_1007132133300000127MarineMKVNQAAWDELRKSIESHTEQDQSITDITVKFRIKENSDLRNYLQINLSQYDRQ*
OpTDRAFT_1009422143300000928Freshwater And MarineMKVNQALWDEVKKSIESHTDKDGNITDITLKFRIKEKVDLRNYLQINFSQYDRQ*
OpTDRAFT_1009422233300000928Freshwater And MarineMKVNEALWGEVKKSIESHTEKDQNITDITIKFRIKENSDLRNYLQINLSQYDRQ*
BBAY94_1000146193300000949Macroalgal SurfaceMKVNKALWDKVKTVIESKTDKDKNITDITIKFRIKEKSDLRNYLQINFSQYDRE*
JGI20157J14317_1011174323300001352Pelagic MarineMKVNQALWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYDKE*
JGI20157J14317_1017385833300001352Pelagic MarineMKVNQALWDKVKGTIESHTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ*
JGI26260J51721_100786473300003580MarineMKVNQALWDEVKKSIESHTEQDQAITDITINFRIKEKSDLRNYLQINLSQYEEK*
Ga0065183_1078876013300004113Pelagic MarineMKVNQALWDKVKGTIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0066605_1014194123300004279MarineMKVNDALWGEVRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0065861_111657343300004448MarineMKVNQTAWDELRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0066222_124359313300004460MarineMKVNQAMWDKLKKSIEDHTDQDENITDVTIKCRIKEVAKERNYLQINTMI*
Ga0066223_107284343300004461MarineMKVNQAAWDELRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDR
Ga0070729_1051349513300005589Marine SedimentIRFNFNKMKVNQALWDKVKGTIESRTDKDKNITDITIKFRIKENSHLRNYLQINLSQYDRQ*
Ga0070726_1052261323300005600Marine SedimentMKVNQALWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE*
Ga0070722_1004786663300005601Marine SedimentMKVNQALWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0070723_1027414633300005612Marine SedimentESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0078893_1470564613300005837Marine Surface WaterEVLWGEVKKSIESHTDKDQSITDITIKFRIKENVDLRNYLQINFSQYDRE*
Ga0070725_1029989743300005920Marine SedimentWDKVKGTIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0070743_1013203733300005941EstuarineMKVNQALWDEVKKSIESHTDKDGNITDITIKFRIKEKVDLRNYLQINLSQYD*
Ga0099972_1138915933300006467MarineMKVNQAAWDELRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0099972_1194412713300006467MarineKVNQALWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE*
Ga0098048_101129463300006752MarineMKVNQALWDEVKKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINFSQYDRQ*
Ga0098048_1012062103300006752MarineMKVNQALWDEVKAVIESKTEKDKNITDITIKFRIKENSDLRNYLQINFSQYDRQ*
Ga0070749_10003898183300006802AqueousMKVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYDRQ*
Ga0070754_10000811223300006810AqueousMKVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYEKK*
Ga0070750_1013055713300006916AqueousVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYEKK*
Ga0070750_1046796113300006916AqueousVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYDRQ*
Ga0070748_1000176313300006920AqueousMKVNQALWDKVKGTIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0075469_1015630533300007231AqueousMKVNQALWDKVKGTIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYDRQ*
Ga0070747_115175343300007276AqueousESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYEKK*
Ga0099847_1003767133300007540AqueousMKVNQALWDEVKKSIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE*
Ga0102820_107769943300007554EstuarineMKVNQALWDEIKKSIESHTDKDGNITDITIKFRIKEKVDLRNYLQINLSQYD*
Ga0102855_109782843300007647EstuarineMKVNEALWGEVKKSIESHTEKDQSITDITIKFRIIENSDLRNYLQINLSQYDRQ*
Ga0105738_104002513300007953Estuary WaterVKKSIESHTEKDQSITDITIKFRIIENSDLRNYLQINLSQYDRQ*
Ga0115549_118164343300009074Pelagic MarineMKVNQALWDKVKGTIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYD
Ga0102814_1022892253300009079EstuarineMKINEALWDELKKAIENGTKKDSSITDITIKFRIVENAKQRNYIQFNLSQYGE*
Ga0115546_121353813300009435Pelagic MarineTIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDKE*
Ga0115563_111956943300009442Pelagic MarineMKVNEALWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQINL
Ga0115563_117190143300009442Pelagic MarineWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYDKE*
Ga0115571_1007064103300009495Pelagic MarineMKVNQSLWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDRQ*
Ga0115564_10011250163300009505Pelagic MarineMKINEALWHELKKAIENGTKKDSSITDITIKFRIAENAVHRNYLQFNLSQYGE*
Ga0098049_113970233300010149MarineMKVNQALWDEVRKKIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKK*
Ga0118731_11523038033300010392MarineMKVNQELWDEVRKSIESHTEKDQSITDITINFRIIEKSDLRNYLQINLSQYDRQ*
Ga0118733_10193937823300010430Marine SedimentMKINQAMWDKLKKRIEDHTDQDKNITDVTIKCRIKEVAKERNYLQINTMI*
Ga0151672_100660313300011129MarineMKVNEALWDKVRKSIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYERK*
Ga0151677_120348833300011258MarineMIVNEALWDEVKGTIESHTDKDQSITDITIKFRIKENVDLRNYLQINFSQYDRE*
Ga0181387_100500573300017709SeawaterMKVNQALWDEVKKSIESHTEQDQSITDITINFRIKEKSDLRNYLQINLSQYGEK
Ga0181388_104408543300017724SeawaterMKVNQALWDEVKKSIESHTEQDQAITDITINFRIKEKSDLRNYLQINLSQYGEK
Ga0181388_107440813300017724SeawaterMKVNQALWDEVKKSIESHTEQDQSITDITINFRIKEKSDLRNYLQINLSQYE
Ga0181431_1000140313300017735SeawaterMKINDALWNELKRAIESGTEKDKNITDITVKFRIKEHSDLRNYLQVNLSQYEH
Ga0181431_101637053300017735SeawaterMKINEALWDKVKKAIESGTKKDSSITDITIKFRIVENAKQRNYIQFNLSQYEH
Ga0181408_111297933300017760SeawaterMKVNEALWGEVKKSIESHTEKDQNITDITIKFRIKENSDLRNYLQINLSQYDKE
Ga0181424_1002135993300017786SeawaterMKVNDALWGEVKKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0206125_1006358243300020165SeawaterMKVNQALWDKVKGTIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0206125_1015518133300020165SeawaterMKVNEALWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYDKE
Ga0206128_106434253300020166SeawaterMKVNQALWDKVKGTIESHTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0206128_120571523300020166SeawaterMKVNQALWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE
Ga0206127_108225263300020169SeawaterMIVNQALWDKVKGTIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0206124_1017354223300020175SeawaterMKVNQALWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYDKE
Ga0206131_1012769813300020185SeawaterMKVNQALWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0206130_1036995113300020187SeawaterMKVNQALWDEVRKKIEYRTEQDQAITDITINFRIKEKSDLRNYLQI
Ga0206677_1003452713300021085SeawaterMKVNEALWGEVKKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0206682_1003132023300021185SeawaterMKVNEALWGEVKKSIESHTEKDQSITDITIKFRIIENSDLRNYLQINLSQYDRQ
Ga0206682_1047220923300021185SeawaterMKVNDALWGEVRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0213863_10002620203300021371SeawaterMKVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYEKK
Ga0213865_1052359633300021373SeawaterVNEALWDEVRKRIDYHLENDQSITDITIKFRVIENIDLRNYLQINLSQYERK
Ga0222717_10032623113300021957Estuarine WaterMKVNQALWDEVKKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0222717_1017282443300021957Estuarine WaterMKVNEALWGEVKKSIESHTKKDQSITDITIKFRIIENSDLRNYLQINLSQYDRQ
Ga0222717_1028743023300021957Estuarine WaterMKVNQALWDEVRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDKE
Ga0212023_104502623300022061AqueousMKVNQALWDKVKGTIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0212022_100798353300022164AqueousIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ
(restricted) Ga0233404_1011494433300022913SeawaterMKINEALWDELKKAIENGTKKDSSITDITIKFRIVENAKQRNYIQFNLSQYGE
(restricted) Ga0233409_1034303423300022938SeawaterMKVNEALWGEVKKSIESHTKKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
(restricted) Ga0233411_1002122543300023112SeawaterMKVNQALWDEVKKSIESHTEQDQAITDITINFRIKEKSDLRNYLQINLSQYEEK
Ga0228696_100384143300023568SeawaterMKVNQALWDEVRKKIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE
(restricted) Ga0255039_1045934933300024062SeawaterLWDELKKAIENGTKKDSSITDITIKFRIVENAKQRNYIQFNLSQYGE
Ga0228668_106311433300024180SeawaterMKVNQSLWDKVKNSIESHTEKDQSITDITIKFRIKEKSDLRNYLQINLSQYERQ
Ga0228603_105504213300024183SeawaterNEALWGEVKKSIESHTEQDQSITDITINFRIKEKSDLRNYLQINLSQYEEK
Ga0228669_100888093300024185SeawaterMKVNDALWGEVRKSIESHTEKDQSITDITIKFRIIENSDLRNYLQINLSQYDRQ
Ga0228669_101890343300024185SeawaterMKVNQALWDEVRKKIEYRTEQDQAITDITIKFRIKEKSDLRNYLQINLSQYDR
Ga0233402_100451883300024229SeawaterMKVNEALWGEVKKSIESHTEQDQSITDITINFRIKEKSDLRNYLQINLSQYEEK
Ga0228653_100074943300024237SeawaterMKINQALWDEVRKKIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKK
(restricted) Ga0233444_10011697123300024264SeawaterMKVNEALWDKVRKSIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYGEK
Ga0228629_111780243300024296SeawaterKKSIESHTEQDQSITDITINFRIKEKSDLRNYLQINLSQYEEK
Ga0244775_10048914103300024346EstuarineMKVNQALWDEVKKSIESHTDKDGNITDITIKFRIKEKVDLRNYLQINLSQYD
Ga0208667_1001837113300025070MarineMKVNQALWDEVKAVIESKTEKDKNITDITIKFRIKENSDLRNYLQINFSQYDRQ
Ga0208667_103888633300025070MarineMKVNQALWDEVKKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINFSQYDRQ
Ga0208303_100537393300025543AqueousMKVNEALWDEVRKSIESHTEKDQSITDITIKFRIIEKSDLRNYLQINLSQYDRQ
Ga0208303_101670243300025543AqueousMKVNQALWDEVKKSIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE
Ga0209716_105475623300025626Pelagic MarineMKVNQSLWDEVKKRIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0209199_1001465163300025809Pelagic MarineMKINEALWHELKKAIENGTKKDSSITDITIKFRIAENAVHRNYLQFNLSQYGE
Ga0247604_111646013300026460SeawaterMRLEKKIEYRTEQDQAITDITIKFRIKEKSDLRNYLQINLSQYDR
Ga0247592_108379343300026500SeawaterMKVNQALWDEVKKSIESHTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0228604_104679223300026506SeawaterMKVNQSLWDKVKNSIESHTEKDQSITDITIKFRIKEKSDLRNYLQINLSQYDKK
Ga0208305_1003169243300027753EstuarineMKVNQALWDEIKKSIESHTDKDGNITDITIKFRIKEKVDLRNYLQINLSQYD
Ga0209578_1044907923300027820Marine SedimentMKVNQALWDEVKKRIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYDKE
Ga0209712_10000576313300027849MarineMKVNQAAWDELRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYDRQ
Ga0228648_110233033300028126SeawaterMKVNQALWDEIKKSIESHTDKDGNITDITIKFRIKEKIDLRNYLQINLSQYDRQ
Ga0228606_105959543300028135SeawaterMKINQALWDEVRKKIEYRTEQDQAITDITIKFRIKENSDLRNYLQINLSQYDKE
Ga0265306_1001044883300028598SedimentMKVNEALWDEVRKKIEYRTEQDQAITDITINFRIKENSDLRNYLQINLSQYDKE
Ga0307488_10001216233300031519Sackhole BrineMKVNQAAWDELRKSIESHTEKDQSITDITIKFRIKENSDLRNYLQINLSQYGEK
Ga0315322_1032726813300031766SeawaterMKVNQALWDEVKKSIESHTDKDGNITDITLKFRIKEKVDLRNYLQINFSQYD
Ga0316202_1012029853300032277Microbial MatMKVNQALWGEVKKSIESHTDKDQSITDITIKFRIKENSDLRNYLQINFSQYDRQ
Ga0316204_1087632733300032373Microbial MatMKVNQALWDEVKGAIESRTDKDKNITDITIKFRIKENSDLRNYLQINLSQYDRQ


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